PDB Chemical Component C6L
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C6L
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5 |
O4 |
1.188 |
1.213 |
| N1 |
C5 |
1.301 |
1.348 |
| C5 |
C6 |
1.537 |
1.507 |
| C7 |
C6 |
1.528 |
1.531 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.089 |
| C8 |
C7 |
1.537 |
1.530 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| C8 |
C9 |
1.523 |
1.531 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.089 |
| C9 |
C10 |
1.526 |
1.531 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.100 |
1.090 |
| C10 |
H10 |
1.100 |
1.090 |
| C10 |
H10A |
1.100 |
1.090 |
| C10 |
H10B |
1.100 |
1.090 |
| C3 |
N1 |
1.460 |
1.465 |
| N1 |
HN1 |
1.000 |
0.970 |
| C2 |
C3 |
1.528 |
1.529 |
| C4 |
C3 |
1.539 |
1.507 |
| C3 |
H3 |
1.100 |
1.091 |
| O2 |
C4 |
1.209 |
1.208 |
| C4 |
O1 |
1.225 |
1.342 |
| O1 |
HO1 |
0.950 |
0.967 |
| C1 |
C2 |
1.535 |
1.530 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.100 |
1.090 |
| O3 |
C1 |
1.432 |
1.429 |
| C1 |
H1 |
1.101 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| O3 |
HO3 |
0.950 |
0.966 |
Bond Angles for C6L
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C6 |
H6 |
105.7 |
109.5 |
| C5 |
C6 |
H6A |
102.9 |
109.5 |
| C7 |
C6 |
H6 |
105.7 |
109.4 |
| C7 |
C6 |
H6A |
102.9 |
109.5 |
| H6 |
C6 |
H6A |
119.3 |
109.5 |
| C8 |
C7 |
H7 |
104.2 |
109.4 |
| C8 |
C7 |
H7A |
100.3 |
109.5 |
| H7 |
C7 |
H7A |
123.9 |
109.5 |
| C9 |
C8 |
H8 |
107.7 |
109.4 |
| C9 |
C8 |
H8A |
106.4 |
109.5 |
| C8 |
C9 |
C10 |
105.7 |
109.5 |
| C8 |
C9 |
H9 |
110.7 |
109.5 |
| C8 |
C9 |
H9A |
111.6 |
109.5 |
| H8 |
C8 |
H8A |
113.8 |
109.5 |
| C10 |
C9 |
H9 |
110.8 |
109.5 |
| C10 |
C9 |
H9A |
111.6 |
109.5 |
| C9 |
C10 |
H10 |
109.5 |
109.5 |
| C9 |
C10 |
H10A |
109.4 |
109.4 |
| C9 |
C10 |
H10B |
109.5 |
109.4 |
| H9 |
C9 |
H9A |
106.6 |
109.4 |
| H10 |
C10 |
H10A |
109.5 |
109.5 |
| H10 |
C10 |
H10B |
109.5 |
109.5 |
| H10A |
C10 |
H10B |
109.5 |
109.5 |
| C3 |
N1 |
HN1 |
117.9 |
120.0 |
| C2 |
C3 |
H3 |
112.0 |
109.5 |
| C4 |
C3 |
H3 |
107.2 |
109.4 |
| O2 |
C4 |
O1 |
117.1 |
120.0 |
| C4 |
O1 |
HO1 |
109.5 |
117.0 |
| C1 |
C2 |
H2 |
107.7 |
109.5 |
| C1 |
C2 |
H2A |
106.4 |
