PDB Chemical Component C66

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C66

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C8' C7' 1.549 1.518
C8' N1 1.471 1.435
C8' H8'1 1.100 1.092
C8' H8'2 1.100 1.093
C7' O7' 1.234 1.234
C7' N4' 1.358 1.408
C5' C' 1.529 1.517
C5' N4' 1.530 1.441
C5' CB 1.560 1.529
C5' H5'1 1.100 1.094
C' O1' 1.244 1.224
C' OXT   1.359
OXT HXT   0.980
N4' C3' 1.481 1.468
C3' C2' 1.497 1.520
C3' H3'1 1.100 1.095
C3' H3'2 1.100 1.094
C2' N1' 1.481 1.439
C2' H2'1 1.100 1.094
C2' H2'2 1.099 1.095
N1' H1'1 1.000 1.007
N1' H1'2 1.001 1.008
N1 C2 1.380 1.419
N1 C6 1.384 1.388
C2 N3 1.357 1.384
C2 O2 1.237 1.232
N3 C4 1.332 1.307
C4 C5 1.418 1.486
C4 N4 1.295 1.375
C5 C6 1.354 1.331
C5 H5 1.080 1.082
C6 H6 1.080 1.084
N4 HN41 1.000 0.992
N4 HN42 1.000 0.991
CB CG 1.533 1.534
CB HB1 1.100 1.098
CB HB2 1.100 1.097
CG CD 1.535 1.533
CG HG1 1.100 1.097
CG HG2 1.100 1.096
CD CE 1.533 1.530
CD HD1 1.100 1.096
CD HD2 1.100 1.097
CE NZ 1.492 1.458
CE HE1 1.100 1.096
CE HE2 1.100 1.095
NZ HZ1 1.001 0.998
NZ HZ2 1.000 0.999

Bond Angles for C66

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C7' C8' N1 107.0 110.0
C7' C8' H8'1 110.9 110.4
C7' C8' H8'2 110.3 110.4
C8' C7' O7' 119.9 120.8
C8' C7' N4' 121.4 116.4
N1 C8' H8'1 110.8 107.6
N1 C8' H8'2 110.3 107.6
C8' N1 C2 118.5 122.1
C8' N1 C6 121.0 118.8
H8'1 C8' H8'2 107.6 110.9
O7' C7' N4' 118.7 122.8
C7' N4' C5' 118.9 122.1
C7' N4' C3' 122.3 122.1
C' C5' N4' 114.1 106.4
C' C5' CB 111.7 110.2
C' C5' H5'1 108.7 109.0
C5' C' O1' 120.3 125.2
C5' C' OXT   111.9
N4' C5' CB 118.7 112.4
N4' C5' H5'1 99.2 106.2
C5' N4' C3' 118.8 115.8
CB C5' H5'1 102.4 112.3
C5' CB CG 117.6 114.6
C5' CB HB1 104.9 109.3
C5' CB HB2 106.8 109.6
O1' C' OXT   122.8
C' OXT HXT   115.3
N4' C3' C2' 119.3 112.0
N4' C3' H3'1 104.0 107.1
N4' C3' H3'2 106.3 107.5
C2' C3' H3'1 104.1 110.3
C2' C3' H3'2 106.3 111.3
C3' C2' N1' 111.3 112.1
C3' C2' H2'1 108.4 111.4
C3' C2' H2'2 108.9 110.1
H3'1 C3' H3'2 117.5 108.5
N1' C2' H2'1 108.5 107.4
N1' C2' H2'2 108.9 107.0
C2' N1' H1'1 109.4 119.2
C2' N1' H1'2 109.5 119.1
H2'1 C2' H2'2 110.9 108.6
H1'1 N1' H1'2 109.5 120.3
C2 N1 C6 120.5 119.2
N1 C2 N3 120.3 118.9
N1 C2 O2 121.0 120.8
N1 C6 C5 121.2 122.8
N1 C6 H6 119.4 115.9
