PDB Chemical Component C5B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C5B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.485 |
1.454 |
| N |
HN1 |
1.000 |
0.999 |
| N |
HN2 |
1.000 |
1.000 |
| CA |
C |
1.531 |
1.507 |
| CA |
CB1 |
1.519 |
1.530 |
| CA |
CB2 |
1.526 |
1.525 |
| C |
O |
1.249 |
1.222 |
| C |
OXT |
1.245 |
1.355 |
| OXT |
HOXT |
0.949 |
0.981 |
| CB1 |
CD |
1.518 |
1.537 |
| CB1 |
HB11 |
1.100 |
1.097 |
| CB1 |
HB12 |
1.100 |
1.098 |
| CB2 |
CG2 |
1.533 |
1.526 |
| CB2 |
HB21 |
1.100 |
1.098 |
| CB2 |
HB22 |
1.100 |
1.095 |
| CG2 |
CD |
1.522 |
1.532 |
| CG2 |
HG21 |
1.100 |
1.097 |
| CG2 |
HG22 |
1.100 |
1.095 |
| CD |
CE |
1.518 |
1.498 |
| CD |
HD |
1.100 |
1.096 |
| CE |
OZ1 |
1.251 |
1.222 |
| CE |
OZ2 |
1.250 |
1.355 |
| OZ2 |
HOZ2 |
0.950 |
0.981 |
Bond Angles for C5B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
HN1 |
109.5 |
118.3 |
| CA |
N |
HN2 |
109.5 |
118.3 |
| N |
CA |
C |
113.6 |
106.1 |
| N |
CA |
CB1 |
105.7 |
112.5 |
| N |
CA |
CB2 |
106.3 |
112.4 |
| HN1 |
N |
HN2 |
109.4 |
121.9 |
| C |
CA |
CB1 |
111.7 |
111.2 |
| C |
CA |
CB2 |
110.7 |
111.2 |
| CA |
C |
O |
119.7 |
125.1 |
| CA |
C |
OXT |
119.4 |
110.7 |
| CB1 |
CA |
CB2 |
108.5 |
103.7 |
| CA |
CB1 |
CD |
103.9 |
105.3 |
| CA |
CB1 |
HB11 |
111.4 |
112.1 |
| CA |
CB1 |
HB12 |
112.5 |
111.0 |
| CA |
CB2 |
CG2 |
105.2 |
103.4 |
| CA |
CB2 |
HB21 |
110.9 |
111.0 |
| CA |
CB2 |
HB22 |
111.9 |
113.5 |
| O |
C |
OXT |
120.9 |
124.2 |
| C |
OXT |
HOXT |
109.5 |
111.9 |
| CD |
CB1 |
HB11 |
111.4 |
110.7 |
| CD |
CB1 |
HB12 |
112.6 |
110.7 |
| CB1 |
CD |
CG2 |
105.0 |
106.7 |
| CB1 |
CD |
CE |
110.5 |
110.3 |
| CB1 |
CD |
HD |
112.5 |
111.3 |
| HB11 |
CB1 |
HB12 |
105.3 |
107.1 |
| CG2 |
CB2 |
HB21 |
110.9 |
109.4 |
| CG2 |
CB2 |
HB22 |
111.8 |
111.3 |
| CB2 |
CG2 |
CD |
104.3 |
105.2 |
| CB2 |
CG2 |
HG21 |
111.3 |
109.6 |
| CB2 |
CG2 |
HG22 |
112.4 |
111.4 |
| HB21 |
CB2 |
HB22 |
106.2 |
108.1 |
| CD |
CG2 |
HG21 |
111.3 |
109.5 |
| CD |
CG2 |
HG22 |
112.3 |
113.6 |
| CG2 |
CD |
CE |
111.5 |
110.7 |
| CG2 |
CD |
HD |
111.5 |
110.7 |
| HG21 |
CG2 |
HG22 |
105.5 |
107.5 |
| CE |
CD |
HD |
106.0 |
107.2 |
| CD |
CE |
OZ1 |
119.1 |
125.0 |
| CD |
CE |
OZ2 |
119.5 |
110.7 |
| OZ1 |
CE |
OZ2 |
121.4 |
124.3 |
| CE |
OZ2 |
HOZ2 |
109.5 |
