PDB Chemical Component C6T
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C6T
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C2 |
1.212 |
1.216 |
| C2 |
N3 |
1.325 |
1.346 |
| C2 |
N1 |
1.333 |
1.346 |
| N3 |
C4 |
1.350 |
1.349 |
| C2' |
C1' |
1.307 |
1.545 |
| C2' |
C3' |
1.531 |
1.545 |
| C1' |
N1 |
1.454 |
1.466 |
| C1' |
O4' |
1.586 |
1.444 |
| N1 |
C6 |
1.343 |
1.368 |
| O3' |
C3' |
1.399 |
1.429 |
| C4 |
O4 |
1.388 |
1.217 |
| C4 |
C5 |
1.405 |
1.416 |
| C3' |
C4' |
1.535 |
1.545 |
| O4' |
C4' |
1.293 |
1.444 |
| C6 |
C5 |
1.409 |
1.350 |
| C4' |
C5' |
1.572 |
1.530 |
| C5 |
C7 |
1.527 |
1.507 |
| O1B |
PB |
1.599 |
1.480 |
| C5' |
O5' |
1.428 |
1.429 |
| O5' |
PA |
1.595 |
1.610 |
| PB |
N3A |
1.692 |
1.682 |
| PB |
O2B |
1.569 |
1.610 |
| PB |
C3B |
1.834 |
1.823 |
| N3A |
PA |
1.682 |
1.683 |
| C3B |
PG |
1.829 |
1.823 |
| PA |
O2A |
1.510 |
1.480 |
| PA |
O1A |
1.524 |
1.610 |
| PG |
O2G |
1.500 |
1.480 |
| PG |
O3G |
1.519 |
1.611 |
| PG |
O1G |
1.508 |
1.610 |
| C7 |
H1 |
1.100 |
1.090 |
| C7 |
H2 |
1.100 |
1.090 |
| C7 |
H3 |
1.100 |
1.091 |
| C6 |
H4 |
1.080 |
1.081 |
| N3 |
H5 |
1.000 |
0.970 |
| C1' |
H6 |
1.100 |
1.089 |
| C2' |
H7 |
1.100 |
1.090 |
| C2' |
H8 |
1.100 |
1.090 |
| C3' |
H9 |
1.101 |
1.090 |
| O3' |
H10 |
0.950 |
0.967 |
| C4' |
H11 |
1.100 |
1.090 |
| C5' |
H12 |
1.100 |
1.090 |
| C5' |
H13 |
1.100 |
1.090 |
| O1A |
H14 |
0.950 |
0.967 |
| N3A |
H15 |
1.000 |
1.009 |
| O2B |
H16 |
0.950 |
0.967 |
| C3B |
H17 |
1.100 |
1.090 |
| C3B |
H18 |
1.100 |
1.090 |
| O1G |
H19 |
0.950 |
0.967 |
| O3G |
H20 |
0.950 |
0.966 |
Bond Angles for C6T
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C2 |
N1 |
118.3 |
119.5 |
| C2 |
N3 |
H5 |
120.9 |
119.9 |
| C2' |
C1' |
O4' |
104.9 |
104.8 |
| C2' |
C1' |
H6 |
113.2 |
110.5 |
| C2' |
C3' |
C4' |
99.0 |
104.1 |
| C3' |
C2' |
H7 |
110.0 |
110.5 |
| C3' |
C2' |
H8 |
110.0 |
110.5 |
| C2' |
C3' |
H9 |
108.6 |
110.5 |
| C1' |
O4' |
C4' |
108.1 |
105.3 |
| O4' |
C1' |
H6 |
108.9 |
110.4 |
| N1 |
C6 |
H4 |
120.4 |
120.1 |
| O3' |
C3' |
C4' |
114.9 |
110.5 |
| O3' |
C3' |
H9 |
110.4 |
110.6 |
| C4 |
C5 |
C7 |
121.7 |
120.4 |
| C3' |
C4' |
O4' |
103.8 |
104.8 |
| C3' |
C4' |
C5' |
111.4 |
110.4 |
| C4' |
C3' |
H9 |
108.5 |
110.5 |
| C3' |
C4' |
