PDB Chemical Component C6P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C6P

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	CA	1.458	1.441
N	C4A	1.446	1.462
N	HN	1.000	1.025
C	O	1.240	1.225
C	CA	1.506	1.520
C	OXT	1.193	1.355
P	OP2	1.475	1.501
P	OP1	1.479	1.617
P	OP3	1.486	1.617
P	OP4	1.594	1.616
OP3	HOP3	0.950	0.981
OP1	HOP1	0.950	0.981
OP4	C5M	1.418	1.422
C5M	C5	1.522	1.489
C5M	H5M1	1.101	1.099
C5M	H5M2	1.100	1.099
C5	C4	1.520	1.387
C5	C6	1.517	1.386
C6	N1	1.445	1.352
C6	H6	1.080	1.086
N1	C2	1.439	1.352
C2	C3	1.509	1.385
C2	C2A	1.519	1.494
C2A	H2A1	1.100	1.097
C2A	H2A2	1.100	1.096
C2A	H2A3	1.100	1.098
C3	C4	1.515	1.387
C3	O3	1.416	1.359
O3	HO3	0.950	0.971
C4	C4A	1.524	1.502
C4A	H4A1	1.100	1.095
C4A	H4A2	1.101	1.095
CA	CB	1.530	1.531
CA	HA	1.101	1.096
OXT	HOXT	0.949	0.981
CB	SG	1.811	1.824
CB	HB1	1.100	1.095
CB	HB2	1.100	1.095
SG	HSG	1.300	1.339

Bond Angles for C6P

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4A	N	CA	125.0	111.5
CA	N	HN	104.6	110.0
N	CA	C	106.5	111.9
N	CA	CB	110.9	112.0
N	CA	HA	110.1	105.3
C4A	N	HN	104.6	108.5
N	C4A	C4	110.4	112.0
N	C4A	H4A1	109.2	107.9
N	C4A	H4A2	108.9	107.8
O	C	CA	119.5	123.8
O	C	OXT	110.4	122.9
CA	C	OXT	130.1	113.3
C	CA	CB	108.5	112.3
C	CA	HA	112.5	106.1
C	OXT	HOXT	109.5	112.0
OP1	P	OP2	113.2	115.0
OP3	P	OP2	114.6	115.3
OP2	P	OP4	103.6	115.1
OP3	P	OP1	113.1	103.3
OP1	P	OP4	105.7	102.7
P	OP1	HOP1	109.5	118.9
OP3	P	OP4	105.3	103.8
P	OP3	HOP3	109.5	118.9
P	OP4	C5M	121.3	118.3
OP4	C5M	C5	111.7	109.5
OP4	C5M	H5M1	108.8	108.6
OP4	C5M	H5M2	108.2	108.6
C5	C5M	H5M1	108.7	111.5
C5	C5M	H5M2	108.3	111.2
C5M	C5	C4	120.8	122.3
C5M	C5	C6	117.7	120.1
H5M1	C5M	H5M2	111.2	107.3
C6	C5	C4	121.5	117.6
C5	C4	C3	117.8	120.3
C5	C4	C4A	120.5	120.0
C5	C6	N1	116.8	124.0
C5	C6	H6	121.6	121.3
N1	C6	H6	121.6	114.7
C6	N1	C2	124.8	116.3
N1	C2	C3	120.0	124.1
N1	C2	C2A	119.8	115.8
C2A	C2	C3	120.2	120.1
C2	C3	C4	119.1	117.6
C2	C3	O3	119.2	121.1
C2	C2A	H2A1	109.5	110.3
C2	C2A	H2A2	109.4	111.2
