PDB Chemical Component C58

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C58

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C N 1.470 1.469
C C1 1.566 1.530
C C17 1.545 1.530
C H 1.100 1.090
N HN 1.000 1.009
N HNA 1.000 1.009
S C4 1.741 1.756
S C7 1.744 1.755
C1 N1 1.456 1.465
C1 H1 1.100 1.090
C1 H1A 1.100 1.090
N1 C2 1.340 1.383
N1 HN1 1.000 0.971
C2 N2 1.343 1.323
C2 C5 1.429 1.421
N2 C3 1.338 1.328
C3 N3 1.340 1.321
C3 C12 1.486 1.484
N3 C4 1.331 1.338
C4 C5 1.395 1.395
N4 C14 1.334 1.319
N4 C15 1.335 1.318
C5 C6 1.462 1.457
C6 C7 1.351 1.335
C6 C11 1.499 1.524
C7 C8 1.498 1.519
C8 C9 1.517 1.530
C8 H8 1.100 1.090
C8 H8A 1.100 1.090
C9 C10 1.513 1.532
C9 H9 1.100 1.090
C9 H9A 1.100 1.091
C10 C11 1.520 1.529
C10 H10 1.100 1.089
C10 H10A 1.100 1.090
C11 H11 1.100 1.090
C11 H11A 1.100 1.089
C12 C13 1.389 1.397
C12 C16 1.389 1.399
C13 C14 1.382 1.381
C13 H13 1.080 1.080
C14 H14 1.080 1.080
C15 C16 1.380 1.380
C15 H15 1.080 1.080
C16 H16 1.080 1.079
C17 C18 1.508 1.507
C17 H17 1.100 1.090
C17 H17A 1.100 1.090
C18 C19 1.386 1.382
C18 C23 1.385 1.382
C19 C20 1.384 1.382
C19 H19 1.080 1.080
C20 C21 1.376 1.382
C20 H20 1.080 1.079
C21 C22 1.376 1.383
C21 H21 1.080 1.081
C22 C23 1.384 1.383
C22 H22 1.080 1.080
C23 H23 1.080 1.080

Bond Angles for C58

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N C C1 109.6 109.5
N C C17 112.6 109.5
N C H 109.6 109.5
C N HN 109.5 111.0
C N HNA 109.4 111.0
C1 C C17 108.0 109.5
C1 C H 108.4 109.5
C C1 N1 111.5 109.5
C C1 H1 108.9 109.5
C C1 H1A 109.0 109.5
C17 C H 108.6 109.4
C C17 C18 111.4 109.5
C C17 H17 109.0 109.4
C C17 H17A 109.0 109.4
HN N HNA 109.5 111.1
C4 S C7 90.6 92.5
S C4 N3 121.0 131.2
S C4 C5 112.2 109.6
S C7 C6 113.7 111.4
S C7 C8 120.3 124.3
N1 C1 H1 109.0 109.5
N1 C1 H1A 108.9 109.5
C1 N1 C2 121.3 120.0
C1 N1 HN1 106.5 120.0
H1 C1 H1A 109.5 109.4
C2 N1 HN1 106.4 120.0
N1 C2 N2 118.5 120.5
N1 C2 C5 122.0 120.5
N2 C2 C5 119.4 119.0
C2 N2 C3 119.7 121.1
C2 C5 C4 114.3 117.8
C2 C5 C6 134.2 129.6
N2 C3 N3 125.9 122.0
N2 C3 C12 117.0 119.0
N3 C3 C12 117.1 118.9
C3 N3 C4 113.9 120.9
C3 C12 C13 121.2 120.9
C3 C12 C16 121.3 120.9
N3 C4 C5 126.8 119.3
