PDB Chemical Component C5V

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C5V

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C15	C14	1.406	1.386
C15	C16	1.418	1.383
C14	C11	1.407	1.386
C16	C17	1.413	1.386
C11	C12	1.402	1.410
C11	C10	1.508	1.477
C17	C12	1.401	1.387
O18	C10	1.226	1.215
C12	C13	1.507	1.478
C10	N9	1.356	1.346
C13	N9	1.360	1.346
C13	O19	1.228	1.215
N9	C1	1.457	1.465
C7	C6	1.403	1.381
C7	C2	1.399	1.382
C6	C5	1.408	1.389
C1	C2	1.529	1.507
C2	C3	1.406	1.383
C5	N8	1.423	1.398
C5	C4	1.412	1.389
N8	C20	1.376	1.348
C3	C4	1.411	1.381
C20	C21	1.519	1.508
C20	O22	1.231	1.213
C21	C24	1.543	1.530
C21	C23	1.555	1.531
C30	C29	1.409	1.386
C30	C25	1.418	1.387
C29	C28	1.408	1.383
C24	C23	1.541	1.531
C23	C25	1.534	1.507
C25	C26	1.408	1.381
C28	N27	1.367	1.318
C26	N27	1.359	1.319
C1	H1	1.100	1.090
C1	H2	1.100	1.091
C3	H3	1.080	1.080
C14	H4	1.080	1.081
C15	H5	1.080	1.080
C16	H6	1.080	1.079
C17	H7	1.080	1.080
C21	H8	1.100	1.090
C23	H9	1.100	1.090
C24	H10	1.100	1.090
C24	H11	1.101	1.090
C26	H12	1.080	1.079
C28	H13	1.080	1.079
C29	H14	1.080	1.079
C30	H15	1.080	1.079
C4	H16	1.079	1.080
C6	H17	1.080	1.080
C7	H18	1.080	1.080
N8	H19	1.000	0.970

Bond Angles for C5V

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C15	C14	H4	121.5	120.1
C15	C16	C17	121.8	120.5
C16	C15	H5	119.6	119.8
C15	C16	H6	119.1	119.7
C14	C11	C10	132.3	134.3
C17	C16	H6	119.1	119.8
C16	C17	H7	121.7	120.1
C12	C11	C10	105.8	105.9
C11	C12	C13	105.9	105.9
C11	C10	N9	109.2	108.6
C12	C13	N9	109.1	108.6
C12	C13	O19	123.1	125.8
N9	C13	O19	127.8	125.7
N9	C1	H1	108.7	109.5
N9	C1	H2	108.7	109.4
C7	C6	H17	119.4	120.0
C6	C5	N8	116.6	120.1
C1	C2	C3	120.2	119.9
C2	C1	H1	108.7	109.5
C2	C1	H2	108.6	109.5
C2	C3	C4	120.2	120.1
C2	C3	H3	119.9	120.0
C5	N8	H19	118.7	120.0
C5	C4	H16	119.7	120.0
N8	C20	O22	124.5	120.0
C4	C3	H3	119.9	119.9
C3	C4	H16	119.6	120.0
C21	C20	O22	118.1	120.0
C20	C21	C24	124.5	117.5
C20	C21	C23	113.7	117.5
C20	C21	H8	115.7	115.5
C23	C21	C24	59.7	60.0
C21	C24	C23	60.6	60.0
C24	C21	H8	115.3	117.6
C21	C24	H10	119.9	117.5
C21	C24	H11	119.9	117.5
C21	C23	C25	116.2	117.5
C23	C21	H8	115.0	117.5
C21	C23	H9	115.9	117.5
C30	C29	H14	120.9	120.5
C29	C28	N27	120.5	120.7
C29	C28	H13	119.8	119.6
C24	C23	C25	120.5	117.5
C24	C23	H9	116.1	117.5
C23	C25	C26	119.2	120.4
C25	C23	H9	116.2	115.6
C25	C26	N27	120.1	120.7
C25	C26	H12	119.9	119.7
C26	N27	C28	122.1	121.8
N27	C28	H13	119.7	119.7
N27	C26	H12	120.0	119.6
H1	C1	H2	109.5	109.4
H10	C24	H11	109.5	115.6