111.9 |
Torsion Angles for C5B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN1 |
N |
CA |
HN2 |
240.0 |
166.7 |
| C |
CA |
N |
CB1 |
122.8 |
121.7 |
| C |
CA |
N |
CB2 |
238.0 |
238.3 |
| N |
CA |
C |
O |
342.7 |
242.5 |
| N |
CA |
C |
OXT |
163.1 |
62.7 |
| CB1 |
CA |
N |
CB2 |
115.2 |
116.6 |
| N |
CA |
CB1 |
CD |
228.1 |
207.1 |
| N |
CA |
CB1 |
HB11 |
348.1 |
86.6 |
| N |
CA |
CB1 |
HB12 |
106.1 |
326.9 |
| N |
CA |
CB2 |
CG2 |
109.3 |
161.9 |
| N |
CA |
CB2 |
HB21 |
229.3 |
44.6 |
| N |
CA |
CB2 |
HB22 |
347.7 |
282.6 |
| CA |
N |
HN1 |
HN2 |
120.0 |
193.8 |
| HN1 |
N |
CA |
C |
206.1 |
210.1 |
| HN1 |
N |
CA |
CB1 |
83.3 |
88.4 |
| HN1 |
N |
CA |
CB2 |
328.1 |
331.8 |
| CA |
N |
HN2 |
HN1 |
240.0 |
166.2 |
| HN2 |
N |
CA |
C |
326.1 |
43.4 |
| HN2 |
N |
CA |
CB1 |
203.3 |
281.7 |
| HN2 |
N |
CA |
CB2 |
88.1 |
165.2 |
| C |
CA |
N |
HN1 |
206.1 |
210.1 |
| C |
CA |
N |
HN2 |
326.1 |
43.4 |
| N |
CA |
C |
CB1 |
240.5 |
237.5 |
| N |
CA |
C |
CB2 |
119.6 |
122.5 |
| CB1 |
CA |
C |
CB2 |
239.0 |
245.1 |
| C |
CA |
CB1 |
CD |
104.1 |
88.3 |
| C |
CA |
CB1 |
HB11 |
224.1 |
327.9 |
| C |
CA |
CB1 |
HB12 |
342.0 |
208.1 |
| C |
CA |
CB2 |
CG2 |
233.2 |
280.6 |
| C |
CA |
CB2 |
HB21 |
353.2 |
163.4 |
| C |
CA |
CB2 |
HB22 |
111.6 |
41.4 |
| O |
C |
CA |
OXT |
179.6 |
179.9 |
| CA |
C |
OXT |
HOXT |
179.6 |
179.9 |
| CB1 |
CA |
N |
HN1 |
83.3 |
88.4 |
| CB1 |
CA |
N |
HN2 |
203.3 |
281.7 |
| N |
CA |
CB1 |
C |
124.1 |
118.8 |
| N |
CA |
CB1 |
CB2 |
246.3 |
238.3 |
| C |
CA |
CB1 |
CB2 |
122.2 |
119.5 |
| CB1 |
CA |
C |
O |
102.2 |
5.1 |
| CB1 |
CA |
C |
OXT |
282.6 |
185.2 |
| CB1 |
CA |
CB2 |
CG2 |
356.0 |
40.1 |
| CB1 |
CA |
CB2 |
HB21 |
116.0 |
282.9 |
| CB1 |
CA |
CB2 |
HB22 |
234.4 |
160.9 |
| CD |
CB1 |
CA |
HB11 |
240.0 |
120.4 |
| CD |
CB1 |
CA |
HB12 |
122.1 |
240.2 |
| CA |
CB1 |
CD |
CG2 |
33.6 |
10.5 |
| CA |
CB1 |
CD |
CE |
154.0 |
130.8 |
| CA |
CB1 |
CD |
HD |
272.2 |
249.7 |
| HB11 |
CB1 |
CA |
HB12 |
242.1 |
119.7 |
| CB2 |
CA |
N |
HN1 |
328.1 |
331.8 |
| CB2 |
CA |
N |
HN2 |
88.1 |
165.2 |
| N |
CA |
CB2 |
C |
236.1 |
241.2 |
| N |
CA |
CB2 |
CB1 |
113.3 |
121.7 |
| C |
CA |
CB2 |
CB1 |
237.2 |
240.5 |
| CB2 |
CA |
C |
O |
223.1 |
120.0 |
| CB2 |
CA |
C |
OXT |
43.6 |
300.1 |
| CB2 |
CA |
CB1 |
CD |
341.8 |