C4 C5 C6 111.4 112.7
C14 N4 C15 116.7 122.0
N4 C14 C13 123.8 120.8
N4 C14 H14 118.1 119.6
N4 C15 C16 123.7 120.9
N4 C15 H15 118.2 119.5
C5 C6 C7 112.0 113.9
C5 C6 C11 126.5 122.7
C7 C6 C11 121.5 123.4
C6 C7 C8 126.0 124.3
C6 C11 C10 110.8 108.9
C6 C11 H11 109.1 109.5
C6 C11 H11A 109.2 109.6
C7 C8 C9 110.1 108.8
C7 C8 H8 109.3 109.7
C7 C8 H8A 109.3 109.6
C9 C8 H8 109.3 109.6
C9 C8 H8A 109.3 109.5
C8 C9 C10 111.2 108.9
C8 C9 H9 109.1 109.6
C8 C9 H9A 109.0 109.6
H8 C8 H8A 109.5 109.7
C10 C9 H9 109.0 109.6
C10 C9 H9A 109.0 109.6
C9 C10 C11 112.4 109.1
C9 C10 H10 108.8 109.6
C9 C10 H10A 108.7 109.5
H9 C9 H9A 109.5 109.6
C11 C10 H10 108.7 109.5
C11 C10 H10A 108.7 109.5
C10 C11 H11 109.1 109.6
C10 C11 H11A 109.1 109.6
H10 C10 H10A 109.5 109.6
H11 C11 H11A 109.5 109.7
C13 C12 C16 117.5 118.2
C12 C13 C14 119.1 119.0
C12 C13 H13 120.4 120.5
C12 C16 C15 119.2 119.0
C12 C16 H16 120.4 120.5
C14 C13 H13 120.4 120.4
C13 C14 H14 118.1 119.5
C16 C15 H15 118.1 119.5
C15 C16 H16 120.4 120.5
C18 C17 H17 109.0 109.5
C18 C17 H17A 109.0 109.5
C17 C18 C19 120.8 120.0
C17 C18 C23 120.9 120.0
H17 C17 H17A 109.5 109.5
C19 C18 C23 118.3 120.0
C18 C19 C20 120.9 120.0
C18 C19 H19 119.6 120.0
C18 C23 C22 120.8 120.0
C18 C23 H23 119.6 120.1
C20 C19 H19 119.6 120.0
C19 C20 C21 120.1 120.0
C19 C20 H20 119.9 120.0
C21 C20 H20 119.9 120.0
C20 C21 C22 119.7 120.0
C20 C21 H21 120.2 120.0
C22 C21 H21 120.1 120.0
C21 C22 C23 120.2 120.0
C21 C22 H22 119.9 120.0
C23 C22 H22 119.9 120.0
C22 C23 H23 119.6 119.9

Torsion Angles for C58

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1 C N C17 120.2 120.0
C1 C N H 241.2 240.0
N C C1 N1 51.3 55.0
N C C1 H1 171.6 175.0
N C C1 H1A 291.0 295.0
C17 C N H 121.0 120.0
N C C17 C18 183.6 295.0
N C C17 H17 303.9 55.0
N C C17 H17A 63.4 175.0
HN N C HNA 240.0 236.0
N C C1 C17 237.0 240.0
N C C1 H 119.6 120.0
C1 C N HN 180.0 296.0
C1 C N HNA 300.0 60.1
C17 C C1 H 242.5 240.0
C1 C C17 C18 62.5 175.0
C1 C C17 H17 182.8 295.0
C1 C C17 H17A 302.2 54.9
N1 C1 C H1 239.7 240.0
N1 C1 C H1A 120.3 120.0
C C1 N1 C2 71.8 180.0
C C1 N1 HN1 193.4 360.0
H1 C1 C H1A 240.6 240.0
N C C17 C1 121.1 120.0
