Atom Nomenclature for C6W

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for C6W

Atom Name (V3) Atom Name (V2)
C2 C2
C3 C3
C1 C1
C4 C4
C5 C5
C10 C10
CAI CAI
C13 C13
C6 C6
C7 C7
C9 C9
O3 O3
P P
O4 O4
O1 O1
N N
O2 O2
C8 C8
C12 C12
C11 C11
H11C H11C
H12C H12C
H13C H13C
H21C H21C
H22C H22C
H23C H23C
H31C H31C
H32C H32C
H33C H33C
H41C H41C
H42C H42C
H51C H51C
H52C H52C
H10 H10
H11 H11
H12 H12
H61C H61C
H62C H62C
H71C H71C
H72C H72C
H81C H81C
H82C H82C
HAI HAI
H13 H13