PDB Chemical Component C6G
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C6G
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OP1 |
P |
1.562 |
1.480 |
P |
OP2 |
1.555 |
1.610 |
P |
O5' |
1.573 |
1.610 |
O |
C |
1.276 |
1.208 |
C |
O7 |
1.235 |
1.343 |
C |
CH3 |
1.512 |
1.506 |
O5' |
C5' |
1.393 |
1.429 |
C5' |
C4' |
1.413 |
1.530 |
N7 |
C8 |
1.345 |
1.301 |
N7 |
C5 |
1.354 |
1.356 |
C8 |
N9 |
1.341 |
1.365 |
O6 |
CH3 |
1.386 |
1.428 |
O6 |
C6 |
1.375 |
1.355 |
C2' |
C3' |
1.462 |
1.548 |
C2' |
C1' |
1.473 |
1.540 |
C5 |
C6 |
1.398 |
1.404 |
C5 |
C4 |
1.392 |
1.406 |
C6 |
N1 |
1.333 |
1.325 |
N9 |
C4 |
1.335 |
1.373 |
N9 |
C1' |
1.429 |
1.464 |
C3' |
C4' |
1.471 |
1.550 |
C3' |
O3' |
1.366 |
1.430 |
C4 |
N3 |
1.329 |
1.327 |
C4' |
O4' |
1.441 |
1.443 |
N1 |
C2 |
1.330 |
1.328 |
C1' |
O4' |
1.401 |
1.437 |
N3 |
C2 |
1.333 |
1.324 |
C2 |
N2 |
1.418 |
1.384 |
OP2 |
HOP2 |
0.950 |
0.967 |
C5' |
H5' |
1.100 |
1.090 |
C5' |
H5'' |
1.100 |
1.091 |
C4' |
H4' |
1.100 |
1.090 |
C1' |
H1' |
1.100 |
1.091 |
C8 |
H8 |
1.080 |
1.080 |
N2 |
H21 |
1.000 |
0.970 |
N2 |
H22 |
1.000 |
0.970 |
C2' |
H2' |
1.100 |
1.090 |
C2' |
H2'' |
1.100 |
1.090 |
C3' |
H3' |
1.100 |
1.089 |
O3' |
HO3' |
0.950 |
0.967 |
O7 |
HO7 |
0.950 |
0.967 |
CH3 |
H31 |
1.100 |
1.090 |
CH3 |
H32 |
1.100 |
1.091 |
P |
OP3 |
|
1.610 |
OP3 |
HOP3 |
|
0.967 |
Bond Angles for C6G
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP2 |
113.0 |
109.5 |
OP1 |
P |
O5' |
107.2 |
109.5 |
OP1 |
P |
OP3 |
|
109.5 |
OP2 |
P |
O5' |
115.4 |
109.5 |
P |
OP2 |
HOP2 |
109.5 |
114.0 |
OP2 |
P |
OP3 |
|
109.5 |
P |
O5' |
C5' |
108.4 |
123.0 |
O5' |
P |
OP3 |
|
109.4 |
O |
C |
O7 |
116.1 |
120.0 |
O |
C |
CH3 |
119.2 |
120.0 |
O7 |
C |
CH3 |
122.5 |
120.0 |
C |
O7 |
HO7 |
109.5 |
117.0 |
O6 |
CH3 |
C |
114.6 |
109.5 |
C |
CH3 |
H31 |
108.2 |
109.5 |
C |
CH3 |
H32 |
108.2 |
109.5 |
O5' |
C5' |
C4' |
122.8 |
109.5 |
O5' |
C5' |
H5' |
106.0 |
109.5 |
O5' |
C5' |
H5'' |
106.0 |
109.5 |
C5' |
C4' |
O4' |
104.1 |
110.6 |
C4' |
C5' |
H5' |
106.1 |
109.5 |
C4' |
C5' |
H5'' |
106.0 |
109.4 |
C5' |
C4' |
H4' |
113.5 |
110.6 |
N7 |
C8 |
H8 |