N C C17 H 238.4 240.0
C17 C N HN 59.8 176.0
C17 C N HNA 179.8 300.1
C1 C C17 H 117.3 120.0
C17 C C1 N1 174.3 175.0
C17 C C1 H1 294.6 295.0
C17 C C1 H1A 54.0 55.0
C18 C17 C H17 239.7 240.0
C18 C17 C H17A 120.3 120.0
C C17 C18 C19 93.7 90.0
C C17 C18 C23 273.6 269.7
H17 C17 C H17A 240.6 240.1
N C H C1 240.4 240.0
N C H C17 123.4 120.0
H C N HN 298.8 56.1
H C N HNA 58.8 180.1
C1 C H C17 243.0 240.0
H C C1 N1 291.7 295.0
H C C1 H1 52.0 55.0
H C C1 H1A 171.4 175.0
H C C17 C18 305.2 55.0
H C C17 H17 65.5 175.0
H C C17 H17A 184.9 295.0
HN N C C1 180.0 296.0
HN N C C17 59.8 176.0
HN N C H 298.8 56.1
C N HN HNA 120.0 124.0
HNA N C C1 300.0 60.1
HNA N C C17 179.8 300.1
HNA N C H 58.8 180.1
C N HNA HN 240.0 236.0
C4 S C7 C6 360.0 0.1
C4 S C7 C8 179.6 180.0
C2 C5 C4 S 180.7 180.1
C3 N3 C4 S 181.2 180.0
N3 C4 S C5 179.1 179.9
S C4 C5 C6 1.0 0.0
C7 S C4 N3 178.5 179.9
C7 S C4 C5 359.4 359.9
C5 C6 C7 S 0.6 360.0
S C7 C6 C11 182.5 180.0
C6 C7 S C8 180.3 180.1
S C7 C8 C9 164.5 163.3
S C7 C8 H8 284.7 283.1
S C7 C8 H8A 44.5 43.5
N1 C1 C C17 174.3 175.0
N1 C1 C H 291.7 295.0
C C1 N1 H1 120.3 120.0
C C1 N1 H1A 239.7 240.0
H1 C1 N1 H1A 119.4 120.0
C2 N1 C1 HN1 238.4 180.1
C1 N1 C2 N2 3.5 5.5
C1 N1 C2 C5 185.5 185.5
H1 C1 C C17 294.6 295.0
H1 C1 C H 52.0 55.0
C C1 H1 N1 238.1 240.0
C C1 H1 H1A 119.1 120.0
N1 C1 H1 H1A 240.9 240.0
H1 C1 N1 C2 311.5 60.0
H1 C1 N1 HN1 73.1 239.9
H1A C1 C C17 54.0 55.0
H1A C1 C H 171.4 175.0
C C1 H1A N1 121.9 120.0
C C1 H1A H1 241.0 239.9
N1 C1 H1A H1 119.1 120.0
H1A C1 N1 C2 192.1 300.1
H1A C1 N1 HN1 313.7 120.0
C2 N1 C1 H1 311.5 60.0
C2 N1 C1 H1A 192.1 300.1
C1 N1 C2 HN1 121.7 179.9
N2 C2 N1 C5 178.0 180.0
N1 C2 N2 C3 182.2 180.1
N1 C2 C5 C4 176.1 179.9
N1 C2 C5 C6 355.8 359.9
HN1 N1 C1 H1 73.1 239.9
HN1 N1 C1 H1A 313.7 120.0
C1 N1 HN1 C2 229.4 180.1
HN1 N1 C2 N2 241.9 185.6
HN1 N1 C2 C5 63.9 5.6
N2 C2 N1 HN1 241.9 185.6
N1 C2 N2 C5 182.0 180.0
N2 C2 C5 C4 358.2 359.9
N2 C2 C5 C6 177.8 179.9
C2 N2 C3 N3 2.0 0.0
C2 N2 C3 C12 185.4 180.0
S C4 C5 C2 180.7 180.1
C5 C2 N1 HN1 63.9 5.6
N1 C2 C5 N2 178.0 180.0
C5 C2 N2 C3 0.2 0.1
N3 C4 C5 C2 1.7 0.1
C4 C5 C2 C6 180.3 180.0
C2 C5 C6 C7 179.3 180.0
