PDB Chemical Component C6G

Ideal Model

Chemical Description

Name 6-(carboxymethoxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine
Formula C12 H16 N5 O9 P
Formal charge 0
Molecular weight 405.257 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 43
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HOP3
Bond count 45
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 6-(carboxymethoxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine
Systematic name (OpenEye OEToolkits) 2-[2-azanyl-9-[(2R,4S,5R)-4-oxidanyl-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]oxyethanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1nc(OCC(O)=O)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2n1
SMILES (CACTVS) Nc1nc(OCC(O)=O)c2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2n1
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)nc(nc2OCC(=O)O)N
InChI descriptor InChI=1S/C12H16N5O9P/c13-12-15-10-9(11(16-12)24-3-8(19)20)14-4-17(10)7-1-5(18)6(26-7)2-25-27(21,22)23/h4-7,18H,1-3H2,(H,19,20)(H2,13,15,16)(H2,21,22,23)/t5-,6+,7+/m0/s1
InChIKey descriptor HZVGFAJHLDXTMX-RRKCRQDMSA-N

Status Information

Last modified 2012-06-15
Created 2012-04-28
Release status REL
Model PDB code 4ENN
Processing site RCSB