PDB Chemical Component C6D

Ideal Model

Chemical Description

Name N~5~-[N-(3-hydroxypropyl)carbamimidoyl]-L-ornithine
Formula C9 H20 N4 O3
Formal charge 0
Molecular weight 232.280 g/mol
Component type NON-POLYMER
Nonstandard Parent Id ARG

Chemical features

Atom count 36
Chiral atom count 1
Chiral atoms CA
Observed leaving atoms H2 OXT HXT
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) N~5~-[N-(3-hydroxypropyl)carbamimidoyl]-L-ornithine
Systematic name (OpenEye OEToolkits) (2~{S})-2-azanyl-5-[[~{N}-(3-oxidanylpropyl)carbamimidoyl]amino]pentanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) N[C@@H](CCCNC(=N)NCCCO)C(O)=O
SMILES (CACTVS) N[CH](CCCNC(=N)NCCCO)C(O)=O
Stereo SMILES (OpenEye) [H]/N=C(\NCCC[C@@H](C(=O)O)N)/NCCCO
InChI descriptor InChI=1S/C9H20N4O3/c10-7(8(15)16)3-1-4-12-9(11)13-5-2-6-14/h7,14H,1-6,10H2,(H,15,16)(H3,11,12,13)/t7-/m0/s1
InChIKey descriptor YCHONDWDFOKMRR-ZETCQYMHSA-N

Status Information

Last modified 2023-11-03
Created 2017-09-13
Release status REL
Model PDB code 6AZK
Processing site RCSB