PDB Chemical Component C6W

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C6W

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N	1.419	1.470
C2	N	1.450	1.469
C3	N	1.449	1.469
C4	C5	1.536	1.530
C4	N	1.475	1.469
C5	O1	1.392	1.430
C10	C11	1.408	1.383
C10	C9	1.499	1.383
C11	C12	1.485	1.382
C6	C7	1.537	1.530
C6	O2	1.416	1.428
C7	C8	1.540	1.530
C9	C8	1.518	1.506
C9	CAI	1.374	1.383
O3	P	1.509	1.545
P	O4	1.489	1.546
P	O1	1.582	1.609
P	O2	1.603	1.610
C12	C13	1.391	1.383
C13	CAI	1.518	1.382
C1	H11C	1.100	1.090
C1	H12C	1.100	1.090
C1	H13C	1.100	1.090
C2	H21C	1.099	1.091
C2	H22C	1.100	1.089
C2	H23C	1.100	1.090
C3	H31C	1.100	1.090
C3	H32C	1.100	1.091
C3	H33C	1.100	1.090
C4	H41C	1.100	1.090
C4	H42C	1.100	1.090
C5	H51C	1.100	1.089
C5	H52C	1.100	1.090
C10	H10	1.079	1.079
C11	H11	1.080	1.080
C12	H12	1.080	1.080
C6	H61C	1.100	1.090
C6	H62C	1.100	1.091
C7	H71C	1.100	1.089
C7	H72C	1.100	1.091
C8	H81C	1.100	1.089
C8	H82C	1.100	1.091
CAI	HAI	1.080	1.080
C13	H13	1.080	1.080

Bond Angles for C6W

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N	C1	134.7	109.4
C3	N	C1	112.6	109.4
C1	N	C4	83.9	109.5
N	C1	H11C	109.5	109.4
N	C1	H12C	109.4	109.5
N	C1	H13C	109.5	109.5
C2	N	C3	112.0	109.5
C2	N	C4	84.6	109.5
N	C2	H21C	109.5	109.4
N	C2	H22C	109.5	109.5
N	C2	H23C	109.5	109.5
C3	N	C4	114.9	109.5
N	C3	H31C	109.5	109.5
N	C3	H32C	109.5	109.4
N	C3	H33C	109.5	109.5
C5	C4	N	113.2	109.5
C4	C5	O1	106.1	109.4
C5	C4	H41C	108.6	109.4
C5	C4	H42C	108.5	109.4
C4	C5	H51C	110.3	109.5
C4	C5	H52C	110.3	109.5
N	C4	H41C	108.5	109.5
N	C4	H42C	108.6	109.5
C5	O1	P	122.9	123.0
O1	C5	H51C	110.3	109.4
O1	C5	H52C	110.3	109.5
C9	C10	C11	120.8	120.0
C10	C11	C12	119.8	120.0
C11	C10	H10	119.6	120.0
C10	C11	H11	120.1	120.0
C10	C9	C8	121.0	120.0
C10	C9	CAI	119.4	119.9
C9	C10	H10	119.6	120.0
C11	C12	H12	120.2	120.0
C7	C6	O2	112.0	109.5
C6	C7	C8	112.6	109.5
C7	C6	H61C	108.8	109.4
C7	C6	H62C	108.9	109.5
C6	C7	H71C	108.7	109.5
C6	C7	H72C	108.7	109.5
C6	O2	P	118.2	123.0
O2	C6	H61C	108.9	109.5
O2	C6	H62C	108.8	109.5
C7	C8	C9	112.7	109.5