125.8 |
125.0 |
N7 |
C5 |
C6 |
134.0 |
134.6 |
N7 |
C5 |
C4 |
106.9 |
107.1 |
C8 |
N9 |
C4 |
109.1 |
107.4 |
O6 |
CH3 |
H31 |
108.2 |
109.5 |
O6 |
CH3 |
H32 |
108.2 |
109.5 |
C2' |
C3' |
O3' |
107.9 |
110.9 |
C3' |
C2' |
H2' |
111.5 |
110.5 |
C3' |
C2' |
H2'' |
111.5 |
110.4 |
C2' |
C3' |
H3' |
111.1 |
111.0 |
C2' |
C1' |
H1' |
106.9 |
109.9 |
C4 |
C5 |
C6 |
119.2 |
118.3 |
C5 |
C6 |
N1 |
119.5 |
118.6 |
N9 |
C4 |
C5 |
107.2 |
106.0 |
C5 |
C4 |
N3 |
118.9 |
119.2 |
N9 |
C4 |
N3 |
133.9 |
134.8 |
N9 |
C1' |
H1' |
107.4 |
109.9 |
C3' |
C4' |
H4' |
112.5 |
110.8 |
O3' |
C3' |
H3' |
112.7 |
110.8 |
C3' |
O3' |
HO3' |
109.5 |
114.0 |
C4 |
N3 |
C2 |
119.7 |
120.6 |
O4' |
C4' |
H4' |
113.0 |
110.6 |
N3 |
C2 |
N2 |
119.3 |
118.9 |
C2 |
N2 |
H21 |
109.5 |
120.0 |
C2 |
N2 |
H22 |
109.5 |
120.0 |
H5' |
C5' |
H5'' |
109.5 |
109.4 |
H21 |
N2 |
H22 |
109.5 |
120.0 |
H2' |
C2' |
H2'' |
109.5 |
110.5 |
H31 |
CH3 |
H32 |
109.5 |
109.5 |
P |
OP3 |
HOP3 |
|
114.0 |
Torsion Angles for C6G
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP2 |
P |
OP1 |
O5' |
231.7 |
240.0 |
OP1 |
P |
OP2 |
HOP2 |
0.0 |
180.0 |
OP2 |
P |
OP1 |
OP3 |
|
120.0 |
OP1 |
P |
O5' |
C5' |
340.8 |
304.9 |
O5' |
P |
OP1 |
OP3 |
|
240.0 |
OP1 |
P |
OP3 |
HOP3 |
|
60.1 |
OP1 |
P |
OP2 |
O5' |
123.9 |
120.0 |
OP1 |
P |
OP2 |
OP3 |
|
240.0 |
OP2 |
P |
O5' |
C5' |
107.7 |
64.9 |
O5' |
P |
OP2 |
OP3 |
|
120.0 |
OP2 |
P |
OP3 |
HOP3 |
|
300.1 |
OP1 |
P |
O5' |
OP2 |
233.1 |
240.0 |
OP1 |
P |
O5' |
OP3 |
|
120.0 |
O5' |
P |
OP2 |
HOP2 |
236.1 |
60.0 |
OP2 |
P |
O5' |
OP3 |
|
240.0 |
P |
O5' |
C5' |
C4' |
197.9 |
180.0 |
P |
O5' |
C5' |
H5' |
319.8 |
300.1 |
P |
O5' |
C5' |
H5'' |
76.1 |
60.0 |
O5' |
P |
OP3 |
HOP3 |
|
180.0 |
O7 |
C |
O |
CH3 |
196.4 |
180.0 |
O |
C |
O7 |
HO7 |
0.0 |
360.0 |
O6 |
CH3 |
C |
O |
106.8 |
0.0 |
O |
C |
CH3 |
H31 |
227.5 |
240.0 |
O |
C |
CH3 |
H32 |
346.0 |
120.0 |
O |
C |
O7 |
CH3 |
163.1 |
180.0 |
O6 |
CH3 |
C |
O7 |
269.3 |
180.0 |
O7 |
C |
CH3 |
H31 |
30.1 |
60.0 |
O7 |
C |
CH3 |
H32 |
148.6 |
300.0 |
O |
C |
CH3 |
O7 |
197.4 |
180.0 |
CH3 |
C |
O7 |
HO7 |
196.9 |
180.0 |
O6 |
CH3 |
C |
H31 |
