PDB Chemical Component C6G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C6G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP1 P 1.562 1.480
P OP2 1.555 1.610
P O5' 1.573 1.610
O C 1.276 1.208
C O7 1.235 1.343
C CH3 1.512 1.506
O5' C5' 1.393 1.429
C5' C4' 1.413 1.530
N7 C8 1.345 1.301
N7 C5 1.354 1.356
C8 N9 1.341 1.365
O6 CH3 1.386 1.428
O6 C6 1.375 1.355
C2' C3' 1.462 1.548
C2' C1' 1.473 1.540
C5 C6 1.398 1.404
C5 C4 1.392 1.406
C6 N1 1.333 1.325
N9 C4 1.335 1.373
N9 C1' 1.429 1.464
C3' C4' 1.471 1.550
C3' O3' 1.366 1.430
C4 N3 1.329 1.327
C4' O4' 1.441 1.443
N1 C2 1.330 1.328
C1' O4' 1.401 1.437
N3 C2 1.333 1.324
C2 N2 1.418 1.384
OP2 HOP2 0.950 0.967
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.091
C4' H4' 1.100 1.090
C1' H1' 1.100 1.091
C8 H8 1.080 1.080
N2 H21 1.000 0.970
N2 H22 1.000 0.970
C2' H2' 1.100 1.090
C2' H2'' 1.100 1.090
C3' H3' 1.100 1.089
O3' HO3' 0.950 0.967
O7 HO7 0.950 0.967
CH3 H31 1.100 1.090
CH3 H32 1.100 1.091
P OP3   1.610
OP3 HOP3   0.967

Bond Angles for C6G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 113.0 109.5
OP1 P O5' 107.2 109.5
OP1 P OP3   109.5
OP2 P O5' 115.4 109.5
P OP2 HOP2 109.5 114.0
OP2 P OP3   109.5
P O5' C5' 108.4 123.0
O5' P OP3   109.4
O C O7 116.1 120.0
O C CH3 119.2 120.0
O7 C CH3 122.5 120.0
C O7 HO7 109.5 117.0
O6 CH3 C 114.6 109.5
C CH3 H31 108.2 109.5
C CH3 H32 108.2 109.5
O5' C5' C4' 122.8 109.5
O5' C5' H5' 106.0 109.5
O5' C5' H5'' 106.0 109.5
C5' C4' O4' 104.1 110.6
C4' C5' H5' 106.1 109.5
C4' C5' H5'' 106.0 109.4
C5' C4' H4' 113.5 110.6
N7 C8 H8 125.8 125.0
N7 C5 C6 134.0 134.6
N7 C5 C4 106.9 107.1
C8 N9 C4 109.1 107.4
O6 CH3 H31 108.2 109.5
O6 CH3 H32 108.2 109.5
C2' C3' O3' 107.9 110.9
C3' C2' H2' 111.5 110.5
C3' C2' H2'' 111.5 110.4
C2' C3' H3' 111.1 111.0
C2' C1' H1' 106.9 109.9
C4 C5 C6 119.2 118.3
C5 C6 N1 119.5 118.6
N9 C4 C5 107.2 106.0
C5 C4 N3 118.9 119.2
N9 C4 N3 133.9 134.8
N9 C1' H1' 107.4 109.9
C3' C4' H4' 112.5 110.8
O3' C3' H3' 112.7 110.8
C3' O3' HO3' 109.5 114.0
C4 N3 C2 119.7 120.6
O4' C4' H4' 113.0 110.6
N3 C2 N2 119.3 118.9
C2 N2 H21 109.5 120.0
C2 N2 H22 109.5 120.0
H5' C5' H5'' 109.5 109.4
H21 N2 H22 109.5 120.0
H2' C2' H2'' 109.5 110.5
H31 CH3 H32 109.5 109.5
P OP3 HOP3   114.0

Torsion Angles for C6G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 231.7 240.0
OP1 P OP2 HOP2 0.0 180.0
OP2 P OP1 OP3   120.0
OP1 P O5' C5' 340.8 304.9
O5' P OP1 OP3   240.0
OP1 P OP3 HOP3   60.1
OP1 P OP2 O5' 123.9 120.0
OP1 P OP2 OP3   240.0
OP2 P O5' C5' 107.7 64.9
O5' P OP2 OP3   120.0
OP2 P OP3 HOP3   300.1
OP1 P O5' OP2 233.1 240.0
OP1 P O5' OP3   120.0
O5' P OP2 HOP2 236.1 60.0
OP2 P O5' OP3   240.0
P O5' C5' C4' 197.9 180.0
P O5' C5' H5' 319.8 300.1
P O5' C5' H5'' 76.1 60.0
O5' P OP3 HOP3   180.0
O7 C O CH3 196.4 180.0
O C O7 HO7 0.0 360.0
O6 CH3 C O 106.8 0.0
O C CH3 H31 227.5 240.0
O C CH3 H32 346.0 120.0
O C O7 CH3 163.1 180.0
O6 CH3 C O7 269.3 180.0
O7 C CH3 H31 30.1 60.0
O7 C CH3 H32 148.6 300.0