C8	C7	H71C	108.7	109.5
C8	C7	H72C	108.7	109.4
C7	C8	H81C	108.7	109.5
C7	C8	H82C	108.7	109.4
C9	C8	H81C	108.7	109.5
C9	C8	H82C	108.7	109.5
C9	CAI	HAI	120.0	119.9
O3	P	O4	101.4	109.5
O3	P	O1	111.5	109.5
O3	P	O2	112.2	109.4
O4	P	O1	111.7	109.5
O4	P	O2	113.5	109.5
O1	P	O2	106.7	109.5
C12	C13	H13	119.8	120.0
C13	CAI	HAI	119.9	120.0
H11C	C1	H12C	109.5	109.4
H11C	C1	H13C	109.5	109.4
H12C	C1	H13C	109.5	109.5
H21C	C2	H22C	109.5	109.4
H21C	C2	H23C	109.4	109.5
H22C	C2	H23C	109.5	109.5
H31C	C3	H32C	109.4	109.5
H31C	C3	H33C	109.5	109.5
H32C	C3	H33C	109.5	109.5
H41C	C4	H42C	109.5	109.5
H51C	C5	H52C	109.4	109.5
H61C	C6	H62C	109.5	109.5
H71C	C7	H72C	109.4	109.4
H81C	C8	H82C	109.5	109.4

Torsion Angles for C6W

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	N	C1	C3	169.3	240.0
C2	N	C1	C4	283.8	120.0
C1	N	C2	H21C	180.0	180.0
C1	N	C2	H22C	300.0	299.9
C1	N	C2	H23C	60.0	60.0
C3	N	C1	C4	114.5	240.0
C1	N	C3	H31C	180.0	310.1
C1	N	C3	H32C	300.0	70.1
C1	N	C3	H33C	60.0	190.0
C5	C4	N	C1	106.7	175.2
C1	N	C4	H41C	346.1	55.3
C1	N	C4	H42C	227.2	295.2
H11C	C1	N	H12C	240.0	240.0
H11C	C1	N	H13C	120.0	120.0
H12C	C1	N	H13C	240.0	239.9
C3	N	C2	C1	169.4	240.1
C1	N	C2	C4	76.0	240.0
C2	N	C1	H11C	180.0	60.0
C2	N	C1	H12C	300.0	180.0
C2	N	C1	H13C	60.0	300.0
C3	N	C2	C4	245.3	120.1
C2	N	C3	H31C	8.2	70.0
C2	N	C3	H32C	128.2	190.0
C2	N	C3	H33C	248.2	310.0
C5	C4	N	C2	242.7	55.3
C2	N	C4	H41C	122.2	295.3
C2	N	C4	H42C	3.3	175.2
H21C	C2	N	H22C	240.0	240.0
H21C	C2	N	H23C	120.0	120.0
H22C	C2	N	H23C	240.0	240.0
C2	N	C3	C1	188.2	119.9
C1	N	C3	C4	266.1	120.0
C3	N	C1	H11C	10.7	180.0
C3	N	C1	H12C	130.7	300.0
C3	N	C1	H13C	250.7	60.0
C2	N	C3	C4	94.3	239.9
C3	N	C2	H21C	349.3	60.0
C3	N	C2	H22C	109.4	180.0
C3	N	C2	H23C	229.4	300.1
C5	C4	N	C3	354.5	295.2
C3	N	C4	H41C	234.0	175.2
C3	N	C4	H42C	115.1	55.2
H31C	C3	N	H32C	240.0	240.0
H31C	C3	N	H33C	120.0	120.0
H32C	C3	N	H33C	240.0	240.0
C1	N	C4	C5	106.7	175.2
C2	N	C4	C5	242.7	55.3
C3	N	C4	C5	354.5	295.2
N	C4	C5	H41C	239.5	240.0
N	C4	C5	H42C	120.6	120.1
C4	C5	O1	P	194.2	180.0
O1	C5	C4	H51C	240.5	240.0