239.2 |
120.0 |
O6 |
CH3 |
C |
H32 |
120.7 |
240.0 |
H31 |
CH3 |
C |
H32 |
241.5 |
120.0 |
C5' |
O5' |
P |
OP3 |
|
185.0 |
O5' |
C5' |
C4' |
O4' |
123.1 |
66.5 |
C4' |
C5' |
O5' |
H5' |
238.1 |
239.9 |
C4' |
C5' |
O5' |
H5'' |
121.8 |
120.0 |
O5' |
C5' |
C4' |
H4' |
359.8 |
303.7 |
H5' |
C5' |
O5' |
H5'' |
243.7 |
240.0 |
O5' |
C5' |
C4' |
H5' |
121.8 |
120.1 |
O5' |
C5' |
C4' |
H5'' |
238.2 |
240.0 |
C3' |
C4' |
C5' |
H4' |
233.7 |
236.9 |
O4' |
C4' |
C5' |
H4' |
123.3 |
122.8 |
H5' |
C5' |
C4' |
H5'' |
116.3 |
119.9 |
N7 |
C8 |
N9 |
C4 |
358.3 |
359.9 |
C5 |
N7 |
C8 |
H8 |
181.1 |
180.0 |
C4 |
C5 |
N7 |
C6 |
180.3 |
180.0 |
N7 |
C5 |
C6 |
N1 |
180.2 |
180.1 |
N9 |
C4 |
C5 |
N7 |
359.0 |
360.0 |
N7 |
C5 |
C4 |
N3 |
180.0 |
180.2 |
C8 |
N9 |
C4 |
C5 |
1.7 |
0.1 |
C8 |
N9 |
C4 |
N3 |
180.4 |
179.8 |
C8 |
N9 |
C1' |
H1' |
143.7 |
144.8 |
O |
C |
CH3 |
O6 |
106.8 |
0.0 |
O7 |
C |
CH3 |
O6 |
269.3 |
180.0 |
C |
CH3 |
O6 |
H31 |
120.8 |
240.0 |
C |
CH3 |
O6 |
H32 |
239.3 |
120.0 |
H31 |
CH3 |
O6 |
H32 |
118.5 |
240.0 |
C3' |
C2' |
C1' |
H1' |
267.2 |
242.6 |
C2' |
C3' |
C4' |
H4' |
155.6 |
81.5 |
O3' |
C3' |
C2' |
H3' |
236.0 |
236.3 |
C2' |
C3' |
O3' |
HO3' |
180.0 |
61.5 |
H2' |
C2' |
C3' |
H2'' |
237.3 |
122.6 |
N9 |
C1' |
C2' |
H1' |
238.6 |
238.9 |
N7 |
C5 |
C6 |
C4 |
180.3 |
180.0 |
N9 |
C4 |
C5 |
C6 |
179.2 |
180.0 |
C6 |
C5 |
C4 |
N3 |
0.2 |
0.2 |
N7 |
C5 |
C4 |
C6 |
179.8 |
180.0 |
C4 |
C5 |
C6 |
N1 |
359.9 |
0.1 |
N9 |
C4 |
C5 |
N3 |
179.0 |
179.8 |
C5 |
C4 |
N3 |
C2 |
359.7 |
359.7 |
N7 |
C5 |
C4 |
N9 |
359.0 |
360.0 |
C5 |
C4 |
N9 |
N3 |
181.3 |
180.3 |
C4 |
N9 |
C1' |
H1' |
334.2 |
324.6 |
N9 |
C4 |
N3 |
C2 |
181.1 |
180.0 |
C2' |
C1' |
N9 |
H1' |
121.1 |
121.1 |
C3' |
C4' |
C5' |
H5' |
111.7 |
60.4 |
C3' |
C4' |
C5' |
H5'' |
355.4 |
300.5 |
C5' |
C4' |
C3' |
H4' |
126.9 |
123.0 |
O4' |
C4' |
C3' |
H4' |
237.4 |
241.4 |
O3' |
C3' |
C2' |
H2' |
200.3 |
20.3 |
O3' |
C3' |
C2' |
H2'' |
323.0 |
257.7 |
C2' |
C3' |
O3' |
H3' |
123.0 |
123.7 |
O3' |
C3' |
C4' |
H4' |
40.2 |
323.4 |
N3 |
C4 |
C5 |
C6 |
0.2 |
0.2 |
N9 |
C4 |
N3 |
C5 |
181.4 |
180.3 |
C4 |
N3 |
C2 |
N2 |
181.2 |