H11 |
109.2 |
110.4 |
| O4' |
C4' |
C5' |
110.7 |
110.4 |
| O4' |
C4' |
H11 |
113.0 |
110.3 |
| C4' |
C5' |
O5' |
107.8 |
109.4 |
| C5' |
C4' |
H11 |
108.7 |
110.4 |
| C4' |
C5' |
H12 |
109.9 |
109.5 |
| C4' |
C5' |
H13 |
109.9 |
109.5 |
| C5 |
C7 |
H1 |
109.5 |
109.5 |
| C5 |
C7 |
H2 |
109.5 |
109.5 |
| C5 |
C7 |
H3 |
109.5 |
109.4 |
| O1B |
PB |
O2B |
114.0 |
109.5 |
| O1B |
PB |
C3B |
106.3 |
109.5 |
| C5' |
O5' |
PA |
118.5 |
123.0 |
| O5' |
C5' |
H12 |
109.9 |
109.5 |
| O5' |
C5' |
H13 |
109.9 |
109.4 |
| O5' |
PA |
O2A |
107.5 |
109.5 |
| O5' |
PA |
O1A |
107.0 |
109.5 |
| PB |
N3A |
H15 |
104.8 |
111.0 |
| O2B |
PB |
C3B |
109.4 |
109.5 |
| PB |
O2B |
H16 |
109.5 |
114.0 |
| PB |
C3B |
PG |
115.9 |
109.5 |
| PB |
C3B |
H17 |
107.8 |
109.5 |
| PB |
C3B |
H18 |
107.8 |
109.4 |
| C3B |
PG |
O2G |
107.6 |
109.5 |
| C3B |
PG |
O3G |
105.5 |
109.5 |
| C3B |
PG |
O1G |
111.9 |
109.5 |
| PG |
C3B |
H17 |
107.8 |
109.5 |
| PG |
C3B |
H18 |
107.8 |
109.5 |
| O1A |
PA |
O2A |
111.4 |
109.5 |
| PA |
O1A |
H14 |
109.5 |
114.1 |
| O2G |
PG |
O3G |
110.0 |
109.4 |
| O2G |
PG |
O1G |
109.5 |
109.4 |
| O1G |
PG |
O3G |
112.1 |
109.5 |
| PG |
O3G |
H20 |
109.5 |
114.0 |
| PG |
O1G |
H19 |
109.5 |
114.0 |
| H1 |
C7 |
H2 |
109.5 |
109.5 |
| H1 |
C7 |
H3 |
109.5 |
109.5 |
| H2 |
C7 |
H3 |
109.4 |
109.4 |
| H7 |
C2' |
H8 |
109.5 |
110.6 |
| H12 |
C5' |
H13 |
109.5 |
109.5 |
| H17 |
C3B |
H18 |
109.5 |
109.5 |
Torsion Angles for C6T
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C2 |
N3 |
H5 |
0.7 |
359.9 |
| N1 |
C2 |
N3 |
H5 |
180.3 |
180.0 |
| C2 |
N1 |
C6 |
H4 |
181.2 |
179.7 |
| C2' |
C1' |
O4' |
C4' |
352.8 |
319.5 |
| O4' |
C1' |
C2' |
H6 |
118.7 |
118.9 |
| C3' |
C2' |
C1' |
O4' |
340.3 |
24.0 |
| C3' |
C2' |
C1' |
H6 |
221.6 |
265.1 |
| O3' |
C3' |
C2' |
C4' |
122.8 |
118.6 |
| O3' |
C3' |
C2' |
H9 |
235.9 |
237.3 |
| C2' |
C3' |
C4' |
O4' |
319.9 |
336.0 |
| C2' |
C3' |
C4' |
C5' |
200.7 |
217.2 |
| C4' |
C3' |
C2' |
H9 |
113.1 |
118.7 |
| C2' |
C3' |
C4' |
H11 |
80.6 |
94.8 |
| H7 |
C2' |
C3' |
H8 |
120.7 |
122.7 |
| C1' |
N1 |
C6 |
H4 |
358.1 |
360.0 |
| C2' |
C1' |
O4' |
H6 |
238.5 |
241.0 |
| C3' |
C4' |
O4' |
C1' |
30.1 |
40.5 |
| C1' |
O4' |
C4' |
C5' |
149.7 |
159.3 |
| C1' |
O4' |
C4' |
H11 |
272.0 |
281.7 |
