PDB Chemical Component C5I

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C5I

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.354	1.344
C1	C6	1.459	1.462
C2	N3	1.374	1.368
N3	C5	1.384	1.375
C5	C6	1.422	1.403
C5	N10	1.341	1.332
C6	C7	1.421	1.403
C7	C8	1.404	1.406
C7	N13	1.373	1.366
C8	C9	1.414	1.403
C8	N11	1.359	1.347
C9	N10	1.328	1.311
N11	N12	1.291	1.287
N12	N13	1.401	1.404
N13	C14	1.468	1.465
C14	C16	1.558	1.531
C14	C20	1.540	1.532
C16	C17	1.526	1.531
C17	C18	1.544	1.532
C18	N19	1.485	1.469
N19	C20	1.473	1.470
N19	C21	1.367	1.348
C21	O22	1.231	1.212
C21	C23	1.515	1.508
C23	C24	1.472	1.472
C24	N25	1.133	1.136
C1	H1	1.080	1.079
C2	H2	1.080	1.080
N3	HN3	1.000	0.970
C9	H9	1.080	1.080
C14	H14	1.100	1.090
C16	H16	1.100	1.090
C16	H16A	1.101	1.089
C17	H17	1.100	1.089
C17	H17A	1.100	1.089
C18	H18	1.100	1.090
C18	H18A	1.100	1.091
C20	H20	1.100	1.090
C20	H20A	1.100	1.090
C23	H23	1.100	1.090
C23	H23A	1.100	1.090

Bond Angles for C5I

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	106.9	106.9
C1	C2	N3	110.3	109.8
C2	C1	H1	126.6	126.5
C1	C2	H2	124.8	125.2
C1	C6	C5	106.2	106.3
C1	C6	C7	134.8	134.5
C6	C1	H1	126.5	126.6
C2	N3	C5	109.4	110.0
N3	C2	H2	124.8	125.1
C2	N3	HN3	125.3	125.0
N3	C5	C6	107.2	107.0
N3	C5	N10	133.1	132.7
C5	N3	HN3	125.3	125.0
C6	C5	N10	119.7	120.2
C5	C6	C7	119.0	119.1
C5	N10	C9	122.5	122.5
C6	C7	C8	119.0	118.4
C6	C7	N13	135.6	135.4
C8	C7	N13	105.4	106.3
C7	C8	C9	118.3	118.6
C7	C8	N11	107.4	107.6
C7	N13	N12	108.2	106.6
C7	N13	C14	124.8	126.7
C9	C8	N11	134.4	133.8
C8	C9	N10	121.6	121.2
C8	C9	H9	119.2	119.4
C8	N11	N12	111.1	110.3
N10	C9	H9	119.2	119.4
N11	N12	N13	107.8	109.3
N12	N13	C14	126.4	126.7
N13	C14	C16	106.7	109.5
N13	C14	C20	111.8	109.5
N13	C14	H14	109.9	109.5
C16	C14	C20	110.8	109.3
C14	C16	C17	111.3	109.5
C16	C14	H14	108.7	109.5
C14	C16	H16	109.0	109.5
C14	C16	H16A	109.0	109.5
C14	C20	N19	105.6	108.8
C20	C14	H14	108.9	109.6
C14	C20	H20	110.4	109.6
C14	C20	H20A	110.4	109.6
C16	C17	C18	108.2	109.3
C17	C16	H16	109.0	109.4
C17	C16	H16A	109.0	109.5
C16	C17	H17	109.8	109.5
C16	C17	H17A	109.8	109.5
C17	C18	N19	107.7	108.8
C18	C17	H17	109.8	109.5
C18	C17	H17A	109.8	109.5
C17	C18	H18	109.9	109.6
C17	C18	H18A	109.9	109.5
C18	N19	C20	116.9	118.7
C18	N19	C21	122.1	120.7
N19	C18	H18	109.9	109.6
N19	C18	H18A	109.9	109.5
C20	N19	C21	120.7	120.6
N19	C20	H20	110.4	109.5
N19	C20	H20A	110.4	109.6
N19	C21	O22	120.3	120.0
N19	C21	C23	120.0	120.0
O22	C21	C23	119.7	120.0
C21	C23	C24	112.2	109.5
C21	C23	H23	108.8	109.4