180.0 |
O4' |
C4' |
C5' |
H5' |
1.3 |
306.4 |
O4' |
C4' |
C5' |
H5'' |
244.9 |
186.5 |
C5' |
C4' |
O4' |
H4' |
236.4 |
237.2 |
C3' |
C4' |
O4' |
H4' |
122.3 |
118.7 |
C5 |
C6 |
N1 |
C2 |
0.0 |
359.6 |
N1 |
C2 |
N2 |
H21 |
360.0 |
180.0 |
N1 |
C2 |
N2 |
H22 |
120.0 |
359.9 |
C1' |
O4' |
C4' |
H4' |
219.8 |
281.4 |
N3 |
C2 |
N2 |
H21 |
179.0 |
0.1 |
N3 |
C2 |
N2 |
H22 |
299.1 |
180.0 |
H21 |
N2 |
C2 |
H22 |
240.0 |
180.1 |
HOP2 |
OP2 |
P |
O5' |
236.1 |
60.0 |
HOP2 |
OP2 |
P |
OP3 |
|
300.0 |
O5' |
C5' |
H5' |
C4' |
228.0 |
239.9 |
O5' |
C5' |
H5' |
H5'' |
114.0 |
120.0 |
H5' |
C5' |
C4' |
O4' |
1.3 |
306.4 |
C4' |
C5' |
H5' |
H5'' |
246.0 |
240.1 |
H5' |
C5' |
C4' |
H4' |
238.0 |
183.6 |
O5' |
C5' |
H5'' |
C4' |
132.0 |
120.0 |
O5' |
C5' |
H5'' |
H5' |
246.0 |
239.9 |
H5'' |
C5' |
C4' |
O4' |
244.9 |
186.5 |
C4' |
C5' |
H5'' |
H5' |
114.0 |
119.9 |
H5'' |
C5' |
C4' |
H4' |
121.6 |
63.7 |
C5' |
C4' |
H4' |
O4' |
118.2 |
122.8 |
H4' |
C4' |
C5' |
H5' |
238.0 |
183.6 |
H4' |
C4' |
C5' |
H5'' |
121.6 |
63.7 |
H8 |
C8 |
N9 |
C4 |
178.2 |
180.0 |
C2 |
N2 |
H21 |
H22 |
120.0 |
179.9 |
C2 |
N2 |
H22 |
H21 |
240.0 |
180.1 |
H2' |
C2' |
C3' |
O3' |
200.3 |
20.3 |
C3' |
C2' |
H2' |
H2'' |
123.8 |
237.5 |
H2' |
C2' |
C3' |
H3' |
324.3 |
144.0 |
H2' |
C2' |
C1' |
H1' |
148.6 |
1.3 |
H2'' |
C2' |
C3' |
O3' |
323.0 |
257.7 |
C3' |
C2' |
H2'' |
H2' |
236.2 |
122.5 |
H2'' |
C2' |
C3' |
H3' |
87.0 |
21.4 |
H2'' |
C2' |
C1' |
H1' |
25.9 |
124.0 |
C2' |
C3' |
H3' |
O3' |
238.8 |
236.3 |
H3' |
C3' |
C2' |
H2' |
324.3 |
144.0 |
H3' |
C3' |
C2' |
H2'' |
87.0 |
21.4 |
H3' |
C3' |
C4' |
H4' |
275.9 |
199.8 |
H3' |
C3' |
O3' |
HO3' |
57.0 |
297.8 |
HO3' |
O3' |
C3' |
H3' |
57.0 |
297.8 |
HO7 |
O7 |
C |
CH3 |
196.9 |
180.0 |
O6 |
CH3 |
H31 |
C |
124.7 |
240.0 |
C |
CH3 |
H31 |
H32 |
117.7 |
240.0 |
O6 |
CH3 |
H31 |
H32 |
242.4 |
120.0 |
O6 |
CH3 |
H32 |
C |
235.3 |
120.0 |
C |
CH3 |
H32 |
H31 |
242.3 |
120.0 |
O6 |
CH3 |
H32 |
H31 |
117.6 |
240.0 |
OP1 |
P |
OP3 |
OP2 |
|
120.0 |
OP1 |
P |
OP3 |
O5' |
|
240.0 |
OP2 |
P |
OP3 |
O5' |
|
120.0 |
OP3 |
P |
OP2 |
HOP2 |
|
300.0 |
OP3 |
P |
O5' |
C5' |
|
185.0 |