109.4 |
| H2 |
C2 |
H2A |
113.9 |
109.4 |
| O3 |
C1 |
H1 |
108.4 |
109.5 |
| O3 |
C1 |
H1A |
107.7 |
109.5 |
| H1 |
C1 |
H1A |
112.0 |
109.5 |
Torsion Angles for C6L
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C5 |
C6 |
H6 |
125.9 |
300.2 |
| N1 |
C5 |
C6 |
H6A |
251.8 |
60.3 |
| C7 |
C6 |
C5 |
H6 |
240.0 |
240.1 |
| C7 |
C6 |
C5 |
H6A |
114.1 |
120.0 |
| H6 |
C6 |
C5 |
H6A |
234.1 |
239.9 |
| C5 |
C6 |
C7 |
H6 |
120.0 |
120.0 |
| C5 |
C6 |
C7 |
H6A |
245.9 |
240.0 |
| H6 |
C6 |
C7 |
H6A |
125.9 |
120.0 |
| C5 |
C6 |
H6 |
H6A |
115.1 |
120.1 |
| C7 |
C6 |
H6 |
H6A |
244.9 |
240.0 |
| C5 |
C6 |
H6A |
H6 |
243.4 |
239.9 |
| C7 |
C6 |
H6A |
H6 |
116.6 |
119.9 |
| C8 |
C7 |
C6 |
H6 |
165.0 |
60.0 |
| C8 |
C7 |
C6 |
H6A |
39.1 |
300.0 |
| H7 |
C7 |
C8 |
H7A |
129.1 |
120.0 |
| H7 |
C7 |
C6 |
H6 |
285.0 |
180.0 |
| H7 |
C7 |
C6 |
H6A |
159.1 |
59.9 |
| C8 |
C7 |
H7 |
H7A |
247.0 |
239.9 |
| H7A |
C7 |
C6 |
H6 |
54.0 |
300.0 |
| H7A |
C7 |
C6 |
H6A |
288.2 |
180.0 |
| C8 |
C7 |
H7A |
H7 |
114.9 |
120.0 |
| C9 |
C8 |
C7 |
H7 |
108.3 |
60.1 |
| C9 |
C8 |
C7 |
H7A |
339.3 |
300.0 |
| H8 |
C8 |
C9 |
H8A |
122.4 |
120.0 |
| C10 |
C9 |
C8 |
H9 |
240.0 |
240.0 |
| C10 |
C9 |
C8 |
H9A |
121.5 |
120.0 |
| C8 |
C9 |
C10 |
H10 |
38.2 |
300.0 |
| C8 |
C9 |
C10 |
H10A |
158.2 |
60.0 |
| C8 |
C9 |
C10 |
H10B |
278.2 |
180.0 |
| H9 |
C9 |
C8 |
H9A |
241.5 |
240.0 |
| H8 |
C8 |
C7 |
H7 |
228.3 |
180.0 |
| H8 |
C8 |
C7 |
H7A |
99.2 |
59.9 |
| C9 |
C8 |
H8 |
H8A |
242.3 |
240.0 |
| H8 |
C8 |
C9 |
C10 |
329.7 |
60.0 |
| H8 |
C8 |
C9 |
H9 |
89.7 |
180.0 |
| H8 |
C8 |
C9 |
H9A |
208.3 |
300.0 |
| H8A |
C8 |
C7 |
H7 |
350.8 |
300.1 |
| H8A |
C8 |
C7 |
H7A |
221.7 |
180.0 |
| C9 |
C8 |
H8A |
H8 |
118.5 |
119.9 |
| H8A |
C8 |
C9 |
C10 |
207.3 |
300.0 |
| H8A |
C8 |
C9 |
H9 |
327.3 |
60.0 |
| H8A |
C8 |
C9 |
H9A |
85.8 |
180.0 |
| C10 |
C9 |
C8 |
H8 |
329.7 |
60.0 |
| C10 |
C9 |
C8 |
H8A |
207.3 |
300.0 |
| C8 |
C9 |
C10 |
H9 |
120.0 |
120.0 |
| C8 |
C9 |
C10 |
H9A |
238.5 |
240.0 |
| H9 |
C9 |
C10 |
H9A |
118.6 |
120.0 |
| H10 |
C10 |
C9 |
H10A |
240.0 |
240.0 |
| H10 |
C10 |
C9 |
H10B |
120.0 |
120.0 |
| H10A |
C10 |
C9 |
H10B |
240.0 |
240.0 |
| H9 |
C9 |
C8 |
H8 |
89.7 |