C2 C5 C6 C11 357.4 359.9
C3 N2 C2 C5 0.2 0.1
N3 C3 N2 C12 176.6 180.0
N2 C3 N3 C4 357.9 360.0
N2 C3 C12 C13 359.8 180.0
N2 C3 C12 C16 177.5 360.0
S C4 N3 C3 181.2 180.0
N2 C3 N3 C12 183.4 180.0
N3 C3 C12 C13 182.9 360.0
N3 C3 C12 C16 0.5 180.0
C3 N3 C4 C5 0.1 359.9
N2 C3 C12 N3 176.9 180.0
C12 C3 N3 C4 174.5 180.0
C13 C12 C3 C16 182.3 180.0
C3 C12 C13 C14 177.4 180.0
C3 C12 C13 H13 357.4 360.0
C3 C12 C16 C15 182.7 180.0
C3 C12 C16 H16 2.8 0.0
N3 C4 S C7 178.5 179.9
S C4 N3 C5 181.0 180.1
C2 C5 C4 N3 1.7 0.1
C4 N3 C3 C12 174.5 180.0
N3 C4 C5 C6 182.0 180.1
C5 C4 S C7 359.4 359.9
S C4 C5 N3 179.0 179.9
C2 C5 C4 C6 179.7 180.0
C4 C5 C6 C7 359.0 0.0
C4 C5 C6 C11 177.0 179.9
C14 N4 C15 C16 359.9 359.9
C14 N4 C15 H15 180.0 179.9
C12 C13 C14 N4 0.1 360.0
N4 C14 C13 H13 180.1 180.0
C13 C14 N4 H14 180.0 180.1
C15 N4 C14 C13 0.2 0.1
C15 N4 C14 H14 180.1 180.0
C12 C16 C15 N4 359.7 0.0
C16 C15 N4 H15 180.0 180.0
N4 C15 C16 H16 179.7 180.0
S C7 C6 C5 0.6 360.0
C2 C5 C6 C4 180.3 180.0
C7 C6 C5 C11 182.0 180.1
C5 C6 C7 C8 181.0 180.0
C5 C6 C11 C10 164.3 162.9
C5 C6 C11 H11 284.5 282.7
C5 C6 C11 H11A 44.1 43.0
S C7 C6 C8 179.7 179.9
C5 C6 C7 C11 178.2 179.9
C7 C6 C11 C10 342.2 342.8
C7 C6 C11 H11 102.4 102.6
C7 C6 C11 H11A 222.0 222.9
C6 C7 C8 C9 344.2 343.2
C6 C7 C8 H8 104.3 103.0
C6 C7 C8 H8A 224.1 223.4
C5 C6 C11 C7 182.1 180.1
C11 C6 C7 C8 2.8 0.1
C9 C10 C11 C6 46.8 50.7
C6 C11 C10 H10 286.3 290.8
C6 C11 C10 H10A 167.2 170.6
C10 C11 C6 H11 239.8 240.2
C10 C11 C6 H11A 120.2 119.9
H11 C11 C6 H11A 240.4 239.7
S C7 C8 C6 180.4 180.1
C8 C7 C6 C11 2.8 0.1
C9 C8 C7 H8 239.9 240.2
C9 C8 C7 H8A 120.1 119.7
C7 C8 C9 C10 43.7 50.2
C7 C8 C9 H9 164.0 170.0
C7 C8 C9 H9A 283.5 290.3
H8 C8 C7 H8A 240.2 239.5
C7 C8 C9 H8 120.1 119.9
C7 C8 C9 H8A 239.9 240.3
H8 C8 C9 H8A 119.8 120.4
C10 C9 C8 H9 239.7 240.2
C10 C9 C8 H9A 120.3 119.8
C8 C9 C10 C11 297.9 289.6
C8 C9 C10 H10 58.3 49.5
C8 C9 C10 H10A 177.5 169.7
H9 C9 C8 H9A 240.5 239.7
C7 C8 H8 C9 239.4 240.6
C7 C8 H8 H8A 119.7 120.4
C9 C8 H8 H8A 240.3 239.7
H8 C8 C9 C10 283.6 290.3
H8 C8 C9 H9 43.9 50.1
H8 C8 C9 H9A 163.4 170.4
C7 C8 H8A C9 120.6 119.3
C7 C8 H8A H8 240.3 239.6
C9 C8 H8A H8 119.7 120.3