328.8 |
| CB2 |
CA |
CB1 |
HB11 |
101.8 |
208.3 |
| CB2 |
CA |
CB1 |
HB12 |
219.8 |
88.6 |
| CG2 |
CB2 |
CA |
HB21 |
240.0 |
117.3 |
| CG2 |
CB2 |
CA |
HB22 |
121.6 |
239.2 |
| CA |
CB2 |
CG2 |
CD |
24.6 |
326.4 |
| CA |
CB2 |
CG2 |
HG21 |
144.6 |
84.0 |
| CA |
CB2 |
CG2 |
HG22 |
262.6 |
202.8 |
| HB21 |
CB2 |
CA |
HB22 |
241.6 |
122.0 |
| O |
C |
CA |
CB1 |
102.2 |
5.1 |
| O |
C |
CA |
CB2 |
223.1 |
120.0 |
| CA |
C |
O |
OXT |
180.4 |
180.1 |
| O |
C |
OXT |
HOXT |
360.0 |
0.0 |
| OXT |
C |
CA |
CB1 |
282.6 |
185.2 |
| OXT |
C |
CA |
CB2 |
43.6 |
300.1 |
| CA |
C |
OXT |
O |
179.6 |
179.9 |
| CD |
CB1 |
CA |
CB2 |
341.8 |
328.8 |
| CA |
CB1 |
CD |
HB11 |
120.0 |
238.6 |
| CA |
CB1 |
CD |
HB12 |
238.0 |
120.0 |
| HB11 |
CB1 |
CD |
HB12 |
118.0 |
241.4 |
| CB2 |
CG2 |
CD |
CB1 |
323.6 |
14.3 |
| CB1 |
CD |
CG2 |
HG21 |
203.5 |
256.6 |
| CB1 |
CD |
CG2 |
HG22 |
85.5 |
136.4 |
| CG2 |
CD |
CB1 |
CE |
239.7 |
239.7 |
| CG2 |
CD |
CB1 |
HD |
121.4 |
120.8 |
| CE |
CD |
CB1 |
HD |
241.7 |
241.1 |
| CB1 |
CD |
CE |
OZ1 |
135.7 |
271.4 |
| CB1 |
CD |
CE |
OZ2 |
315.9 |
91.5 |
| HB11 |
CB1 |
CA |
CB2 |
101.8 |
208.3 |
| CA |
CB1 |
HB11 |
CD |
244.5 |
117.2 |
| CA |
CB1 |
HB11 |
HB12 |
122.2 |
238.0 |
| CD |
CB1 |
HB11 |
HB12 |
237.7 |
120.8 |
| HB11 |
CB1 |
CD |
CG2 |
273.6 |
131.9 |
| HB11 |
CB1 |
CD |
CE |
34.0 |
252.2 |
| HB11 |
CB1 |
CD |
HD |
152.2 |
11.1 |
| HB12 |
CB1 |
CA |
CB2 |
219.8 |
88.6 |
| CA |
CB1 |
HB12 |
CD |
117.0 |
243.5 |
| CA |
CB1 |
HB12 |
HB11 |
238.5 |
122.7 |
| CD |
CB1 |
HB12 |
HB11 |
121.5 |
239.2 |
| HB12 |
CB1 |
CD |
CG2 |
155.7 |
250.5 |
| HB12 |
CB1 |
CD |
CE |
276.0 |
10.8 |
| HB12 |
CB1 |
CD |
HD |
34.3 |
129.6 |
| CA |
CB2 |
CG2 |
HB21 |
120.0 |
241.6 |
| CA |
CB2 |
CG2 |
HB22 |
238.4 |
122.2 |
| CB1 |
CD |
CG2 |
CB2 |
323.6 |
14.3 |
| HB21 |
CB2 |
CG2 |
HB22 |
118.4 |
240.6 |
| CD |
CG2 |
CB2 |
HG21 |
240.0 |
242.4 |
| CD |
CG2 |
CB2 |
HG22 |
121.9 |
123.6 |
| CB2 |
CG2 |
CD |
CE |
203.9 |
254.3 |
| CB2 |
CG2 |
CD |
HD |
85.6 |
135.5 |
| HG21 |
CG2 |
CB2 |
HG22 |
242.0 |
241.2 |
| CA |
CB2 |
HB21 |
CG2 |
243.5 |
113.5 |
| CA |
CB2 |
HB21 |
HB22 |
121.8 |
234.9 |
| CG2 |
CB2 |
HB21 |
HB22 |
238.3 |
121.4 |
| HB21 |
CB2 |
CG2 |
CD |
264.6 |
84.8 |
| HB21 |
CB2 |
CG2 |
HG21 |
24.6 |
202.4 |
| HB21 |
CB2 |
CG2 |