Torsion Angles for C5V

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C15	C14	C11	C10	178.9	179.6
C16	C15	C14	H4	180.8	180.1
C17	C16	C15	H6	180.0	180.2
C15	C16	C17	H7	180.9	180.0
C12	C11	C14	C10	181.0	180.4
C14	C11	C10	N9	180.7	180.4
C17	C16	C15	H5	178.7	180.2
C15	C16	C17	H6	180.0	179.8
C14	C11	C12	C10	179.2	179.7
C12	C11	C10	N9	359.8	360.0
C11	C12	C13	N9	1.1	360.0
C11	C12	C13	O19	182.2	180.0
C10	C11	C12	C13	359.5	0.0
C17	C12	C11	C10	180.5	180.0
C17	C12	C13	N9	179.9	180.0
C17	C12	C13	O19	1.0	360.0
C13	C12	C11	C10	359.5	0.0
N9	C13	C12	O19	178.9	180.0
C10	N9	C13	O19	177.6	180.0
C10	N9	C1	H1	180.1	149.9
C10	N9	C1	H2	299.1	30.0
C11	C10	N9	C13	0.9	0.0
C12	C13	N9	O19	181.2	180.0
C13	N9	C1	H1	355.9	330.0
C13	N9	C1	H2	114.9	210.0
C12	C13	O19	N9	178.7	180.0
C2	C1	N9	H1	239.5	120.1
C2	C1	N9	H2	120.5	240.0
H1	C1	N9	H2	241.0	120.0
C7	C6	C5	N8	174.2	179.8
C7	C2	C1	H1	142.5	29.8
C7	C2	C1	H2	23.5	149.8
C7	C2	C3	H3	180.5	180.2
C6	C5	N8	H19	57.7	326.8
C6	C5	C4	H16	175.5	180.0
N9	C1	C2	H1	120.5	239.9
N9	C1	C2	H2	239.5	120.0
C1	C2	C3	C4	176.4	180.0
C1	C2	C3	H3	356.4	360.0
H1	C1	C2	H2	119.0	240.0
C3	C2	C1	H1	326.7	210.0
C3	C2	C1	H2	207.7	330.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	H16	182.2	180.0
N8	C5	C4	H16	6.3	0.0
C5	N8	C20	O22	355.0	354.8
C5	C4	C3	H3	182.2	180.0
C3	C4	C5	H16	180.0	179.9
C21	C20	N8	O22	177.3	179.9
N8	C20	C21	H8	352.2	325.7
C2	C3	C4	H3	180.0	180.0
C5	C4	C3	H16	180.0	180.1
N8	C20	C21	O22	182.5	180.1
C23	C21	C20	C24	68.4	68.6
C20	C21	C24	C23	99.3	107.5
C24	C21	C20	H8	155.1	145.7
C20	C21	C24	H10	209.0	214.9
C20	C21	C24	H11	349.7	360.0
C20	C21	C23	C25	131.0	145.0
C23	C21	C20	H8	223.6	214.3
C20	C21	C23	H9	349.1	360.0
O22	C20	C21	C24	324.7	291.4
O22	C20	C21	C23	33.2	360.0
O22	C20	C21	H8	169.6	145.7
C24	C21	C20	O22	324.7	291.4
C20	C21	C24	H8	204.8	215.0
C24	C21	C23	C25	248.4	252.5
C23	C21	C24	H8	105.4	107.5
C24	C21	C23	H9	106.5	107.5
C21	C24	C23	C25	104.5	107.5
C21	C24	C23	H9	253.9	252.5
H10	C24	C21	H11	219.2	215.0
C23	C21	C20	O22	33.2	360.0
C20	C21	C23	C24	242.6	252.5
C20	C21	C23	H8	136.8	145.0
C23	C21	C24	C23	-0.0	360.0
C24	C21	C23	H8	254.2	252.4
C23	C21	C24	H10	109.6	107.5
C23	C21	C24	H11	250.4	252.5
C24	C23	C21	C25	111.6	107.5