O1	C5	C4	H52C	119.5	120.0
H41C	C4	C5	H42C	241.1	240.1
H51C	C5	C4	H52C	238.9	239.9
C2	N	C4	C1	136.1	240.0
C3	N	C4	C1	247.8	119.9
C4	N	C1	H11C	256.2	300.0
C4	N	C1	H12C	16.2	59.9
C4	N	C1	H13C	136.2	180.0
C2	N	C4	C3	248.2	120.1
C4	N	C2	H21C	104.0	300.0
C4	N	C2	H22C	224.1	59.9
C4	N	C2	H23C	344.1	180.0
C4	N	C3	H31C	273.9	190.1
C4	N	C3	H32C	33.9	310.1
C4	N	C3	H33C	153.8	70.1
N	C4	C5	O1	205.7	67.7
C5	C4	N	H41C	120.5	120.0
C5	C4	N	H42C	239.4	240.0
N	C4	C5	H51C	325.2	187.6
N	C4	C5	H52C	86.3	307.7
H41C	C4	N	H42C	118.9	120.1
O1	C5	C4	N	205.7	67.7
O1	C5	C4	H41C	326.2	187.7
O1	C5	C4	H42C	85.2	307.6
C4	C5	O1	H51C	119.5	120.0
C4	C5	O1	H52C	240.5	240.0
O3	P	O1	C5	271.6	295.0
O4	P	O1	C5	24.2	55.0
C5	O1	P	O2	148.7	175.0
H51C	C5	O1	H52C	121.0	120.0
C11	C10	C9	C8	180.6	180.0
C11	C10	C9	CAI	359.4	360.0
C9	C10	C11	H10	180.0	179.7
C10	C11	C12	H12	180.0	180.0
C9	C10	C11	C12	0.3	0.1
C11	C10	C9	H10	180.0	180.3
C9	C10	C11	H11	180.3	179.9
C7	C8	C9	C10	276.6	90.0
C10	C9	C8	H81C	156.2	330.0
C10	C9	C8	H82C	37.1	210.0
C10	C9	CAI	HAI	180.7	179.9
C12	C11	C10	H10	180.3	180.4
C10	C11	C12	H11	180.0	179.9
C11	C12	C13	H13	180.0	180.0
C7	C6	O2	P	116.4	180.0
O2	C6	C7	H61C	239.6	239.9
O2	C6	C7	H62C	120.4	120.0
C6	C7	C8	C9	66.7	180.0
C8	C7	C6	H71C	239.5	239.9
C8	C7	C6	H72C	120.5	120.0
C6	C7	C8	H81C	187.2	300.1
C6	C7	C8	H82C	306.2	60.0
H61C	C6	C7	H62C	240.8	240.1
H71C	C7	C6	H72C	240.9	240.0
O2	C6	C7	C8	113.1	179.9
C7	C6	O2	H61C	120.4	120.0
C7	C6	O2	H62C	239.6	240.0
O2	C6	C7	H71C	233.6	300.0
O2	C6	C7	H72C	352.6	60.0
O3	P	O2	C6	194.3	65.0
O4	P	O2	C6	80.1	305.0
O1	P	O2	C6	316.7	185.0
H61C	C6	O2	H62C	119.2	120.0
C10	C9	C8	C7	276.6	90.0
C8	C7	C6	O2	113.1	179.9
C8	C7	C6	H61C	233.5	300.0
C8	C7	C6	H62C	352.7	59.9
C6	C7	C8	H71C	120.5	120.1
C6	C7	C8	H72C	239.5	240.0
C9	C8	C7	H81C	239.5	239.9
C9	C8	C7	H82C	120.5	120.0
H71C	C7	C8	H72C	119.1	120.0
H81C	C8	C7	H82C	241.0	240.0
C8	C9	C10	C11	180.6	180.0
C10	C9	C8	CAI	178.8	180.0
C8	C9	C10	H10	0.6	359.7
C9	C8	C7	H71C	306.2	59.9
C9	C8	C7	H72C	187.1	300.0
C7	C8	C9	H81C	120.5	120.1
C7	C8	C9	H82C	239.5	240.1