| C2' |
C3' |
O3' |
C4' |
246.2 |
245.4 |
| O3' |
C3' |
C2' |
H7 |
39.5 |
360.0 |
| O3' |
C3' |
C2' |
H8 |
278.8 |
237.2 |
| C2' |
C3' |
O3' |
H9 |
123.1 |
122.7 |
| O3' |
C3' |
C4' |
O4' |
197.2 |
217.4 |
| O3' |
C3' |
C4' |
C5' |
78.0 |
98.5 |
| C4' |
C3' |
O3' |
H9 |
236.9 |
237.3 |
| O3' |
C3' |
C4' |
H11 |
317.9 |
336.2 |
| C4 |
C5 |
C7 |
H1 |
180.0 |
360.0 |
| C4 |
C5 |
C7 |
H2 |
300.0 |
120.0 |
| C4 |
C5 |
C7 |
H3 |
60.0 |
239.9 |
| C4' |
C3' |
C2' |
H7 |
276.7 |
241.3 |
| C4' |
C3' |
C2' |
H8 |
156.0 |
118.6 |
| C2' |
C3' |
C4' |
H9 |
246.8 |
241.3 |
| C1' |
O4' |
C4' |
C3' |
30.1 |
40.5 |
| O3' |
C3' |
C4' |
H9 |
124.1 |
122.7 |
| O4' |
C4' |
C3' |
C5' |
119.1 |
118.9 |
| O4' |
C4' |
C3' |
H11 |
239.3 |
241.2 |
| C3' |
C4' |
C5' |
O5' |
66.3 |
185.0 |
| C5' |
C4' |
C3' |
H11 |
120.1 |
122.3 |
| C3' |
C4' |
C5' |
H12 |
186.0 |
305.0 |
| C3' |
C4' |
C5' |
H13 |
306.5 |
65.1 |
| C4' |
O4' |
C1' |
H6 |
114.3 |
78.4 |
| C3' |
C4' |
O4' |
C5' |
240.4 |
241.2 |
| O4' |
C4' |
C3' |
H9 |
73.1 |
94.7 |
| C3' |
C4' |
O4' |
H11 |
118.1 |
118.8 |
| O4' |
C4' |
C5' |
O5' |
311.3 |
69.6 |
| C5' |
C4' |
O4' |
H11 |
237.8 |
237.6 |
| O4' |
C4' |
C5' |
H12 |
71.1 |
189.6 |
| O4' |
C4' |
C5' |
H13 |
191.6 |
309.7 |
| C6 |
C5 |
C7 |
H1 |
358.2 |
180.0 |
| C6 |
C5 |
C7 |
H2 |
118.2 |
300.1 |
| C6 |
C5 |
C7 |
H3 |
238.1 |
60.0 |
| C3' |
C4' |
C5' |
O4' |
114.9 |
115.4 |
| C5' |
C4' |
C3' |
H9 |
313.9 |
335.8 |
| C3' |
C4' |
C5' |
H11 |
239.6 |
237.7 |
| O4' |
C4' |
C5' |
H11 |
124.7 |
122.3 |
| C4' |
C5' |
O5' |
PA |
227.0 |
180.0 |
| O5' |
C5' |
C4' |
H12 |
240.2 |
240.0 |
| O5' |
C5' |
C4' |
H13 |
119.7 |
119.9 |
| H12 |
C5' |
C4' |
H13 |
239.5 |
239.9 |
| H1 |
C7 |
C5 |
H2 |
240.0 |
239.9 |
| H1 |
C7 |
C5 |
H3 |
120.0 |
120.0 |
| H2 |
C7 |
C5 |
H3 |
240.0 |
240.1 |
| O1B |
PB |
N3A |
H15 |
260.9 |
184.0 |
| O2B |
PB |
O1B |
C3B |
239.4 |
240.0 |
| O1B |
PB |
O2B |
H16 |
0.0 |
180.0 |
| O1B |
PB |
C3B |
PG |
206.0 |
300.0 |
| O1B |
PB |
C3B |
H17 |
326.9 |
60.0 |
| O1B |
PB |
C3B |
H18 |
85.0 |
180.0 |
| O5' |
C5' |
C4' |
H11 |
186.6 |
307.3 |
| C4' |
C5' |
O5' |
H12 |
119.8 |
120.0 |
| C4' |
C5' |
O5' |
H13 |
240.3 |
240.1 |
| C5' |
O5' |
PA |
O2A |
186.5 |
50.0 |
| C5' |
O5' |
PA |
O1A |
306.2 |
170.1 |
| H12 |
C5' |
O5' |
H13 |