N3 C2 O2 118.7 120.3
C2 N3 C4 117.5 121.1
N3 C4 C5 125.6 121.6
N3 C4 N4 113.4 120.2
C5 C4 N4 121.0 118.2
C4 C5 C6 114.8 116.4
C4 C5 H5 122.6 120.5
C4 N4 HN41 124.7 118.0
C4 N4 HN42 110.6 118.1
C6 C5 H5 122.6 123.1
C5 C6 H6 119.4 121.3
HN41 N4 HN42 124.7 123.9
CG CB HB1 105.0 108.1
CG CB HB2 106.9 108.9
CB CG CD 111.2 113.3
CB CG HG1 108.5 107.9
CB CG HG2 108.9 109.7
HB1 CB HB2 116.1 105.9
CD CG HG1 108.5 108.9
CD CG HG2 108.9 110.2
CG CD CE 110.8 113.0
CG CD HD1 108.7 110.1
CG CD HD2 109.0 109.1
HG1 CG HG2 110.8 106.6
CE CD HD1 108.7 109.2
CE CD HD2 109.0 108.3
CD CE NZ 112.3 111.9
CD CE HE1 107.9 110.0
CD CE HE2 108.5 109.2
HD1 CD HD2 110.5 106.8
NZ CE HE1 107.9 109.2
NZ CE HE2 108.5 109.0
CE NZ HZ1 109.5 118.3
CE NZ HZ2 109.5 118.2
HE1 CE HE2 111.7 107.3
HZ1 NZ HZ2 109.5 122.2

Torsion Angles for C66

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C8' C7' H8'1 121.0 241.4
N1 C8' C7' H8'2 240.0 118.5
C7' C8' N1 C2 92.6 270.0
C7' C8' N1 C6 272.7 90.1
H8'1 C8' C7' H8'2 119.1 237.1
O7' C7' C8' N4' 179.8 179.8
C8' C7' N4' C5' 180.1 179.9
C8' C7' N4' C3' 1.9 359.8
C7' C8' N1 H8'1 239.0 120.2
C7' C8' N1 H8'2 120.0 239.8
N1 C8' C7' O7' 359.7 1.3
N1 C8' C7' N4' 179.9 181.5
H8'1 C8' N1 H8'2 241.0 119.5
C2 N1 C8' C6 179.9 179.9
C8' N1 C2 N3 179.5 180.1
C8' N1 C2 O2 359.6 0.0
C8' N1 C6 C5 180.1 180.0
C8' N1 C6 H6 0.1 359.9
C7' C8' H8'1 N1 118.6 240.0
C7' C8' H8'1 H8'2 239.3 122.6
H8'1 C8' C7' O7' 238.7 119.8
H8'1 C8' C7' N4' 59.0 300.0
N1 C8' H8'1 H8'2 120.7 242.6
H8'1 C8' N1 C2 213.5 149.7
H8'1 C8' N1 C6 33.7 329.8
C7' C8' H8'2 N1 242.0 120.0
C7' C8' H8'2 H8'1 121.0 237.4
H8'2 C8' C7' O7' 119.7 242.8
H8'2 C8' C7' N4' 299.9 62.9
N1 C8' H8'2 H8'1 239.0 117.4
H8'2 C8' N1 C2 332.6 30.2
H8'2 C8' N1 C6 152.7 210.3
O7' C7' C8' N1 359.7 1.3
O7' C7' C8' H8'1 238.7 119.8
O7' C7' C8' H8'2 119.7 242.8
C8' C7' O7' N4' 180.2 180.2
O7' C7' N4' C5' 0.3 0.1
O7' C7' N4' C3' 182.1 180.0
N4' C7' C8' N1 179.9 181.5
N4' C7' C8' H8'1 59.0 300.0
N4' C7' C8' H8'2 299.9 62.9
C8' C7' N4' O7' 179.8 179.8
C' C5' N4' C7' 269.1 296.0
C7' N4' C5' CB 44.1 56.7
C7' N4' C5' H5'1 153.8 180.0
C5' N4' C7' C3' 178.2 180.1
C7' N4' C3' C2' 247.3 90.0
C7' N4' C3' H3'1 132.0 329.1
C7' N4' C3' H3'2 7.3 212.7
C7' N4' C5' C' 269.1 296.0