HG22 |
142.6 |
321.2 |
| CA |
CB2 |
HB22 |
CG2 |
117.7 |
243.8 |
| CA |
CB2 |
HB22 |
HB21 |
238.9 |
123.6 |
| CG2 |
CB2 |
HB22 |
HB21 |
121.2 |
239.8 |
| HB22 |
CB2 |
CG2 |
CD |
146.2 |
204.2 |
| HB22 |
CB2 |
CG2 |
HG21 |
266.2 |
321.8 |
| HB22 |
CB2 |
CG2 |
HG22 |
24.3 |
80.6 |
| CG2 |
CD |
CB1 |
HB11 |
273.6 |
131.9 |
| CG2 |
CD |
CB1 |
HB12 |
155.7 |
250.5 |
| CB1 |
CD |
CG2 |
CE |
119.7 |
120.0 |
| CB1 |
CD |
CG2 |
HD |
238.0 |
238.7 |
| CD |
CG2 |
CB2 |
HB21 |
264.6 |
84.8 |
| CD |
CG2 |
CB2 |
HB22 |
146.2 |
204.2 |
| CB2 |
CG2 |
CD |
HG21 |
120.0 |
117.7 |
| CB2 |
CG2 |
CD |
HG22 |
238.0 |
237.8 |
| HG21 |
CG2 |
CD |
HG22 |
118.0 |
120.1 |
| CE |
CD |
CG2 |
HD |
118.3 |
118.7 |
| CG2 |
CD |
CE |
OZ1 |
252.0 |
29.2 |
| CG2 |
CD |
CE |
OZ2 |
72.3 |
209.3 |
| HG21 |
CG2 |
CB2 |
HB21 |
24.6 |
202.4 |
| HG21 |
CG2 |
CB2 |
HB22 |
266.2 |
321.8 |
| CB2 |
CG2 |
HG21 |
CD |
244.2 |
245.1 |
| CB2 |
CG2 |
HG21 |
HG22 |
122.1 |
121.2 |
| CD |
CG2 |
HG21 |
HG22 |
237.9 |
236.2 |
| HG21 |
CG2 |
CD |
CE |
83.9 |
136.6 |
| HG21 |
CG2 |
CD |
HD |
325.6 |
17.8 |
| HG22 |
CG2 |
CB2 |
HB21 |
142.6 |
321.2 |
| HG22 |
CG2 |
CB2 |
HB22 |
24.3 |
80.6 |
| CB2 |
CG2 |
HG22 |
CD |
117.2 |
118.7 |
| CB2 |
CG2 |
HG22 |
HG21 |
238.6 |
239.9 |
| CD |
CG2 |
HG22 |
HG21 |
121.4 |
121.3 |
| HG22 |
CG2 |
CD |
CE |
325.8 |
16.4 |
| HG22 |
CG2 |
CD |
HD |
207.5 |
257.7 |
| CE |
CD |
CB1 |
HB11 |
34.0 |
252.2 |
| CE |
CD |
CB1 |
HB12 |
276.0 |
10.8 |
| CB1 |
CD |
CE |
CG2 |
243.6 |
242.2 |
| CB1 |
CD |
CE |
HD |
122.1 |
121.4 |
| CE |
CD |
CG2 |
HG21 |
83.9 |
136.6 |
| CE |
CD |
CG2 |
HG22 |
325.8 |
16.4 |
| CG2 |
CD |
CE |
HD |
238.5 |
239.2 |
| OZ1 |
CE |
CD |
OZ2 |
179.7 |
179.9 |
| CD |
CE |
OZ2 |
HOZ2 |
179.7 |
179.8 |
| HD |
CD |
CB1 |
HB11 |
152.2 |
11.1 |
| HD |
CD |
CB1 |
HB12 |
34.3 |
129.6 |
| CB1 |
CD |
HD |
CG2 |
117.6 |
118.4 |
| CB1 |
CD |
HD |
CE |
239.1 |
239.3 |
| HD |
CD |
CG2 |
HG21 |
325.6 |
17.8 |
| HD |
CD |
CG2 |
HG22 |
207.5 |
257.7 |
| CG2 |
CD |
HD |
CE |
121.5 |
120.9 |
| HD |
CD |
CE |
OZ1 |
13.5 |
150.0 |
| HD |
CD |
CE |
OZ2 |
193.8 |
330.1 |
| OZ1 |
CE |
CD |
HD |
13.5 |
150.0 |
| CD |
CE |
OZ1 |
OZ2 |
180.3 |
180.2 |
| OZ1 |
CE |
OZ2 |
HOZ2 |
0.0 |
360.0 |
| OZ2 |
CE |
CD |
HD |
193.8 |
330.1 |
| CD |
CE |
OZ2 |
OZ1 |
179.7 |
179.9 |