PDB Chemical Component C5U
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C5U
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C13 |
O12 |
1.412 |
1.428 |
| O12 |
C10 |
1.398 |
1.350 |
| O11 |
C10 |
1.180 |
1.217 |
| C18 |
C17 |
1.393 |
1.382 |
| C18 |
C19 |
1.391 |
1.382 |
| C17 |
C16 |
1.392 |
1.382 |
| C10 |
C09 |
1.537 |
1.414 |
| C19 |
C20 |
1.390 |
1.382 |
| C16 |
C15 |
1.390 |
1.382 |
| C20 |
C15 |
1.394 |
1.382 |
| C20 |
N21 |
1.461 |
1.480 |
| C24 |
C08 |
1.541 |
1.506 |
| C15 |
C14 |
1.548 |
1.507 |
| C09 |
C08 |
1.523 |
1.344 |
| C09 |
C14 |
1.530 |
1.504 |
| N21 |
O22 |
1.397 |
1.218 |
| N21 |
O23 |
1.175 |
1.218 |
| C08 |
N07 |
1.439 |
1.369 |
| C14 |
C05 |
1.532 |
1.503 |
| C05 |
C06 |
1.524 |
1.345 |
| C05 |
C02 |
1.533 |
1.414 |
| N07 |
C06 |
1.444 |
1.368 |
| O03 |
C02 |
1.405 |
1.349 |
| O03 |
C04 |
1.411 |
1.430 |
| C06 |
C25 |
1.537 |
1.507 |
| C02 |
O01 |
1.181 |
1.217 |
| C13 |
H1 |
1.099 |
1.090 |
| C13 |
H2 |
1.100 |
1.090 |
| C13 |
H3 |
1.099 |
1.090 |
| C17 |
H4 |
1.080 |
1.080 |
| C24 |
H5 |
1.100 |
1.089 |
| C24 |
H6 |
1.100 |
1.090 |
| C24 |
H7 |
1.100 |
1.090 |
| C04 |
H8 |
1.100 |
1.090 |
| C04 |
H9 |
1.100 |
1.090 |
| C04 |
H10 |
1.100 |
1.090 |
| N07 |
H13 |
0.999 |
0.970 |
| C14 |
H17 |
1.100 |
1.090 |
| C16 |
H18 |
1.080 |
1.081 |
| C18 |
H19 |
1.080 |
1.080 |
| C19 |
H20 |
1.080 |
1.081 |
| C25 |
H21 |
1.100 |
1.090 |
| C25 |
H22 |
1.100 |
1.090 |
| C25 |
H23 |
1.100 |
1.090 |
Bond Angles for C5U
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O12 |
C13 |
H1 |
109.5 |
109.4 |
| O12 |
C13 |
H2 |
109.4 |
109.5 |
| O12 |
C13 |
H3 |
109.5 |
109.5 |
| C18 |
C17 |
H4 |
120.1 |
120.0 |
| C19 |
C18 |
H19 |
119.8 |
120.0 |
| C18 |
C19 |
H20 |
120.1 |
120.0 |
| C16 |
C17 |
H4 |
120.1 |
120.0 |
| C17 |
C16 |
H18 |
120.0 |
119.9 |
| C10 |
C09 |
C08 |
118.2 |
119.3 |
| C10 |
C09 |
C14 |
119.3 |
119.3 |
| C19 |
C20 |
N21 |
119.8 |
120.0 |
| C20 |
C15 |
C14 |
120.1 |
120.0 |
| C20 |
N21 |
O22 |
120.1 |
120.0 |
| C20 |
N21 |
O23 |
120.0 |
120.0 |
| C24 |
C08 |
N07 |
119.4 |
119.6 |
| C08 |
C24 |
H5 |
109.5 |
109.5 |
| C08 |
C24 |
H6 |
109.5 |
109.5 |
| C08 |
C24 |
H7 |
109.5 |
109.4 |
| C15 |
C14 |
C09 |
107.3 |
109.2 |
| C15 |
C14 |
C05 |
107.4 |
109.4 |
| C15 |
C14 |
H17 |
109.5 |
109.2 |
| C09 |
C14 |
H17 |
109.7 |
109.2 |
| O22 |
N21 |
O23 |
119.9 |
120.0 |
| C08 |
N07 |
H13 |
120.4 |
119.8 |
| C05 |
C06 |
C25 |
118.5 |
119.6 |
| N07 |
C06 |
C25 |
119.4 |
119.6 |
| O03 |
C04 |
H8 |
109.5 |
109.5 |
| O03 |
C04 |
H9 |
109.5 |
109.5 |
| O03 |
C04 |
H10 |
109.5 |
109.4 |
| C06 |
C25 |
H21 |
109.5 |
109.5 |