C8	C9	CAI	HAI	359.5	359.9
H81C	C8	C9	H82C	119.1	120.0
CAI	C9	C10	C11	359.4	360.0
C10	C9	CAI	C8	181.2	180.0
CAI	C9	C10	H10	179.4	179.7
C13	CAI	C9	HAI	180.0	180.1
C5	O1	P	O3	271.6	295.0
C6	O2	P	O3	194.3	65.0
O4	P	O3	O1	241.0	240.0
O4	P	O3	O2	121.4	120.0
O1	P	O3	O2	240.4	240.0
C5	O1	P	O4	24.2	55.0
C6	O2	P	O4	80.1	305.0
O3	P	O4	O1	118.8	120.0
O3	P	O4	O2	239.5	240.0
O1	P	O4	O2	120.7	120.0
P	O1	C5	H51C	74.8	60.0
P	O1	C5	H52C	313.7	300.0
C6	O2	P	O1	316.7	185.0
O3	P	O1	O4	247.4	240.0
O3	P	O1	O2	122.8	120.0
O4	P	O1	O2	235.5	240.0
P	O2	C6	H61C	356.0	60.0
P	O2	C6	H62C	236.8	300.0
O3	P	O2	O4	114.2	120.0
O3	P	O2	O1	237.6	240.0
O4	P	O2	O1	123.4	120.0
C10	C11	C12	C13	360.0	359.9
C12	C13	CAI	HAI	179.6	180.0
C10	C9	CAI	C13	0.7	360.0
C9	CAI	C13	HAI	180.0	179.9
H11C	C1	N	C4	256.2	300.0
N	C1	H11C	H12C	120.0	120.0
N	C1	H11C	H13C	240.0	240.0
H12C	C1	H11C	H13C	120.0	120.0
H12C	C1	N	C4	16.2	59.9
N	C1	H12C	H11C	240.0	240.0
N	C1	H12C	H13C	120.0	120.1
H11C	C1	H12C	H13C	240.0	240.1
H13C	C1	N	C4	136.2	180.0
N	C1	H13C	H11C	120.0	120.0
N	C1	H13C	H12C	240.0	239.9
H11C	C1	H13C	H12C	120.0	119.9
H21C	C2	N	C1	180.0	180.0
H21C	C2	N	C3	349.3	60.0
H21C	C2	N	C4	104.0	300.0
N	C2	H21C	H22C	120.0	120.0
N	C2	H21C	H23C	240.0	240.0
H22C	C2	H21C	H23C	120.0	120.0
H22C	C2	N	C1	300.0	299.9
H22C	C2	N	C3	109.4	180.0
H22C	C2	N	C4	224.1	59.9
N	C2	H22C	H21C	240.0	240.1
N	C2	H22C	H23C	120.0	120.0
H21C	C2	H22C	H23C	240.0	240.0
H23C	C2	N	C1	60.0	60.0
H23C	C2	N	C3	229.4	300.1
H23C	C2	N	C4	344.1	180.0
N	C2	H23C	H21C	120.0	119.9
N	C2	H23C	H22C	240.0	239.9
H21C	C2	H23C	H22C	120.0	120.0
H31C	C3	N	C1	180.0	310.1
H31C	C3	N	C4	273.9	190.1
N	C3	H31C	H32C	120.0	120.0
N	C3	H31C	H33C	240.0	240.0
H32C	C3	H31C	H33C	120.0	120.0
H32C	C3	N	C1	300.0	70.1
H32C	C3	N	C4	33.9	310.1
N	C3	H32C	H31C	240.0	240.0
N	C3	H32C	H33C	120.0	120.0
H31C	C3	H32C	H33C	240.0	240.0
H33C	C3	N	C1	60.0	190.0
H33C	C3	N	C4	153.8	70.1
N	C3	H33C	H31C	120.0	120.0
N	C3	H33C	H32C	240.0	240.0
H31C	C3	H33C	H32C	120.0	120.0
C5	C4	H41C	N	236.6	240.0
H41C	C4	C5	O1	326.2	187.7
