PDB Chemical Component C62
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C62
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
S2 |
O4 |
1.489 |
1.420 |
O3 |
S2 |
1.499 |
1.421 |
S2 |
N6 |
1.641 |
1.656 |
S2 |
C16 |
1.776 |
1.762 |
C16 |
C15 |
1.407 |
1.384 |
C14 |
C15 |
1.402 |
1.380 |
C13 |
C14 |
1.390 |
1.397 |
C18 |
C13 |
1.399 |
1.397 |
C17 |
C18 |
1.389 |
1.380 |
C16 |
C17 |
1.386 |
1.384 |
C13 |
C4 |
1.459 |
1.476 |
C4 |
O2 |
1.357 |
1.346 |
C4 |
C3 |
1.356 |
1.366 |
C3 |
C2 |
1.351 |
1.397 |
O2 |
C1 |
1.298 |
1.349 |
C2 |
C1 |
1.373 |
1.384 |
C1 |
C6 |
1.452 |
1.411 |
C6 |
C7 |
1.415 |
1.366 |
C7 |
S1 |
1.694 |
1.775 |
S1 |
C9 |
1.659 |
1.773 |
C9 |
N2 |
1.364 |
1.341 |
C7 |
C8 |
1.387 |
1.418 |
N2 |
C8 |
1.369 |
1.321 |
C8 |
O1 |
1.232 |
1.218 |
C9 |
O5 |
1.233 |
1.217 |
N6 |
H6N1 |
1.000 |
0.970 |
N6 |
H6N2 |
1.000 |
0.970 |
C17 |
H17 |
1.080 |
1.079 |
C15 |
H15 |
1.080 |
1.080 |
C18 |
H18 |
1.080 |
1.080 |
C14 |
H14 |
1.080 |
1.080 |
C3 |
H3 |
1.080 |
1.081 |
C2 |
H2 |
1.080 |
1.080 |
C6 |
H6C1 |
1.080 |
1.080 |
N2 |
HA |
1.000 |
0.970 |
Bond Angles for C62
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3 |
S2 |
N6 |
109.4 |
106.4 |
O3 |
S2 |
C16 |
109.6 |
106.4 |
N6 |
S2 |
C16 |
110.0 |
107.2 |
S2 |
N6 |
H6N1 |
109.5 |
120.1 |
S2 |
N6 |
H6N2 |
109.4 |
120.0 |
S2 |
C16 |
C15 |
120.3 |
119.8 |
S2 |
C16 |
C17 |
119.8 |
119.8 |
C15 |
C16 |
C17 |
119.9 |
120.3 |
C16 |
C15 |
H15 |
120.0 |
120.0 |
C14 |
C15 |
H15 |
120.0 |
119.9 |
C13 |
C14 |
H14 |
120.2 |
120.1 |
C18 |
C13 |
C4 |
119.0 |
120.2 |
C16 |
C17 |
C18 |
120.0 |
120.1 |
C17 |
C18 |
H18 |
119.8 |
120.0 |
C16 |
C17 |
H17 |
120.0 |
119.9 |
C13 |
C4 |
O2 |
125.0 |
125.6 |
C13 |
C4 |
C3 |
127.2 |
125.6 |
O2 |
C4 |
C3 |
107.8 |
108.7 |
C4 |
O2 |
C1 |
109.3 |
109.4 |
C4 |
C3 |
C2 |
107.0 |
107.2 |
C4 |
C3 |
H3 |
126.5 |
126.4 |
C3 |
C2 |
C1 |
107.7 |
106.7 |
C2 |
C3 |
H3 |
126.5 |
126.4 |
C3 |
C2 |
H2 |
126.1 |
126.6 |
O2 |
C1 |
C2 |
108.3 |
108.0 |
O2 |
C1 |
C6 |
125.4 |
126.0 |
C2 |
C1 |
C6 |
126.3 |
126.0 |
C1 |
C2 |
H2 |
126.1 |
126.7 |
C1 |
C6 |
C7 |
120.5 |
120.0 |
C1 |
C6 |
H6C1 |
119.7 |
120.0 |
C6 |
C7 |
S1 |
125.2 |
127.8 |
C6 |
C7 |
C8 |
124.0 |
127.8 |
C7 |
C6 |
H6C1 |
119.7 |
120.0 |
C7 |
S1 |
C9 |
92.2 |
94.3 |
S1 |
C7 |
C8 |
110.8 |
104.4 |
S1 |
C9 |
N2 |
112.2 |
106.0 |
S1 |
C9 |
O5 |
123.9 |
127.0 |
C9 |
N2 |
C8 |
113.1 |
119.0 |
N2 |
C9 |
O5 |
124.0 |