| C06 |
C25 |
H22 |
109.4 |
109.5 |
| C06 |
C25 |
H23 |
109.4 |
109.5 |
| H1 |
C13 |
H2 |
109.5 |
109.4 |
| H1 |
C13 |
H3 |
109.4 |
109.5 |
| H2 |
C13 |
H3 |
109.5 |
109.5 |
| H5 |
C24 |
H6 |
109.4 |
109.5 |
| H5 |
C24 |
H7 |
109.5 |
109.5 |
| H6 |
C24 |
H7 |
109.5 |
109.4 |
| H8 |
C04 |
H9 |
109.5 |
109.5 |
| H8 |
C04 |
H10 |
109.5 |
109.4 |
| H9 |
C04 |
H10 |
109.5 |
109.5 |
| H21 |
C25 |
H22 |
109.5 |
109.5 |
| H21 |
C25 |
H23 |
109.5 |
109.4 |
| H22 |
C25 |
H23 |
109.5 |
109.4 |
Torsion Angles for C5U
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C13 |
O12 |
H2 |
239.9 |
240.0 |
| H1 |
C13 |
O12 |
H3 |
120.0 |
120.0 |
| H2 |
C13 |
O12 |
H3 |
240.0 |
239.9 |
| O12 |
C10 |
C09 |
C14 |
326.5 |
359.9 |
| O11 |
C10 |
C09 |
C14 |
147.0 |
180.2 |
| C16 |
C17 |
C18 |
H4 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H18 |
179.6 |
180.0 |
| C19 |
C18 |
C17 |
H4 |
179.9 |
179.7 |
| C18 |
C19 |
C20 |
N21 |
180.0 |
180.0 |
| C18 |
C17 |
C16 |
H4 |
180.0 |
180.0 |
| C15 |
C14 |
C09 |
C10 |
70.6 |
75.9 |
| C10 |
C09 |
C14 |
H17 |
311.8 |
316.4 |
| C19 |
C20 |
N21 |
O22 |
214.9 |
139.3 |
| C19 |
C20 |
N21 |
O23 |
34.9 |
319.3 |
| C16 |
C15 |
C14 |
H17 |
165.3 |
172.1 |
| C20 |
C15 |
C14 |
C09 |
225.2 |
232.4 |
| C20 |
C15 |
C14 |
C05 |
103.2 |
111.1 |
| C20 |
C15 |
C14 |
H17 |
344.2 |
351.8 |
| N21 |
C20 |
C15 |
C14 |
0.6 |
0.0 |
| O22 |
N21 |
C20 |
O23 |
180.0 |
180.0 |
| C10 |
C09 |
C08 |
C24 |
334.8 |
359.5 |
| C24 |
C08 |
N07 |
H13 |
19.8 |
342.3 |
| H5 |
C24 |
C08 |
H6 |
240.0 |
239.9 |
| H5 |
C24 |
C08 |
H7 |
120.0 |
120.0 |
| H6 |
C24 |
C08 |
H7 |
240.0 |
240.1 |
| C10 |
C09 |
C14 |
C15 |
70.6 |
75.9 |
| C09 |
C14 |
C15 |
H17 |
241.0 |
240.6 |
| C10 |
C09 |
C08 |
C14 |
159.0 |
180.1 |
| C09 |
C08 |
C24 |
H5 |
180.0 |
180.0 |
| C09 |
C08 |
C24 |
H6 |
300.0 |
300.1 |
| C09 |
C08 |
C24 |
H7 |
60.0 |
60.0 |
| C15 |
C14 |
C09 |
C08 |
229.5 |
256.0 |
| C09 |
C08 |
N07 |
H13 |
212.4 |
162.3 |
| C10 |
C09 |
C14 |
C08 |
201.2 |
179.9 |
| C15 |
C14 |
C09 |
C05 |
241.7 |
239.5 |
| C15 |
C14 |
C09 |
H17 |
118.8 |
119.4 |
| C20 |
N21 |
O22 |
O23 |
180.0 |
180.0 |
| C20 |
N21 |
O23 |
O22 |
180.0 |
180.0 |
| C10 |
C09 |
C08 |
N07 |
142.1 |
179.6 |
| N07 |
C08 |
C24 |
H5 |
12.7 |
359.9 |
| N07 |
C08 |
C24 |
H6 |
132.7 |
120.0 |
| N07 |
C08 |
C24 |
H7 |
252.7 |
240.0 |
| C08 |
N07 |
C06 |
C25 |
141.0 |
197.7 |
| C10 |
C09 |
C14 |
C05 |
188.9 |
196.3 |
| C15 |
C14 |
C05 |
C09 |
118.2 |
120.4 |
| C15 |
C14 |
C05 |
H17 |
241.2 |
240.6 |
| C14 |
C05 |
C06 |
C25 |
187.8 |
180.6 |
| C15 |
C14 |
C05 |
C06 |
145.9 |
103.9 |
| N07 |
C06 |
C05 |
C25 |
157.8 |