120.5 |
120.1 |
| PA |
O5' |
C5' |
H12 |
107.3 |
60.0 |
| PA |
O5' |
C5' |
H13 |
346.8 |
299.9 |
| O1A |
PA |
O5' |
O2A |
119.7 |
120.0 |
| O5' |
PA |
O1A |
H14 |
242.8 |
60.0 |
| O1B |
PB |
O2B |
C3B |
118.9 |
120.0 |
| O2B |
PB |
N3A |
H15 |
135.3 |
64.0 |
| O2B |
PB |
C3B |
PG |
329.5 |
60.0 |
| O2B |
PB |
C3B |
H17 |
90.4 |
180.0 |
| O2B |
PB |
C3B |
H18 |
208.6 |
300.0 |
| O1B |
PB |
C3B |
O2B |
236.5 |
240.0 |
| C3B |
PB |
N3A |
H15 |
14.8 |
304.0 |
| C3B |
PB |
O2B |
H16 |
241.2 |
60.0 |
| PB |
C3B |
PG |
O2G |
93.5 |
300.0 |
| PB |
C3B |
PG |
O3G |
336.0 |
180.0 |
| PB |
C3B |
PG |
O1G |
213.8 |
60.0 |
| PG |
C3B |
PB |
H17 |
239.0 |
240.0 |
| PG |
C3B |
PB |
H18 |
120.9 |
120.0 |
| H17 |
C3B |
PB |
H18 |
241.9 |
240.0 |
| N3A |
PA |
O1A |
H14 |
125.6 |
300.0 |
| PB |
C3B |
PG |
H17 |
120.9 |
120.0 |
| PB |
C3B |
PG |
H18 |
239.1 |
240.0 |
| O2G |
PG |
C3B |
O3G |
117.5 |
120.0 |
| O2G |
PG |
C3B |
O1G |
239.7 |
240.0 |
| O1G |
PG |
C3B |
O3G |
237.8 |
240.0 |
| C3B |
PG |
O3G |
H20 |
115.8 |
180.0 |
| C3B |
PG |
O1G |
H19 |
240.8 |
59.9 |
| H17 |
C3B |
PG |
H18 |
118.1 |
120.0 |
| O5' |
PA |
O2A |
O1A |
116.9 |
120.0 |
| O2A |
PA |
O1A |
H14 |
0.0 |
180.0 |
| O5' |
PA |
O1A |
O2A |
242.8 |
240.0 |
| C3B |
PG |
O2G |
O3G |
245.5 |
240.0 |
| C3B |
PG |
O2G |
O1G |
121.8 |
120.0 |
| O2G |
PG |
C3B |
H17 |
332.6 |
180.0 |
| O2G |
PG |
C3B |
H18 |
214.4 |
60.0 |
| O1G |
PG |
O2G |
O3G |
123.7 |
119.9 |
| O2G |
PG |
O3G |
H20 |
0.0 |
60.0 |
| O2G |
PG |
O1G |
H19 |
360.0 |
180.0 |
| C3B |
PG |
O3G |
O2G |
115.8 |
120.0 |
| C3B |
PG |
O3G |
O1G |
237.9 |
240.0 |
| O3G |
PG |
C3B |
H17 |
215.1 |
60.0 |
| O3G |
PG |
C3B |
H18 |
97.0 |
300.0 |
| O2G |
PG |
O3G |
O1G |
122.1 |
119.9 |
| O3G |
PG |
O1G |
H19 |
122.4 |
299.9 |
| C3B |
PG |
O1G |
O2G |
240.8 |
240.0 |
| C3B |
PG |
O1G |
O3G |
118.4 |
120.0 |
| O1G |
PG |
C3B |
H17 |
92.9 |
300.0 |
| O1G |
PG |
C3B |
H18 |
334.7 |
180.0 |
| O2G |
PG |
O1G |
O3G |
237.6 |
240.1 |
| O1G |
PG |
O3G |
H20 |
237.9 |
300.0 |
| C5 |
C7 |
H1 |
H2 |
120.0 |
120.0 |
| C5 |
C7 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C7 |
H1 |
H3 |
120.0 |
120.0 |
| C5 |
C7 |
H2 |
H1 |
240.0 |
240.0 |
| C5 |
C7 |
H2 |
H3 |
120.0 |
119.9 |
| H1 |
C7 |
H2 |
H3 |
240.0 |
240.0 |
| C5 |
C7 |