N4' C5' C' CB 138.1 122.1
N4' C5' C' H5'1 250.3 245.8
C' C5' N4' C3' 87.4 116.1
CB C5' C' H5'1 112.2 123.7
C' C5' CB CG 177.6 178.4
C' C5' CB HB1 61.4 299.9
C' C5' CB HB2 297.6 55.7
O1' C' C5' OXT   177.6
C5' C' OXT HXT   177.7
C7' N4' C5' C3' 181.7 180.0
C' C5' N4' CB 225.1 239.3
C' C5' N4' H5'1 115.3 116.0
N4' C5' C' O1' 178.6 335.8
N4' C5' C' OXT   158.2
CB C5' N4' H5'1 250.3 236.8
N4' C5' CB CG 41.7 59.9
N4' C5' CB HB1 285.5 181.4
N4' C5' CB HB2 161.7 297.1
C5' N4' C3' C2' 69.0 270.0
C5' N4' C3' H3'1 313.7 149.0
C5' N4' C3' H3'2 189.1 32.6
C' C5' CB N4' 135.9 118.5
C' C5' CB H5'1 243.9 238.3
CB C5' C' O1' 40.6 213.7
CB C5' C' OXT   36.0
N4' C5' CB H5'1 108.0 119.7
CB C5' N4' C3' 222.3 236.8
CG CB C5' HB1 116.2 238.5
CG CB C5' HB2 240.0 122.8
C5' CB CG CD 192.2 182.2
C5' CB CG HG1 72.9 61.5
C5' CB CG HG2 312.2 305.8
HB1 CB C5' HB2 123.8 244.3
C' C5' H5'1 N4' 240.6 245.7
C' C5' H5'1 CB 118.3 122.4
H5'1 C5' C' O1' 288.3 90.0
H5'1 C5' C' OXT   272.3
N4' C5' H5'1 CB 237.7 236.7
H5'1 C5' N4' C3' 332.1 0.0
H5'1 C5' CB CG 293.7 300.2
H5'1 C5' CB HB1 177.5 61.7
H5'1 C5' CB HB2 53.7 177.4
O1' C' C5' N4' 178.6 335.8
O1' C' C5' CB 40.6 213.7
O1' C' C5' H5'1 288.3 90.0
C5' C' O1' OXT   182.6
O1' C' OXT HXT   360.0
OXT C' C5' N4'   158.2
OXT C' C5' CB   36.0
OXT C' C5' H5'1   272.3
C5' C' OXT O1'   177.7
C7' N4' C3' C5' 178.2 180.0
C3' N4' C5' CB 222.3 236.8
C3' N4' C5' H5'1 332.1 0.0
C2' C3' N4' H3'1 115.3 121.0
C2' C3' N4' H3'2 240.0 237.4
N4' C3' C2' N1' 71.5 180.9
N4' C3' C2' H2'1 312.3 60.5
N4' C3' C2' H2'2 191.5 300.0
H3'1 C3' N4' H3'2 124.7 116.4
N4' C3' C2' H3'1 244.7 240.9
N4' C3' C2' H3'2 120.0 120.4
H3'1 C3' C2' H3'2 235.3 239.5
N1' C2' C3' H2'1 119.2 120.4
N1' C2' C3' H2'2 240.0 240.9
C3' C2' N1' H1'1 301.1 124.1
C3' C2' N1' H1'2 181.1 317.4
H2'1 C2' C3' H2'2 120.7 120.5
N4' C3' H3'1 C2' 125.6 122.0
N4' C3' H3'1 H3'2 242.8 244.2
C2' C3' H3'1 H3'2 117.2 122.2
H3'1 C3' C2' N1' 186.8 300.0
H3'1 C3' C2' H2'1 67.5 179.6
H3'1 C3' C2' H2'2 306.8 59.1
N4' C3' H3'2 C2' 231.9 237.0
N4' C3' H3'2 H3'1 115.9 115.5
C2' C3' H3'2 H3'1 244.0 238.5
H3'2 C3' C2' N1' 311.5 60.5
H3'2 C3' C2' H2'1 192.3 300.1
H3'2 C3' C2' H2'2 71.5 179.6
N1' C2' C3' H3'1 186.8 300.0
N1' C2' C3' H3'2 311.5 60.5