127.0 |
C9 |
N2 |
HA |
123.4 |
120.5 |
C7 |
C8 |
N2 |
111.6 |
116.2 |
C7 |
C8 |
O1 |
124.2 |
121.9 |
N2 |
C8 |
O1 |
124.2 |
121.9 |
C8 |
N2 |
HA |
123.4 |
120.5 |
H6N1 |
N6 |
H6N2 |
109.5 |
119.9 |
Torsion Angles for C62
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N6 |
S2 |
O3 |
C16 |
120.7 |
114.1 |
O3 |
S2 |
N6 |
H6N1 |
168.7 |
246.4 |
O3 |
S2 |
N6 |
H6N2 |
288.7 |
66.5 |
O3 |
S2 |
C16 |
C15 |
324.3 |
203.5 |
O3 |
S2 |
C16 |
C17 |
146.8 |
23.2 |
O3 |
S2 |
N6 |
C16 |
239.5 |
246.5 |
N6 |
S2 |
C16 |
C15 |
204.0 |
90.0 |
N6 |
S2 |
C16 |
C17 |
26.5 |
269.7 |
H6N1 |
N6 |
S2 |
H6N2 |
240.0 |
179.9 |
O3 |
S2 |
C16 |
N6 |
120.3 |
113.5 |
C16 |
S2 |
N6 |
H6N1 |
289.2 |
360.0 |
C16 |
S2 |
N6 |
H6N2 |
49.2 |
180.0 |
C15 |
C16 |
S2 |
C17 |
177.6 |
180.3 |
S2 |
C16 |
C15 |
H15 |
1.3 |
360.0 |
S2 |
C16 |
C17 |
C18 |
178.6 |
179.8 |
S2 |
C16 |
C17 |
H17 |
358.6 |
360.0 |
S2 |
C16 |
C15 |
C17 |
182.4 |
179.7 |
C14 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
C18 |
1.0 |
359.5 |
C15 |
C16 |
C17 |
H17 |
181.1 |
179.7 |
C14 |
C15 |
C16 |
C17 |
358.9 |
0.3 |
C16 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
C13 |
C14 |
C15 |
H15 |
180.1 |
180.0 |
C18 |
C13 |
C14 |
H14 |
181.0 |
180.0 |
C16 |
C17 |
C18 |
C13 |
0.0 |
0.5 |
C18 |
C13 |
C4 |
O2 |
346.7 |
180.0 |
C18 |
C13 |
C4 |
C3 |
164.3 |
359.7 |
C17 |
C18 |
C13 |
C4 |
179.7 |
179.8 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.2 |
S2 |
C16 |
C17 |
C15 |
177.6 |
180.3 |
C17 |
C16 |
C15 |
H15 |
178.9 |
180.3 |
C16 |
C17 |
C18 |
H18 |
180.0 |
180.3 |
C4 |
C13 |
C14 |
H14 |
0.2 |
0.0 |
O2 |
C4 |
C13 |
C3 |
182.4 |
180.3 |
C13 |
C4 |
O2 |
C1 |
177.7 |
180.0 |
C13 |
C4 |
C3 |
C2 |
181.9 |
180.0 |
C13 |
C4 |
C3 |
H3 |
1.9 |
360.0 |
C13 |
C4 |
O2 |
C3 |
178.0 |
179.7 |
O2 |
C4 |
C3 |
C2 |
359.9 |
359.7 |
O2 |
C4 |
C3 |
H3 |
179.9 |
179.7 |
C4 |
O2 |
C1 |
C2 |
0.7 |
359.8 |
C4 |
O2 |
C1 |
C6 |
180.4 |
180.0 |
C13 |
C4 |
C3 |
O2 |
182.1 |
180.3 |
C3 |
C4 |
O2 |
C1 |
359.7 |
0.3 |
C4 |
C3 |
C2 |
C1 |
0.5 |
0.2 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
C4 |
C3 |
C2 |
H2 |
180.5 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
O2 |
C1 |
C2 |
C3 |
359.3 |
0.0 |
C3 |
C2 |
C1 |
C6 |
179.5 |
179.9 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
C1 |
O2 |
C4 |
C3 |
359.7 |
0.3 |
C3 |
C2 |
C1 |
O2 |
359.3 |
0.0 |
C2 |
C1 |
O2 |
C6 |
180.3 |
179.9 |
O2 |
C1 |
C2 |
H2 |
179.3 |