C5	C4	H41C	H42C	118.3	119.9
H41C	C4	C5	H51C	85.7	307.6
H41C	C4	C5	H52C	206.8	67.7
N	C4	H41C	H42C	241.7	239.9
C5	C4	H42C	N	123.4	120.0
H42C	C4	C5	O1	85.2	307.6
C5	C4	H42C	H41C	241.7	240.1
H42C	C4	C5	H51C	204.6	67.6
H42C	C4	C5	H52C	325.7	187.6
N	C4	H42C	H41C	118.3	120.1
H51C	C5	C4	N	325.2	187.6
C4	C5	H51C	O1	243.1	240.0
H51C	C5	C4	H41C	85.7	307.6
H51C	C5	C4	H42C	204.6	67.6
C4	C5	H51C	H52C	121.6	120.0
H51C	C5	O1	P	74.8	60.0
O1	C5	H51C	H52C	238.5	240.0
H52C	C5	C4	N	86.3	307.7
C4	C5	H52C	O1	116.9	120.0
H52C	C5	C4	H41C	206.8	67.7
H52C	C5	C4	H42C	325.7	187.6
C4	C5	H52C	H51C	238.4	239.9
H52C	C5	O1	P	313.7	300.0
O1	C5	H52C	H51C	121.6	120.0
C9	C10	H10	C11	180.0	180.3
H10	C10	C11	C12	180.3	180.4
H10	C10	C11	H11	0.3	0.2
H10	C10	C9	C8	0.6	359.7
H10	C10	C9	CAI	179.4	179.7
C10	C11	H11	C12	180.0	180.1
H11	C11	C10	H10	0.3	0.2
H11	C11	C12	H12	0.0	0.1
H12	C12	C13	H13	0.0	360.0
C7	C6	H61C	O2	237.7	240.0
H61C	C6	C7	C8	233.5	300.0
C7	C6	H61C	H62C	118.9	119.9
H61C	C6	C7	H71C	353.9	60.1
H61C	C6	C7	H72C	113.0	180.0
H61C	C6	O2	P	356.0	60.0
O2	C6	H61C	H62C	241.2	240.0
C7	C6	H62C	O2	122.3	120.0
H62C	C6	C7	C8	352.7	59.9
C7	C6	H62C	H61C	241.2	240.1
H62C	C6	C7	H71C	113.2	180.0
H62C	C6	C7	H72C	232.2	300.0
H62C	C6	O2	P	236.8	300.0
O2	C6	H62C	H61C	118.9	120.1
H71C	C7	C6	O2	233.6	300.0
C6	C7	H71C	C8	237.2	240.0
H71C	C7	C6	H61C	353.9	60.1
H71C	C7	C6	H62C	113.2	180.0
C6	C7	H71C	H72C	118.6	120.0
H71C	C7	C8	C9	306.2	59.9
C8	C7	H71C	H72C	241.4	240.0
H71C	C7	C8	H81C	66.7	180.0
H71C	C7	C8	H82C	185.7	300.0
H72C	C7	C6	O2	352.6	60.0
C6	C7	H72C	C8	122.8	120.0
H72C	C7	C6	H61C	113.0	180.0
H72C	C7	C6	H62C	232.2	300.0
C6	C7	H72C	H71C	241.4	240.0
H72C	C7	C8	C9	187.1	300.0
C8	C7	H72C	H71C	118.6	120.0
H72C	C7	C8	H81C	307.6	60.0
H72C	C7	C8	H82C	66.7	180.0
C7	C8	H81C	C9	237.1	240.0
H81C	C8	C7	H71C	66.7	180.0
H81C	C8	C7	H72C	307.6	60.0
C7	C8	H81C	H82C	118.5	120.0
C9	C8	H81C	H82C	241.4	240.0
C7	C8	H82C	C9	122.9	120.0
H82C	C8	C7	H71C	185.7	300.0
H82C	C8	C7	H72C	66.7	180.0
C7	C8	H82C	H81C	241.5	240.0
C9	C8	H82C	H81C	118.6	120.0
H13	C13	CAI	HAI	359.6	0.1