C3' C2' N1' H2'1 240.8 237.3
C3' C2' N1' H2'2 120.0 120.8
H2'1 C2' N1' H2'2 239.2 243.6
H1'1 N1' C2' H1'2 120.0 166.7
H2'1 C2' C3' H3'1 67.5 179.6
H2'1 C2' C3' H3'2 192.3 300.1
C3' C2' H2'1 N1' 121.0 123.2
C3' C2' H2'1 H2'2 240.5 238.6
N1' C2' H2'1 H2'2 119.5 115.4
H2'1 C2' N1' H1'1 60.4 246.8
H2'1 C2' N1' H1'2 300.3 80.2
H2'2 C2' C3' H3'1 306.8 59.1
H2'2 C2' C3' H3'2 71.5 179.6
C3' C2' H2'2 N1' 238.5 237.9
C3' C2' H2'2 H2'1 119.2 122.2
N1' C2' H2'2 H2'1 240.7 244.4
H2'2 C2' N1' H1'1 181.1 3.3
H2'2 C2' N1' H1'2 61.1 196.6
H1'1 N1' C2' H2'1 60.4 246.8
H1'1 N1' C2' H2'2 181.1 3.3
C2' N1' H1'1 H1'2 240.0 193.5
H1'2 N1' C2' H2'1 300.3 80.2
H1'2 N1' C2' H2'2 61.1 196.6
C2' N1' H1'2 H1'1 120.0 166.5
C2 N1 C8' H8'1 213.5 149.7
C2 N1 C8' H8'2 332.6 30.2
C8' N1 C2 C6 180.1 180.1
C2 N1 C6 C5 0.2 0.1
C2 N1 C6 H6 180.3 180.0
N3 C2 N1 O2 179.9 180.1
N1 C2 N3 C4 0.5 360.0
C6 N1 C8' H8'1 33.7 329.8
C6 N1 C8' H8'2 152.7 210.3
C8' N1 C6 C2 179.9 179.9
C6 N1 C2 N3 359.4 360.0
C6 N1 C2 O2 179.5 179.9
C4 C5 C6 N1 0.2 359.9
N1 C6 C5 H5 180.2 180.0
C5 C6 N1 H6 180.0 180.1
N3 C2 N1 C6 359.4 360.0
N1 C2 N3 O2 180.1 179.9
C2 N3 C4 C5 0.0 0.0
C2 N3 C4 N4 179.8 180.0
O2 C2 N1 C6 179.5 179.9
N1 C2 O2 N3 179.9 180.1
O2 C2 N3 C4 180.4 180.0
C4 N3 C2 O2 180.4 180.0
C5 C4 N3 N4 180.2 180.0
N3 C4 C5 C6 359.6 0.0
N3 C4 C5 H5 179.6 180.0
N3 C4 N4 HN41 180.1 74.6
N3 C4 N4 HN42 0.1 254.7
N1 C6 C5 C4 0.2 359.9
N3 C4 C5 N4 179.7 180.0
C5 C4 N4 HN41 359.9 254.6
C5 C4 N4 HN42 179.9 74.7
C6 C5 C4 H5 180.0 180.1
C4 C5 C6 H6 180.2 180.0
N3 C4 N4 C5 180.2 180.0
N4 C4 C5 C6 179.9 180.0
N4 C4 C5 H5 359.9 360.0
HN41 N4 C4 HN42 180.0 179.9
N1 C6 C5 H6 180.0 179.9
C6 C5 C4 N4 179.9 180.0
C4 C5 C6 H5 180.0 179.9
H5 C5 C4 N4 359.9 360.0
C4 C5 H5 C6 180.0 180.1
H5 C5 C6 H6 0.2 0.1
N1 C6 H6 C5 180.0 180.1
H6 C6 C5 H5 0.2 0.1
C4 N4 HN41 HN42 180.0 180.1
C4 N4 HN42 HN41 180.0 179.9
CG CB C5' H5'1 293.7 300.2
C5' CB CG HB1 243.8 122.2
C5' CB CG HB2 120.0 236.8
HB1 CB CG HB2 236.2 114.6
CD CG CB HG1 119.2 120.7
CD CG CB HG2 240.0 236.4
CB CG CD CE 220.3 182.4
CB CG CD HD1 100.9 60.0
CB CG CD HD2 340.3 303.0
HG1 CG CB HG2 120.7 115.7
HB1 CB C5' H5'1 177.5 61.7
C5' CB HB1 CG 124.6 234.6
C5' CB HB1 HB2 242.3 118.0
CG CB HB1 HB2 117.7 243.4
HB1 CB CG CD 308.3 60.0