H3 |
H1 |
120.1 |
120.0 |
| C5 |
C7 |
H3 |
H2 |
240.0 |
240.1 |
| H1 |
C7 |
H3 |
H2 |
120.0 |
120.1 |
| C2' |
C1' |
H6 |
O4' |
116.3 |
115.4 |
| H6 |
C1' |
O4' |
C4' |
114.3 |
78.4 |
| H7 |
C2' |
C1' |
O4' |
99.9 |
142.6 |
| H7 |
C2' |
C1' |
H6 |
341.2 |
23.7 |
| H7 |
C2' |
C3' |
C4' |
276.7 |
241.3 |
| C3' |
C2' |
H7 |
H8 |
238.9 |
237.3 |
| H7 |
C2' |
C3' |
H9 |
163.6 |
122.7 |
| H8 |
C2' |
C1' |
O4' |
220.6 |
265.4 |
| H8 |
C2' |
C1' |
H6 |
101.9 |
146.5 |
| H8 |
C2' |
C3' |
C4' |
156.0 |
118.6 |
| C3' |
C2' |
H8 |
H7 |
121.0 |
122.7 |
| H8 |
C2' |
C3' |
H9 |
42.9 |
360.0 |
| C2' |
C3' |
H9 |
C4' |
106.6 |
114.7 |
| H9 |
C3' |
C2' |
H7 |
163.6 |
122.7 |
| H9 |
C3' |
C2' |
H8 |
42.9 |
360.0 |
| O3' |
C3' |
H9 |
C4' |
233.3 |
237.4 |
| H9 |
C3' |
C4' |
O4' |
73.1 |
94.7 |
| H9 |
C3' |
C4' |
C5' |
313.9 |
335.8 |
| H9 |
C3' |
C4' |
H11 |
193.8 |
213.5 |
| H10 |
O3' |
C3' |
C4' |
254.7 |
176.1 |
| H10 |
O3' |
C3' |
H9 |
17.8 |
298.7 |
| C3' |
C4' |
H11 |
O4' |
245.1 |
244.7 |
| C3' |
C4' |
H11 |
C5' |
121.8 |
122.3 |
| H11 |
C4' |
C3' |
H9 |
193.8 |
213.5 |
| O4' |
C4' |
H11 |
C5' |
236.7 |
237.6 |
| H11 |
C4' |
C5' |
O5' |
186.6 |
307.3 |
| H11 |
C4' |
C5' |
H12 |
306.4 |
67.3 |
| H11 |
C4' |
C5' |
H13 |
66.9 |
187.4 |
| C4' |
C5' |
H12 |
O5' |
241.5 |
240.0 |
| H12 |
C5' |
C4' |
H11 |
306.4 |
67.3 |
| C4' |
C5' |
H12 |
H13 |
120.7 |
120.0 |
| H12 |
C5' |
O5' |
PA |
107.3 |
60.0 |
| O5' |
C5' |
H12 |
H13 |
239.2 |
240.0 |
| C4' |
C5' |
H13 |
O5' |
118.5 |
119.9 |
| H13 |
C5' |
C4' |
H11 |
66.9 |
187.4 |
| C4' |
C5' |
H13 |
H12 |
239.2 |
240.0 |
| H13 |
C5' |
O5' |
PA |
346.8 |
299.9 |
| O5' |
C5' |
H13 |
H12 |
120.8 |
120.0 |
| H14 |
O1A |
PA |
O2A |
0.0 |
180.0 |
| H16 |
O2B |
PB |
C3B |
241.2 |
60.0 |
| PB |
C3B |
H17 |
PG |
234.1 |
240.0 |
| PB |
C3B |
H17 |
H18 |
117.1 |
120.0 |
| H17 |
C3B |
PG |
O2G |
332.6 |
180.0 |
| H17 |
C3B |
PG |
O3G |
215.1 |
60.0 |
| H17 |
C3B |
PG |
O1G |
92.9 |
300.0 |
| PG |
C3B |
H17 |
H18 |
242.9 |
240.0 |
| PB |
C3B |
H18 |
PG |
125.9 |
120.0 |
| PB |
C3B |
H18 |
H17 |
242.9 |
240.0 |
| H18 |
C3B |
PG |
O2G |
214.4 |
60.0 |
| H18 |
C3B |
PG |
O3G |
97.0 |
300.0 |
| H18 |
C3B |
PG |
O1G |
334.7 |
180.0 |
| PG |
C3B |
H18 |
H17 |
117.1 |
120.0 |
| H19 |
O1G |
PG |
O3G |
122.4 |
299.9 |