C2	C2A	H2A3	109.5	111.1
H2A1	C2A	H2A2	109.5	108.6
H2A1	C2A	H2A3	109.4	108.6
H2A2	C2A	H2A3	109.5	106.9
O3	C3	C4	121.8	121.3
C3	C4	C4A	121.7	119.7
C3	O3	HO3	109.5	110.4
C4	C4A	H4A1	109.1	110.6
C4	C4A	H4A2	108.9	111.0
H4A1	C4A	H4A2	110.2	107.3
CB	CA	HA	108.3	108.8
CA	CB	SG	117.0	113.8
CA	CB	HB1	107.0	109.9
CA	CB	HB2	105.3	110.4
SG	CB	HB1	107.1	107.3
SG	CB	HB2	105.3	107.6
CB	SG	HSG	109.5	95.7
HB1	CB	HB2	115.6	107.6

Torsion Angles for C6P

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4A	N	CA	HN	240.0	120.4
CA	N	C4A	C4	209.4	178.7
CA	N	C4A	H4A1	329.4	56.7
CA	N	C4A	H4A2	89.8	301.1
O	C	CA	N	132.5	294.3
N	CA	C	OXT	310.9	115.0
C	CA	N	CB	117.8	127.1
C	CA	N	HA	237.7	245.2
CB	CA	N	HA	119.8	118.1
N	CA	CB	SG	250.3	187.2
N	CA	CB	HB1	130.3	66.9
N	CA	CB	HB2	6.8	308.3
CA	N	C4A	HN	120.0	238.7
C4A	N	CA	C	192.9	300.4
C4A	N	CA	CB	75.1	173.3
C4A	N	CA	HA	315.3	55.2
C5	C4	C4A	N	148.1	270.0
C3	C4	C4A	N	327.9	90.0
C4	C4A	N	H4A1	240.0	122.0
C4	C4A	N	H4A2	119.6	237.6
H4A1	C4A	N	H4A2	239.6	115.6
C4A	N	HN	CA	132.8	237.8
HN	N	CA	C	312.9	180.0
HN	N	CA	CB	195.1	52.9
HN	N	CA	HA	75.3	294.8
HN	N	C4A	C4	89.4	300.0
HN	N	C4A	H4A1	209.4	178.0
HN	N	C4A	H4A2	329.8	62.4
N	CA	C	O	132.5	294.3
CA	C	O	OXT	178.7	180.7
O	C	CA	CB	251.9	61.2
O	C	CA	HA	11.7	180.0
O	C	OXT	HOXT	360.0	359.9
C	CA	N	HN	312.9	180.0
N	CA	C	CB	240.6	233.1
N	CA	C	HA	120.8	114.3
O	C	CA	OXT	181.6	179.3
CA	C	OXT	HOXT	181.5	179.3
CB	CA	C	HA	240.2	241.2
C	CA	CB	SG	133.6	60.3
C	CA	CB	HB1	13.6	300.0
C	CA	CB	HB2	250.1	181.4
O	C	OXT	CA	178.5	180.7
OXT	C	CA	CB	70.3	241.9
OXT	C	CA	HA	190.1	0.7
OP3	P	OP2	OP1	228.2	239.9
OP1	P	OP2	OP4	245.9	240.9
OP2	P	OP1	HOP1	347.1	312.0
OP3	P	OP2	OP4	114.1	120.9
OP2	P	OP3	HOP3	55.8	48.7
OP2	P	OP4	C5M	74.5	180.1
OP3	P	OP1	OP2	132.6	126.5
OP2	P	OP1	OP4	112.8	125.8
OP3	P	OP1	OP4	245.3	252.3
OP1	P	OP3	HOP3	284.0	282.4
OP1	P	OP4	C5M	193.9	305.8
OP1	P	OP3	OP2	228.1	233.7
OP2	P	OP3	OP4	246.8	233.2
OP1	P	OP3	OP4	115.0	106.9
OP3	P	OP1	HOP1	119.7	78.5
OP3	P	OP4	C5M	313.8	53.1