C21	C23	H23A	108.8	109.4
C23	C24	N25	179.8	180.0
C24	C23	H23	108.8	109.5
C24	C23	H23A	108.8	109.5
H16	C16	H16A	109.5	109.4
H17	C17	H17A	109.5	109.6
H18	C18	H18A	109.5	109.7
H20	C20	H20A	109.5	109.8
H23	C23	H23A	109.5	109.5

Torsion Angles for C5I

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	C5	359.7	0.1
C2	C1	C6	C7	178.1	180.0
C6	C1	C2	H1	180.0	180.2
C1	C2	N3	C5	359.7	0.0
N3	C2	C1	H2	180.0	180.0
C1	C2	N3	HN3	179.7	180.0
C6	C1	C2	N3	0.4	359.9
C2	C1	C6	H1	180.0	179.8
C6	C1	C2	H2	180.3	180.0
N3	C5	C6	C1	0.1	359.9
C1	C6	C5	N10	179.2	180.0
C5	C6	C1	C7	181.6	180.1
C1	C6	C7	C8	182.0	180.0
C1	C6	C7	N13	359.2	0.1
N3	C2	C1	C6	0.4	359.9
N3	C2	C1	H1	180.4	179.8
C1	C2	N3	H2	180.0	180.0
C2	N3	C5	C6	0.1	0.0
C2	N3	C5	N10	181.2	180.0
C5	N3	C2	HN3	180.0	180.0
C1	C6	C5	N3	0.1	359.9
C5	N3	C2	H2	179.7	180.0
C2	N3	C5	HN3	180.0	180.0
C6	C5	N3	N10	178.9	180.1
N3	C5	C6	C7	181.4	180.0
N3	C5	N10	C9	178.1	180.0
C1	C6	C5	C7	178.7	179.9
C5	C6	C1	H1	179.7	180.3
N3	C5	C6	N10	180.9	179.9
C6	C5	N3	HN3	180.1	180.0
C6	C5	N10	C9	359.3	359.9
C5	C6	C7	C8	0.3	359.9
C5	C6	C7	N13	177.5	180.0
N3	C5	N10	C6	178.8	180.1
N10	C5	N3	HN3	1.2	360.0
N10	C5	C6	C7	0.5	0.1
C8	C9	N10	C5	0.2	0.1
C5	N10	C9	H9	180.2	180.0
C1	C6	C7	C5	181.8	180.1
C7	C6	C1	H1	358.1	0.2
C7	C6	C5	N10	0.5	0.1
C8	C7	C6	N13	182.8	179.9
C6	C7	C8	C9	359.2	0.1
C6	C7	C8	N11	178.2	180.0
C6	C7	N13	N12	184.5	179.9
C6	C7	N13	C14	356.3	360.0
C6	C7	C8	N13	178.0	180.1
C8	C7	N13	N12	2.0	0.0
C8	C7	N13	C14	173.7	180.0
C9	C8	C7	N11	181.0	180.0
C7	C8	C9	N10	0.6	359.9
C7	C8	C9	H9	180.6	180.0
C7	C8	N11	N12	357.4	0.0
C6	C7	N13	C8	182.6	179.9
N13	C7	C8	C9	181.2	180.0
N13	C7	C8	N11	0.2	360.0
N11	N12	N13	C7	356.4	360.0
N12	N13	C7	C14	188.3	180.0
C7	N13	C14	C16	283.5	240.0
C7	N13	C14	C20	162.3	120.2
C7	N13	C14	H14	41.2	0.1
C5	N10	C9	C8	0.2	0.1
C9	C8	C7	N13	181.2	180.0
C7	C8	C9	N11	178.7	180.0
C9	C8	N11	N12	176.2	180.0
N10	C9	C8	H9	180.0	180.0
N11	C8	C7	N13	0.2	360.0
C7	C8	N11	C9	181.2	180.0
N11	C8	C9	N10	182.0	180.0
N11	C8	C9	H9	1.9	0.0
C8	N11	N12	N13	3.8	0.0
N10	C9	C8	N11	182.0	180.0
C8	C9	N10	H9	180.0	180.0
C7	N13	N12	N11	356.4	360.0
N11	N12	N13	C14	184.9	180.0
C7	N13	N12	C14	171.6	180.0
N12	N13	C14	C16	93.8	60.0
N12	N13	C14	C20	332.5	300.2
N12	N13	C14	H14	211.5	180.1
C7	N13	C14	N12	189.8	180.0
C16	C14	N13	C20	121.3	119.8
N13	C14	C16	C17	180.0	178.7
C16	C14	N13	H14	242.3	240.0
N13	C14	C16	H16	300.3	298.6
N13	C14	C16	H16A	59.8	58.6
N13	C14	C20	N19	174.0	174.6
C20	C14	N13	H14	121.0	120.1
N13	C14	C20	H20	293.4	294.3