O C CH3 O7 197.4 180.0
CH3 C O7 HO7 196.9 180.0
O6 CH3 C H31 239.2 120.0
O6 CH3 C H32 120.7 240.0
H31 CH3 C H32 241.5 120.0
C5' O5' P OP3   185.0
O5' C5' C4' O4' 123.1 66.5
C4' C5' O5' H5' 238.1 239.9
C4' C5' O5' H5'' 121.8 120.0
O5' C5' C4' H4' 359.8 303.7
H5' C5' O5' H5'' 243.7 240.0
O5' C5' C4' H5' 121.8 120.1
O5' C5' C4' H5'' 238.2 240.0
C3' C4' C5' H4' 233.7 236.9
O4' C4' C5' H4' 123.3 122.8
H5' C5' C4' H5'' 116.3 119.9
N7 C8 N9 C4 358.3 359.9
C5 N7 C8 H8 181.1 180.0
C4 C5 N7 C6 180.3 180.0
N7 C5 C6 N1 180.2 180.1
N9 C4 C5 N7 359.0 360.0
N7 C5 C4 N3 180.0 180.2
C8 N9 C4 C5 1.7 0.1
C8 N9 C4 N3 180.4 179.8
C8 N9 C1' H1' 143.7 144.8
O C CH3 O6 106.8 0.0
O7 C CH3 O6 269.3 180.0
C CH3 O6 H31 120.8 240.0
C CH3 O6 H32 239.3 120.0
H31 CH3 O6 H32 118.5 240.0
C3' C2' C1' H1' 267.2 242.6
C2' C3' C4' H4' 155.6 81.5
O3' C3' C2' H3' 236.0 236.3
C2' C3' O3' HO3' 180.0 61.5
H2' C2' C3' H2'' 237.3 122.6
N9 C1' C2' H1' 238.6 238.9
N7 C5 C6 C4 180.3 180.0
N9 C4 C5 C6 179.2 180.0
C6 C5 C4 N3 0.2 0.2
N7 C5 C4 C6 179.8 180.0
C4 C5 C6 N1 359.9 0.1
N9 C4 C5 N3 179.0 179.8
C5 C4 N3 C2 359.7 359.7
N7 C5 C4 N9 359.0 360.0
C5 C4 N9 N3 181.3 180.3
C4 N9 C1' H1' 334.2 324.6
N9 C4 N3 C2 181.1 180.0
C2' C1' N9 H1' 121.1 121.1
C3' C4' C5' H5' 111.7 60.4
C3' C4' C5' H5'' 355.4 300.5
C5' C4' C3' H4' 126.9 123.0
O4' C4' C3' H4' 237.4 241.4
O3' C3' C2' H2' 200.3 20.3
O3' C3' C2' H2'' 323.0 257.7
C2' C3' O3' H3' 123.0 123.7
O3' C3' C4' H4' 40.2 323.4
N3 C4 C5 C6 0.2 0.2
N9 C4 N3 C5 181.4 180.3
C4 N3 C2 N2 181.2 180.0
O4' C4' C5' H5' 1.3 306.4
O4' C4' C5' H5'' 244.9 186.5
C5' C4' O4' H4' 236.4 237.2
C3' C4' O4' H4' 122.3 118.7
C5 C6 N1 C2 0.0 359.6
N1 C2 N2 H21 360.0 180.0
N1 C2 N2 H22 120.0 359.9
C1' O4' C4' H4' 219.8 281.4
N3 C2 N2 H21 179.0 0.1
N3 C2 N2 H22 299.1 180.0
H21 N2 C2 H22 240.0 180.1
HOP2 OP2 P O5' 236.1 60.0
HOP2 OP2 P OP3   300.0
O5' C5' H5' C4' 228.0 239.9
O5' C5' H5' H5'' 114.0 120.0
H5' C5' C4' O4' 1.3 306.4
C4' C5' H5' H5'' 246.0 240.1
H5' C5' C4' H4' 238.0 183.6
O5' C5' H5'' C4' 132.0 120.0
O5' C5' H5'' H5' 246.0 239.9
H5'' C5' C4' O4' 244.9 186.5
C4' C5' H5'' H5' 114.0 119.9
H5'' C5' C4' H4' 121.6 63.7
C5' C4' H4' O4' 118.2 122.8
H4' C4' C5' H5' 238.0 183.6
H4' C4' C5' H5'' 121.6 63.7
H8 C8 N9 C4 178.2 180.0
C2 N2 H21 H22 120.0 179.9
C2 N2 H22 H21 240.0 180.1
H2' C2' C3' O3' 200.3 20.3
C3' C2' H2' H2'' 123.8 237.5
H2' C2' C3' H3' 324.3 144.0
H2' C2' C1' H1' 148.6 1.3
H2'' C2' C3' O3' 323.0 257.7
C3' C2' H2'' H2' 236.2 122.5
H2'' C2' C3' H3' 87.0 21.4
H2'' C2' C1' H1' 25.9 124.0
C2' C3' H3' O3' 238.8 236.3
H3' C3' C2' H2' 324.3 144.0
H3' C3' C2' H2'' 87.0 21.4
H3' C3' C4' H4' 275.9 199.8
H3' C3' O3' HO3' 57.0 297.8
HO3' O3' C3' H3' 57.0 297.8
HO7 O7 C CH3 196.9 180.0
O6 CH3 H31 C 124.7 240.0
C CH3 H31 H32 117.7 240.0
O6 CH3 H31 H32 242.4 120.0
O6 CH3 H32 C 235.3 120.0
C CH3 H32 H31 242.3 120.0
O6 CH3 H32 H31 117.6 240.0
OP1 P OP3 OP2   120.0
OP1 P OP3 O5'   240.0
OP2 P OP3 O5'   120.0
OP3 P OP2 HOP2   300.0
OP3 P O5' C5'   185.0