HB1 CB CG HG1 189.1 299.3
HB1 CB CG HG2 68.4 183.6
HB2 CB C5' H5'1 53.7 177.4
C5' CB HB2 CG 233.3 126.1
C5' CB HB2 HB1 116.6 242.1
CG CB HB2 HB1 243.3 116.0
HB2 CB CG CD 72.2 305.4
HB2 CB CG HG1 312.9 184.7
HB2 CB CG HG2 192.2 69.0
CD CG CB HB1 308.3 60.0
CD CG CB HB2 72.2 305.4
CB CG CD HG1 240.8 239.9
CB CG CD HG2 120.0 123.3
HG1 CG CD HG2 239.3 243.4
CE CD CG HD1 119.4 122.4
CE CD CG HD2 240.0 239.4
CG CD CE NZ 170.2 178.3
CG CD CE HE1 51.4 300.0
CG CD CE HE2 290.2 57.6
HD1 CD CG HD2 120.5 117.0
HG1 CG CB HB1 189.1 299.3
HG1 CG CB HB2 312.9 184.7
CB CG HG1 CD 121.0 123.3
CB CG HG1 HG2 240.5 242.2
CD CG HG1 HG2 119.5 118.9
HG1 CG CD CE 339.6 302.5
HG1 CG CD HD1 220.1 180.1
HG1 CG CD HD2 99.6 63.2
HG2 CG CB HB1 68.4 183.6
HG2 CG CB HB2 192.2 69.0
CB CG HG2 CD 238.5 234.6
CB CG HG2 HG1 119.3 116.6
CD CG HG2 HG1 240.7 242.0
HG2 CG CD CE 100.3 59.1
HG2 CG CD HD1 340.8 296.7
HG2 CG CD HD2 220.3 179.7
CE CD CG HG1 339.6 302.5
CE CD CG HG2 100.3 59.1
CG CD CE HD1 240.6 237.1
CG CD CE HD2 120.0 121.1
HD1 CD CE HD2 239.4 244.0
NZ CE CD HE1 118.8 238.3
NZ CE CD HE2 240.0 120.8
CD CE NZ HZ1 0.2 299.9
CD CE NZ HZ2 240.1 133.2
HE1 CE CD HE2 121.2 242.4
HD1 CD CG HG1 220.1 180.1
HD1 CD CG HG2 340.8 296.7
CG CD HD1 CE 120.8 124.6
CG CD HD1 HD2 240.4 241.6
CE CD HD1 HD2 119.6 117.0
HD1 CD CE NZ 289.6 301.3
HD1 CD CE HE1 170.9 62.9
HD1 CD CE HE2 49.7 180.5
HD2 CD CG HG1 99.6 63.2
HD2 CD CG HG2 220.3 179.7
CG CD HD2 CE 238.9 236.6
CG CD HD2 HD1 119.4 119.0
CE CD HD2 HD1 240.6 242.4
HD2 CD CE NZ 50.2 57.3
HD2 CD CE HE1 291.4 178.9
HD2 CD CE HE2 170.2 296.5
NZ CE CD HD1 289.6 301.3
NZ CE CD HD2 50.2 57.3
CD CE NZ HE1 241.2 122.1
CD CE NZ HE2 120.0 239.1
HE1 CE NZ HE2 238.8 117.0
HZ1 NZ CE HZ2 120.0 166.6
HE1 CE CD HD1 170.9 62.9
HE1 CE CD HD2 291.4 178.9
CD CE HE1 NZ 121.6 236.7
CD CE HE1 HE2 240.8 118.7
NZ CE HE1 HE2 119.2 242.0
HE1 CE NZ HZ1 118.9 177.7
HE1 CE NZ HZ2 358.9 11.1
HE2 CE CD HD1 49.7 180.5
HE2 CE CD HD2 170.2 296.5
CD CE HE2 NZ 237.6 122.6
CD CE HE2 HE1 118.8 240.7
NZ CE HE2 HE1 241.2 118.2
HE2 CE NZ HZ1 240.1 60.7
HE2 CE NZ HZ2 120.1 254.1
HZ1 NZ CE HE1 118.9 177.7
HZ1 NZ CE HE2 240.1 60.7
CE NZ HZ1 HZ2 239.9 193.9
HZ2 NZ CE HE1 358.9 11.1
HZ2 NZ CE HE2 120.1 254.1
CE NZ HZ2 HZ1 120.0 166.1