179.9 |
| C05 |
C06 |
C25 |
H21 |
180.0 |
84.5 |
| C05 |
C06 |
C25 |
H22 |
300.0 |
204.5 |
| C05 |
C06 |
C25 |
H23 |
60.0 |
324.5 |
| C15 |
C14 |
C05 |
C02 |
307.7 |
284.1 |
| C24 |
C08 |
N07 |
C06 |
199.8 |
162.3 |
| C05 |
C06 |
N07 |
C25 |
202.4 |
180.1 |
| N07 |
C06 |
C25 |
H21 |
22.4 |
264.5 |
| N07 |
C06 |
C25 |
H22 |
142.4 |
24.6 |
| N07 |
C06 |
C25 |
H23 |
262.4 |
144.5 |
| H8 |
C04 |
O03 |
H9 |
240.0 |
239.9 |
| H8 |
C04 |
O03 |
H10 |
120.0 |
119.9 |
| H9 |
C04 |
O03 |
H10 |
240.0 |
240.0 |
| H21 |
C25 |
C06 |
H22 |
240.0 |
239.9 |
| H21 |
C25 |
C06 |
H23 |
120.0 |
120.0 |
| H22 |
C25 |
C06 |
H23 |
240.0 |
240.1 |
| O12 |
C13 |
H1 |
H2 |
120.0 |
120.0 |
| O12 |
C13 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C13 |
H1 |
H3 |
120.0 |
120.0 |
| O12 |
C13 |
H2 |
H1 |
240.0 |
240.0 |
| O12 |
C13 |
H2 |
H3 |
120.0 |
120.1 |
| H1 |
C13 |
H2 |
H3 |
240.0 |
240.0 |
| O12 |
C13 |
H3 |
H1 |
120.0 |
120.0 |
| O12 |
C13 |
H3 |
H2 |
240.0 |
239.9 |
| H1 |
C13 |
H3 |
H2 |
120.0 |
120.0 |
| H4 |
C17 |
C16 |
H18 |
359.6 |
360.0 |
| H5 |
C24 |
C08 |
N07 |
12.7 |
359.9 |
| C08 |
C24 |
H5 |
H6 |
120.0 |
120.1 |
| C08 |
C24 |
H5 |
H7 |
240.0 |
240.0 |
| H6 |
C24 |
H5 |
H7 |
120.0 |
120.0 |
| H6 |
C24 |
C08 |
N07 |
132.7 |
120.0 |
| C08 |
C24 |
H6 |
H5 |
240.0 |
239.9 |
| C08 |
C24 |
H6 |
H7 |
120.0 |
119.9 |
| H5 |
C24 |
H6 |
H7 |
240.0 |
240.0 |
| H7 |
C24 |
C08 |
N07 |
252.7 |
240.0 |
| C08 |
C24 |
H7 |
H5 |
120.0 |
120.0 |
| C08 |
C24 |
H7 |
H6 |
240.0 |
240.0 |
| H5 |
C24 |
H7 |
H6 |
120.0 |
120.0 |
| O03 |
C04 |
H8 |
H9 |
120.0 |
120.0 |
| O03 |
C04 |
H8 |
H10 |
240.0 |
240.1 |
| H9 |
C04 |
H8 |
H10 |
120.0 |
120.0 |
| O03 |
C04 |
H9 |
H8 |
240.0 |
240.0 |
| O03 |
C04 |
H9 |
H10 |
120.0 |
120.0 |
| H8 |
C04 |
H9 |
H10 |
240.0 |
240.0 |
| O03 |
C04 |
H10 |
H8 |
120.0 |
119.9 |
| O03 |
C04 |
H10 |
H9 |
240.0 |
240.0 |
| H8 |
C04 |
H10 |
H9 |
120.0 |
120.1 |
| H13 |
N07 |
C06 |
C25 |
321.0 |
17.7 |
| C15 |
C14 |
H17 |
C09 |
242.6 |
240.6 |
| C15 |
C14 |
H17 |
C05 |
117.5 |
119.5 |
| H18 |
C16 |
C17 |
H4 |
359.6 |
360.0 |
| H19 |
C18 |
C17 |
H4 |
359.9 |
360.0 |
| H19 |
C18 |
C19 |
H20 |
0.3 |
359.7 |
| H20 |
C19 |
C18 |
H19 |
0.3 |
359.7 |
| H20 |
C19 |
C20 |
N21 |
0.0 |
0.3 |
| C06 |
C25 |
H21 |
H22 |
120.0 |
120.0 |
| C06 |
C25 |
H21 |
H23 |
240.0 |
240.0 |
| H22 |
C25 |
H21 |
H23 |
120.1 |
119.9 |
| C06 |
C25 |
H22 |
H21 |
240.0 |
239.9 |
| C06 |
C25 |
H22 |
H23 |
120.0 |
120.0 |
| H21 |
C25 |
H22 |
H23 |
240.0 |
240.1 |
| C06 |
C25 |
H23 |
H21 |
120.0 |
120.1 |
| C06 |
C25 |
H23 |
H22 |
240.1 |
240.0 |
| H21 |
C25 |
H23 |
H22 |
120.1 |
120.0 |