Atom Nomenclature for C69

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for C69

Atom Name (V3) Atom Name (V2)
CAB CAB
OAA OAA
CAD CAD
CAC CAC
CAN CAN
OAM OAM
CAL CAL
CAO CAO
CAP CAP
CAE CAE
NAF NAF
CAQ CAQ
OAW OAW
CAR CAR
SAS SAS
CAG CAG
CAH CAH
CAI CAI
CAJ CAJ
BRA BRA
CAV CAV
CAU CAU
CAT CAT
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16