OP1	P	OP4	OP2	119.3	125.7
OP3	P	OP4	OP2	239.3	233.0
OP3	P	OP4	OP1	120.0	107.3
OP4	P	OP1	HOP1	234.4	186.2
OP4	P	OP3	HOP3	169.0	175.5
P	OP4	C5M	C5	189.1	180.0
P	OP4	C5M	H5M1	309.0	58.1
P	OP4	C5M	H5M2	70.0	301.6
HOP3	OP3	P	OP2	55.8	48.7
HOP3	OP3	P	OP1	284.0	282.4
HOP3	OP3	P	OP4	169.0	175.5
HOP1	OP1	P	OP2	347.1	312.0
HOP1	OP1	P	OP4	234.4	186.2
C5	C5M	OP4	H5M1	240.0	121.9
C5	C5M	OP4	H5M2	119.1	238.3
OP4	C5M	C5	C4	93.3	270.0
OP4	C5M	C5	C6	272.1	90.0
H5M1	C5M	OP4	H5M2	239.1	116.4
OP4	C5M	C5	H5M1	120.0	239.9
OP4	C5M	C5	H5M2	240.9	120.1
H5M1	C5M	C5	H5M2	120.9	240.2
C6	C5	C5M	C4	178.8	180.0
C5M	C5	C4	C3	179.7	180.0
C5M	C5	C4	C4A	359.5	0.0
C5M	C5	C6	N1	180.7	180.0
C5M	C5	C6	H6	0.7	0.0
OP4	C5M	H5M1	C5	238.2	120.7
OP4	C5M	H5M1	H5M2	119.1	242.7
C5	C5M	H5M1	H5M2	240.9	122.1
H5M1	C5M	C5	C4	333.3	30.1
H5M1	C5M	C5	C6	152.1	210.1
OP4	C5M	H5M2	C5	121.2	239.4
OP4	C5M	H5M2	H5M1	240.6	117.2
C5	C5M	H5M2	H5M1	119.4	237.8
H5M2	C5M	C5	C4	212.4	149.9
H5M2	C5M	C5	C6	31.1	329.9
N	C4A	C4	C5	148.1	270.0
C4	C5	C5M	H5M1	333.3	30.1
C4	C5	C5M	H5M2	212.4	149.9
C5M	C5	C4	C6	178.7	180.0
C4	C5	C6	N1	359.4	360.0
C4	C5	C6	H6	179.5	180.0
C2	C3	C4	C5	359.5	0.1
O3	C3	C4	C5	179.9	180.0
C3	C4	C5	C4A	180.2	179.9
C5	C4	C4A	H4A1	28.1	30.5
C5	C4	C4A	H4A2	267.7	149.4
C6	C5	C5M	H5M1	152.1	210.1
C6	C5	C5M	H5M2	31.1	329.9
C5M	C5	C6	C4	181.2	180.0
C6	C5	C4	C3	0.9	360.0
C6	C5	C4	C4A	180.7	180.0
N1	C6	C5	H6	180.0	180.0
C5	C6	N1	C2	359.7	0.0
N1	C6	C5	C4	359.4	360.0
C5	C6	N1	H6	180.0	180.0
C6	N1	C2	C3	0.7	360.0
C6	N1	C2	C2A	180.2	180.0
H6	C6	C5	C4	179.5	180.0
C5	C6	H6	N1	180.0	180.0
H6	C6	N1	C2	179.7	180.0
C2	N1	C6	H6	179.7	180.0
C2A	C2	N1	C3	179.5	180.0
N1	C2	C3	C4	359.7	360.0
N1	C2	C3	O3	179.3	180.0
N1	C2	C2A	H2A1	339.8	347.6
N1	C2	C2A	H2A2	99.8	108.2
N1	C2	C2A	H2A3	219.8	227.2
C5	C4	C3	C2	359.5	0.1
N1	C2	C3	C2A	179.5	180.0
C3	C2	C2A	H2A1	159.3	167.6
C3	C2	C2A	H2A2	279.3	288.2
C3	C2	C2A	H2A3	39.3	47.2
O3	C3	C2	C4	179.6	180.0
C2	C3	C4	C4A	179.7	180.0
C2	C3	O3	HO3	344.1	54.4
N1	C2	C2A	C3	180.5	180.0