180.0 |
| H9 |
C9 |
C8 |
H8A |
327.3 |
60.0 |
| C8 |
C9 |
H9 |
C10 |
243.1 |
240.0 |
| C8 |
C9 |
H9 |
H9A |
121.5 |
120.0 |
| C10 |
C9 |
H9 |
H9A |
238.4 |
240.0 |
| H9 |
C9 |
C10 |
H10 |
278.3 |
180.0 |
| H9 |
C9 |
C10 |
H10A |
38.3 |
300.0 |
| H9 |
C9 |
C10 |
H10B |
158.3 |
60.0 |
| H9A |
C9 |
C8 |
H8 |
208.3 |
300.0 |
| H9A |
C9 |
C8 |
H8A |
85.8 |
180.0 |
| C8 |
C9 |
H9A |
C10 |
118.0 |
120.0 |
| C8 |
C9 |
H9A |
H9 |
239.0 |
240.0 |
| C10 |
C9 |
H9A |
H9 |
121.0 |
120.0 |
| H9A |
C9 |
C10 |
H10 |
159.7 |
60.0 |
| H9A |
C9 |
C10 |
H10A |
279.7 |
180.0 |
| H9A |
C9 |
C10 |
H10B |
39.7 |
300.0 |
| H10 |
C10 |
C9 |
H9 |
278.3 |
180.0 |
| H10 |
C10 |
C9 |
H9A |
159.7 |
60.0 |
| C9 |
C10 |
H10 |
H10A |
120.0 |
120.0 |
| C9 |
C10 |
H10 |
H10B |
240.0 |
240.0 |
| H10A |
C10 |
H10 |
H10B |
120.0 |
120.0 |
| H10A |
C10 |
C9 |
H9 |
38.3 |
300.0 |
| H10A |
C10 |
C9 |
H9A |
279.7 |
180.0 |
| C9 |
C10 |
H10A |
H10 |
240.0 |
240.0 |
| C9 |
C10 |
H10A |
H10B |
120.0 |
119.9 |
| H10 |
C10 |
H10A |
H10B |
240.0 |
239.9 |
| H10B |
C10 |
C9 |
H9 |
158.3 |
60.0 |
| H10B |
C10 |
C9 |
H9A |
39.7 |
300.0 |
| C9 |
C10 |
H10B |
H10 |
120.0 |
120.0 |
| C9 |
C10 |
H10B |
H10A |
240.0 |
240.1 |
| H10 |
C10 |
H10B |
H10A |
120.0 |
120.1 |
| C2 |
C3 |
N1 |
HN1 |
316.1 |
335.0 |
| C4 |
C3 |
C2 |
H3 |
118.2 |
120.0 |
| C4 |
C3 |
N1 |
HN1 |
76.9 |
95.1 |
| C2 |
C3 |
C4 |
H3 |
238.8 |
240.0 |
| H3 |
C3 |
N1 |
HN1 |
194.9 |
215.0 |
| O2 |
C4 |
C3 |
H3 |
92.0 |
240.1 |
| O2 |
C4 |
O1 |
HO1 |
360.0 |
0.0 |
| O1 |
C4 |
C3 |
H3 |
276.0 |
60.0 |
| C1 |
C2 |
C3 |
H3 |
324.8 |
55.0 |
| H2 |
C2 |
C1 |
H2A |
122.5 |
119.9 |
| H2 |
C2 |
C3 |
H3 |
84.8 |
175.0 |
| C1 |
C2 |
H2 |
H2A |
242.2 |
240.1 |
| H2A |
C2 |
C3 |
H3 |
207.2 |
295.0 |
| C1 |
C2 |
H2A |
H2 |
118.5 |
120.0 |
| O3 |
C1 |
C2 |
H2 |
165.8 |
60.0 |
| O3 |
C1 |
C2 |
H2A |
43.4 |
300.0 |
| H1 |
C1 |
O3 |
H1A |
121.4 |
120.0 |
| H1 |
C1 |
C2 |
H2 |
285.8 |
179.9 |
| H1 |
C1 |
C2 |
H2A |
163.3 |
60.0 |
| O3 |
C1 |
H1 |
H1A |
241.3 |
240.0 |
| H1A |
C1 |
C2 |
H2 |
47.2 |
300.0 |
| H1A |
C1 |
C2 |
H2A |
284.8 |
180.0 |
| O3 |
C1 |
H1A |
H1 |
119.1 |
120.0 |
| HO3 |
O3 |
C1 |
H1 |
131.0 |
60.0 |
| HO3 |
O3 |
C1 |
H1A |
9.6 |
300.0 |