C24	C23	C21	H9	253.5	252.5
C21	C23	C25	C26	170.6	60.0
C25	C23	C21	H9	141.9	145.0
C30	C29	C28	N27	359.1	0.2
C30	C29	C28	H13	179.2	180.0
C30	C25	C23	H9	127.9	25.4
C30	C25	C26	N27	2.7	0.3
C30	C25	C26	H12	182.7	180.3
C26	N27	C28	C29	0.8	359.7
N27	C28	C29	H13	180.0	180.2
C23	C24	C21	H8	254.6	252.5
C21	C24	C23	H10	109.6	107.5
C21	C24	C23	H11	250.4	252.5
C21	C23	C24	C25	255.5	252.5
C24	C23	C21	H8	105.8	107.6
C21	C23	C24	H9	106.1	107.5
C24	C23	C25	C26	101.8	351.4
C25	C23	C24	H9	210.6	214.9
C25	C23	C21	C24	248.4	252.5
C25	C23	C21	H8	354.2	0.1
C21	C23	C25	H9	218.2	214.3
C24	C23	C25	H9	149.4	145.7
C23	C25	C26	N27	178.4	180.0
C23	C25	C26	H12	358.4	360.0
C26	C25	C23	H9	312.4	205.7
C25	C26	N27	C28	358.2	0.0
N27	C26	C25	H12	180.0	180.0
C29	C28	N27	H13	180.0	179.8
C28	N27	C26	H12	178.2	180.0
C29	C28	N27	C26	0.8	359.7
C25	C26	N27	H12	180.0	180.0
C26	N27	C28	H13	180.8	180.0
N9	C1	H1	H2	118.5	240.1
H1	C1	C2	C3	326.7	210.0
C2	C1	H1	H2	241.5	120.0
N9	C1	H2	H1	241.5	120.0
H2	C1	C2	C3	207.7	330.0
C2	C1	H2	H1	118.5	240.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	H16	2.2	360.0
H4	C14	C11	C10	359.0	359.5
H5	C15	C14	H4	0.8	0.0
H5	C15	C16	C17	178.7	180.2
H5	C15	C16	H6	358.7	0.0
C15	C16	H6	C17	180.0	180.2
H6	C16	C15	H5	358.7	0.0
H6	C16	C17	H7	0.9	0.2
H7	C17	C16	H6	0.9	0.2
H8	C21	C20	O22	169.6	145.7
C20	C21	H8	C24	157.5	145.7
C20	C21	H8	C23	224.1	214.4
C23	C21	H8	C24	293.3	291.3
H8	C21	C24	C23	254.6	252.5
H8	C21	C24	H10	4.2	359.9
H8	C21	C24	H11	144.9	145.0
H8	C21	C23	C25	354.2	0.1
H8	C21	C23	H9	212.3	215.0
H9	C23	C21	C24	106.5	107.5
C21	C23	H9	C25	141.9	145.7
H9	C23	C21	H8	212.3	215.0
C24	C23	H9	C25	209.2	214.3
H9	C23	C25	C26	312.4	205.7
C21	C24	H10	C23	288.9	291.4
H10	C24	C21	H8	4.2	359.9
C21	C24	H10	H11	144.4	145.7
H10	C24	C23	C25	354.9	360.0
H10	C24	C23	H9	144.3	145.0
C21	C24	H11	C23	71.1	68.7
H11	C24	C21	H8	144.9	145.0
C21	C24	H11	H10	215.6	214.3
H11	C24	C23	C25	214.1	215.0
H11	C24	C23	H9	3.6	0.1
C25	C26	H12	N27	180.0	180.0
H12	C26	N27	C28	178.2	180.0
C29	C28	H13	N27	180.0	180.2
H14	C29	C28	N27	179.1	179.9
H14	C29	C28	H13	359.1	359.7
H15	C30	C29	H14	1.8	0.3
H16	C4	C3	H3	2.2	360.0
H17	C6	C5	N8	354.2	360.0
H18	C7	C6	H17	358.6	359.8
H19	N8	C20	O22	175.0	174.7