C2A	C2	C3	C4	180.2	180.0
C2A	C2	C3	O3	359.8	360.0
H2A1	C2A	C2	H2A2	240.0	239.5
H2A1	C2A	C2	H2A3	120.0	120.5
H2A2	C2A	C2	H2A3	239.9	241.0
H2A1	C2A	C2	C3	159.3	167.6
C2	C2A	H2A1	H2A2	120.0	122.1
C2	C2A	H2A1	H2A3	240.0	238.0
H2A2	C2A	H2A1	H2A3	120.1	115.9
H2A2	C2A	C2	C3	279.3	288.2
C2	C2A	H2A2	H2A1	240.0	238.5
C2	C2A	H2A2	H2A3	120.0	121.5
H2A1	C2A	H2A2	H2A3	240.0	243.0
H2A3	C2A	C2	C3	39.3	47.2
C2	C2A	H2A3	H2A1	120.0	121.5
C2	C2A	H2A3	H2A2	240.0	238.5
H2A1	C2A	H2A3	H2A2	120.0	117.0
N	C4A	C4	C3	327.9	90.0
C5	C4	C3	C4A	179.8	180.1
C2	C3	C4	O3	179.5	180.0
C4	C3	O3	HO3	163.7	234.5
C3	C4	C4A	H4A1	207.8	210.5
C3	C4	C4A	H4A2	87.5	329.5
C5	C4	C3	O3	179.9	180.0
C2	C3	O3	C4	180.5	180.0
O3	C3	C4	C4A	0.2	360.0
HO3	O3	C3	C4	163.7	234.5
C4	C4A	N	CA	209.4	178.7
C4	C4A	N	HN	89.4	300.0
N	C4A	C4	H4A1	120.0	239.5
N	C4A	C4	H4A2	240.4	120.5
C5	C4	C4A	C3	180.2	179.9
H4A1	C4A	C4	H4A2	120.4	241.0
H4A1	C4A	N	CA	329.4	56.7
H4A1	C4A	N	HN	209.4	178.0
N	C4A	H4A1	C4	239.2	122.9
N	C4A	H4A1	H4A2	119.6	244.1
C4	C4A	H4A1	H4A2	240.4	121.2
H4A2	C4A	N	CA	89.8	301.1
H4A2	C4A	N	HN	329.8	62.4
N	C4A	H4A2	C4	120.5	237.0
N	C4A	H4A2	H4A1	240.3	116.0
C4	C4A	H4A2	H4A1	119.7	239.0
CB	CA	N	HN	195.1	52.9
N	CA	CB	C	116.6	126.9
N	CA	CB	HA	239.0	244.0
CB	CA	C	OXT	70.3	241.9
C	CA	CB	HA	122.4	117.1
SG	CB	CA	HB1	120.0	120.3
SG	CB	CA	HB2	243.5	238.9
CA	CB	SG	HSG	311.5	7.9
HB1	CB	CA	HB2	123.5	118.6
HA	CA	N	HN	75.3	294.8
N	CA	HA	C	241.3	241.2
N	CA	HA	CB	121.4	120.2
HA	CA	C	OXT	190.1	0.7
C	CA	HA	CB	240.1	239.0
HA	CA	CB	SG	11.2	303.2
HA	CA	CB	HB1	251.2	182.9
HA	CA	CB	HB2	127.7	64.3
SG	CB	CA	HA	11.2	303.2
CA	CB	SG	HB1	240.0	238.2
CA	CB	SG	HB2	116.5	122.7
HB1	CB	SG	HB2	236.5	244.5
HB1	CB	CA	HA	251.2	182.9
CA	CB	HB1	SG	126.2	124.2
CA	CB	HB1	HB2	243.1	239.7
SG	CB	HB1	HB2	116.9	115.5
HB1	CB	SG	HSG	71.5	129.7
HB2	CB	CA	HA	127.7	64.3
CA	CB	HB2	SG	235.8	235.3
CA	CB	HB2	HB1	117.9	120.0
SG	CB	HB2	HB1	242.1	244.7
HB2	CB	SG	HSG	195.0	245.2
HSG	SG	CB	HB1	71.5	129.7
HSG	SG	CB	HB2	195.0	245.2