180.1 |
O2 |
C1 |
C6 |
C7 |
19.9 |
0.0 |
O2 |
C1 |
C6 |
H6C1 |
200.0 |
180.1 |
C1 |
C2 |
C3 |
H3 |
180.5 |
180.2 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
O2 |
C1 |
C2 |
C6 |
179.7 |
180.1 |
C2 |
C1 |
C6 |
C7 |
199.6 |
180.2 |
C2 |
C1 |
C6 |
H6C1 |
19.7 |
0.2 |
O2 |
C1 |
C6 |
C2 |
180.3 |
179.8 |
C6 |
C1 |
C2 |
H2 |
359.5 |
0.0 |
C1 |
C6 |
C7 |
S1 |
10.8 |
0.0 |
C1 |
C6 |
C7 |
C8 |
189.9 |
179.7 |
C7 |
C6 |
C1 |
H6C1 |
180.0 |
180.0 |
C1 |
C6 |
C7 |
H6C1 |
180.0 |
180.0 |
C6 |
C7 |
S1 |
C9 |
179.4 |
180.0 |
S1 |
C7 |
C6 |
C8 |
180.9 |
180.3 |
C6 |
C7 |
C8 |
N2 |
180.8 |
179.8 |
C6 |
C7 |
C8 |
O1 |
1.2 |
360.0 |
C6 |
C7 |
S1 |
C8 |
179.2 |
179.8 |
S1 |
C7 |
C6 |
H6C1 |
190.8 |
180.0 |
C7 |
S1 |
C9 |
N2 |
359.6 |
0.0 |
C7 |
S1 |
C9 |
O5 |
179.9 |
180.0 |
S1 |
C7 |
C8 |
N2 |
360.0 |
359.6 |
S1 |
C7 |
C8 |
O1 |
180.4 |
179.7 |
C9 |
S1 |
C7 |
C8 |
0.2 |
0.2 |
S1 |
C9 |
N2 |
C8 |
0.5 |
359.7 |
N2 |
C9 |
S1 |
O5 |
179.7 |
180.0 |
S1 |
C9 |
N2 |
HA |
180.5 |
180.0 |
S1 |
C9 |
N2 |
O5 |
180.3 |
180.0 |
C7 |
C8 |
N2 |
C9 |
359.7 |
0.5 |
C9 |
N2 |
C8 |
O1 |
179.3 |
180.3 |
C8 |
N2 |
C9 |
HA |
180.0 |
179.7 |
C6 |
C7 |
C8 |
S1 |
180.8 |
180.2 |
C8 |
C7 |
C6 |
H6C1 |
9.9 |
359.7 |
C8 |
C7 |
S1 |
C9 |
0.2 |
0.2 |
C9 |
N2 |
C8 |
C7 |
359.7 |
0.5 |
N2 |
C8 |
C7 |
O1 |
179.6 |
179.9 |
C7 |
C8 |
N2 |
HA |
179.7 |
180.2 |
C8 |
N2 |
C9 |
O5 |
180.1 |
179.7 |
C9 |
N2 |
C8 |
HA |
180.0 |
180.3 |
C7 |
C8 |
N2 |
O1 |
180.4 |
180.1 |
C7 |
C8 |
O1 |
N2 |
179.6 |
179.9 |
O1 |
C8 |
N2 |
HA |
359.3 |
0.1 |
S1 |
C9 |
O5 |
N2 |
179.6 |
180.0 |
O5 |
C9 |
N2 |
C8 |
180.1 |
179.7 |
O5 |
C9 |
N2 |
HA |
0.1 |
360.0 |
H6N1 |
N6 |
S2 |
C16 |
289.2 |
360.0 |
S2 |
N6 |
H6N1 |
H6N2 |
120.0 |
180.1 |
H6N2 |
N6 |
S2 |
C16 |
49.2 |
180.0 |
S2 |
N6 |
H6N2 |
H6N1 |
240.0 |
179.9 |
C16 |
C17 |
H17 |
C18 |
180.0 |
179.8 |
H17 |
C17 |
C18 |
H18 |
0.0 |
0.1 |
H15 |
C15 |
C16 |
C17 |
178.9 |
180.3 |
H18 |
C18 |
C13 |
C4 |
359.7 |
0.0 |
H14 |
C14 |
C15 |
H15 |
0.1 |
359.9 |
C4 |
C3 |
H3 |
C2 |
180.0 |
180.1 |
H3 |
C3 |
C2 |
C1 |
180.5 |
180.2 |
H3 |
C3 |
C2 |
H2 |
0.5 |
0.1 |
C3 |
C2 |
H2 |
C1 |
180.0 |
180.2 |
H2 |
C2 |
C3 |
H3 |
0.5 |
0.1 |
H2 |
C2 |
C1 |
C6 |
359.5 |
0.0 |
C1 |
C6 |
H6C1 |
C7 |
180.0 |
180.0 |
H6C1 |
C6 |
C7 |
S1 |
190.8 |
180.0 |
H6C1 |
C6 |
C7 |
C8 |
9.9 |
359.7 |
C9 |
N2 |
HA |
C8 |
180.0 |
179.7 |
HA |
N2 |
C9 |
O5 |
0.1 |
360.0 |
HA |
N2 |
C8 |
O1 |
359.3 |
0.1 |