N13	C14	C20	H20A	54.6	54.8
N13	C14	C16	C20	238.1	240.1
N13	C14	C16	H14	118.5	120.0
C16	C14	C20	N19	55.1	54.7
C20	C14	C16	H14	240.4	240.0
C16	C14	C20	H20	174.5	174.4
C16	C14	C20	H20A	295.7	294.9
C14	C16	C17	C18	57.5	61.4
C17	C16	C14	H16	239.7	240.0
C17	C16	C14	H16A	120.3	120.0
C14	C16	C17	H17	177.3	181.3
C14	C16	C17	H17A	297.7	301.4
H16	C16	C14	H16A	240.5	240.0
N13	C14	C20	C16	118.9	119.9
N13	C14	C20	H14	238.4	239.9
C20	C14	C16	C17	301.9	298.6
C16	C14	C20	H14	119.5	120.0
C20	C14	C16	H16	62.2	58.6
C20	C14	C16	H16A	181.7	178.6
C18	N19	C20	C14	299.2	306.3
C14	C20	N19	C21	113.1	126.4
N19	C20	C14	H20	240.6	240.3
N19	C20	C14	H20A	119.4	119.8
H20	C20	C14	H20A	238.8	239.5
C17	C16	C14	C20	301.9	298.6
C17	C16	C14	H14	61.6	58.6
C14	C16	C17	H16	120.3	120.0
C14	C16	C17	H16A	239.7	239.9
C16	C17	C18	N19	303.1	305.3
C18	C17	C16	H17	240.2	240.1
C18	C17	C16	H17A	119.8	119.9
C16	C17	C18	H18	62.8	65.2
C16	C17	C18	H18A	183.4	185.6
H16	C16	C17	H16A	119.4	119.9
H17	C17	C16	H17A	239.6	239.9
C18	C17	C16	H16	297.2	301.3
C18	C17	C16	H16A	177.8	181.4
C16	C17	C18	H17	119.8	119.9
C16	C17	C18	H17A	240.2	240.1
C17	C18	N19	C20	62.9	53.7
C17	C18	N19	C21	249.1	233.6
N19	C18	C17	H18	240.3	240.1
N19	C18	C17	H18A	119.7	119.7
H17	C17	C18	H17A	120.4	120.2
H18	C18	C17	H18A	239.4	239.6
C14	C20	N19	C18	299.2	306.3
N19	C18	C17	H17	183.4	185.4
N19	C18	C17	H17A	62.9	65.3
C17	C18	N19	H18	119.7	119.8
C17	C18	N19	H18A	240.3	240.3
C20	N19	C18	C21	173.8	180.0
C18	N19	C20	H20	179.8	186.6
C18	N19	C20	H20A	58.6	66.1
C18	N19	C21	O22	177.8	180.0
C18	N19	C21	C23	355.5	0.0
H18	C18	N19	H18A	120.6	120.5
N19	C20	C14	H14	295.6	294.7
C14	C20	N19	H20	119.4	119.7
C14	C20	N19	H20A	240.6	240.2
C18	N19	C20	C21	186.1	180.0
C20	N19	C18	H18	303.2	293.8
C20	N19	C18	H18A	182.6	173.4
C20	N19	C21	O22	4.3	360.0
C20	N19	C21	C23	181.9	180.0
H20	C20	N19	H20A	121.2	120.5
C18	N19	C21	C20	173.6	180.0
C21	N19	C18	H18	129.4	113.8
C21	N19	C18	H18A	8.8	353.4
C21	N19	C20	H20	353.7	6.6
C21	N19	C20	H20A	232.5	246.2
O22	C21	N19	C23	182.4	180.0
N19	C21	C23	C24	168.7	180.0
N19	C21	C23	H23	289.2	300.0
N19	C21	C23	H23A	48.3	60.0
N19	C21	O22	C23	177.6	180.0
O22	C21	C23	C24	346.4	0.0
O22	C21	C23	H23	106.8	120.0
O22	C21	C23	H23A	226.0	240.0
N19	C21	C23	O22	182.4	180.0
C21	C23	C24	N25	232.4	281.4
C24	C23	C21	H23	239.6	240.0
C24	C23	C21	H23A	120.4	120.0
H23	C23	C21	H23A	240.8	240.0
C21	C23	C24	H23	120.4	120.0
C21	C23	C24	H23A	239.6	240.0
H23	C23	C24	H23A	119.2	120.0
N25	C24	C23	H23	112.0	161.5
N25	C24	C23	H23A	352.8	41.4
C2	C1	H1	C6	180.0	180.2
H1	C1	C2	N3	180.4	179.8
H1	C1	C2	H2	0.3	359.8
H1	C1	C6	C5	179.7	180.3
H1	C1	C6	C7	358.1	0.2
H2	C2	C1	C6	180.3	180.0
C1	C2	H2	N3	180.0	179.9
H2	C2	C1	H1	0.3	359.8
H2	C2	N3	C5	179.7	180.0
H2	C2	N3	HN3	359.7	359.9
C2	N3	HN3	C5	180.0	180.0
HN3	N3	C2	H2	359.7	359.9
HN3	N3	C5	C6	180.1	180.0
HN3	N3	C5	N10	1.2	360.0
H9	C9	C8	N11	1.9	0.0
C8	C9	H9	N10	180.0	180.0
N13	C14	H14	C16	243.6	240.0
N13	C14	H14	C20	122.8	120.1
C16	C14	H14	C20	239.2	240.1
H14	C14	C16	C17	61.6	58.6
H14	C14	C16	H16	181.8	178.6
H14	C14	C16	H16A	301.3	298.6
H14	C14	C20	N19	295.6	294.7
H14	C14	C20	H20	55.0	54.4
H14	C14	C20	H20A	176.2	174.9
H16	C16	C14	C20	62.2	58.6
C14	C16	H16	C17	238.3	240.0
H16	C16	C14	H14	181.8	178.6
C14	C16	H16	H16A	119.2	120.0
H16	C16	C17	C18	297.2	301.3
C17	C16	H16	H16A	240.9	240.1
H16	C16	C17	H17	57.0	61.3
H16	C16	C17	H17A	177.4	181.4
H16A	C16	C14	C20	181.7	178.6
C14	C16	H16A	C17	121.7	120.1
H16A	C16	C14	H14	301.3	298.6
C14	C16	H16A	H16	240.8	240.0
H16A	C16	C17	C18	177.8	181.4
C17	C16	H16A	H16	119.1	119.9
H16A	C16	C17	H17	297.6	301.3
H16A	C16	C17	H17A	57.9	61.5
C16	C17	H17	C18	241.2	240.2
H17	C17	C16	H16	57.0	61.3
H17	C17	C16	H16A	297.6	301.3
C16	C17	H17	H17A	120.6	120.1
H17	C17	C18	N19	183.4	185.4
C18	C17	H17	H17A	239.4	239.9
H17	C17	C18	H18	303.1	305.3
H17	C17	C18	H18A	63.6	65.7
C16	C17	H17A	C18	118.8	119.8
H17A	C17	C16	H16	177.4	181.4
H17A	C17	C16	H16A	57.9	61.5
C16	C17	H17A	H17	239.4	239.9
H17A	C17	C18	N19	62.9	65.3
C18	C17	H17A	H17	120.6	120.1
H17A	C17	C18	H18	182.6	185.1
H17A	C17	C18	H18A	303.2	305.5
C17	C18	H18	N19	241.6	240.7
H18	C18	C17	H17	303.1	305.3
H18	C18	C17	H17A	182.6	185.1
C17	C18	H18	H18A	120.8	120.3
H18	C18	N19	C20	303.2	293.8
H18	C18	N19	C21	129.4	113.8
N19	C18	H18	H18A	239.2	239.7
C17	C18	H18A	N19	118.4	119.2
H18A	C18	C17	H17	63.6	65.7
H18A	C18	C17	H17A	303.2	305.5
C17	C18	H18A	H18	239.2	239.6
H18A	C18	N19	C20	182.6	173.4
H18A	C18	N19	C21	8.8	353.4
N19	C18	H18A	H18	120.8	120.4
C14	C20	H20	N19	243.6	240.8
H20	C20	C14	H14	55.0	54.4
C14	C20	H20	H20A	121.8	120.4
H20	C20	N19	C21	353.7	6.6
N19	C20	H20	H20A	238.2	239.7
C14	C20	H20A	N19	116.4	119.3
H20A	C20	C14	H14	176.2	174.9
C14	C20	H20A	H20	238.2	239.6
H20A	C20	N19	C21	232.5	246.2
N19	C20	H20A	H20	121.8	120.3
C21	C23	H23	C24	237.5	240.0
C21	C23	H23	H23A	118.7	120.0
H23	C23	C24	N25	112.0	161.5
C24	C23	H23	H23A	241.2	239.9
C21	C23	H23A	C24	122.5	120.0
C21	C23	H23A	H23	241.2	240.1
H23A	C23	C24	N25	352.8	41.4
C24	C23	H23A	H23	118.8	120.0