H8A C8 C9 C10 163.8 169.9
H8A C8 C9 H9 284.1 289.7
H8A C8 C9 H9A 43.5 50.1
C6 C11 C10 C9 46.8 50.7
C10 C9 C8 H8 283.6 290.3
C10 C9 C8 H8A 163.8 169.9
C8 C9 C10 H9 120.3 119.9
C8 C9 C10 H9A 239.7 240.2
H9 C9 C10 H9A 119.5 120.3
C11 C10 C9 H10 239.6 240.1
C11 C10 C9 H10A 120.4 119.9
C9 C10 C11 H11 286.6 291.0
C9 C10 C11 H11A 167.0 170.6
H10 C10 C9 H10A 240.9 239.7
H9 C9 C8 H8 43.9 50.1
H9 C9 C8 H8A 284.1 289.7
C8 C9 H9 C10 238.4 240.6
C8 C9 H9 H9A 119.2 120.3
C10 C9 H9 H9A 240.8 239.7
H9 C9 C10 C11 177.6 169.7
H9 C9 C10 H10 298.0 289.6
H9 C9 C10 H10A 57.2 49.9
H9A C9 C8 H8 163.4 170.4
H9A C9 C8 H8A 43.5 50.1
C8 C9 H9A C10 121.6 119.4
C8 C9 H9A H9 240.8 239.7
C10 C9 H9A H9 119.2 120.3
H9A C9 C10 C11 58.2 49.4
H9A C9 C10 H10 178.6 169.3
H9A C9 C10 H10A 297.7 289.6
C6 C11 C10 H11 120.2 119.7
C6 C11 C10 H11A 239.8 240.2
C11 C10 C9 H9 177.6 169.7
C11 C10 C9 H9A 58.2 49.4
C9 C10 C11 H10 120.5 119.9
C9 C10 C11 H10A 239.6 240.1
H10 C10 C11 H10A 119.1 120.2
H11 C11 C10 H11A 119.6 120.4
H10 C10 C9 H9 298.0 289.6
H10 C10 C9 H9A 178.6 169.3
C9 C10 H10 C11 237.3 240.4
C9 C10 H10 H10A 118.7 120.2
C11 C10 H10 H10A 241.3 239.9
H10 C10 C11 H11 166.2 171.1
H10 C10 C11 H11A 46.6 50.6
H10A C10 C9 H9 57.2 49.9
H10A C10 C9 H9A 297.7 289.6
C9 C10 H10A C11 122.7 119.6
C9 C10 H10A H10 241.3 239.8
C11 C10 H10A H10 118.6 120.1
H10A C10 C11 H11 47.0 50.9
H10A C10 C11 H11A 287.4 290.4
C6 C11 H11 C10 238.8 240.7
C6 C11 H11 H11A 119.4 120.3
H11 C11 C10 H10 166.2 171.1
H11 C11 C10 H10A 47.0 50.9
C10 C11 H11 H11A 240.6 239.6
C6 C11 H11A C10 121.2 119.4
C6 C11 H11A H11 240.6 239.8
H11A C11 C10 H10 46.6 50.6
H11A C11 C10 H10A 287.4 290.4
C10 C11 H11A H11 119.4 120.4
C3 C12 C13 C16 177.8 180.0
N4 C14 C13 C12 0.1 360.0
C13 C12 C16 C15 0.5 360.0
C13 C12 C16 H16 180.5 180.0
C14 C13 C12 H13 180.0 180.1
C12 C13 C14 H14 180.1 180.0
C3 C12 C16 C13 182.2 180.0
N4 C15 C16 C12 359.7 0.0
C16 C12 C13 C14 359.6 0.0
C16 C12 C13 H13 179.6 180.0
C12 C16 C15 H15 179.7 180.0
C15 C16 C12 H16 180.0 180.0
C13 C14 N4 C15 0.2 0.1
N4 C14 C13 H14 180.0 179.9
C14 C13 C12 C16 359.6 0.0
C12 C13 C14 H13 180.0 179.9
H13 C13 C12 C16 179.6 180.0
C12 C13 H13 C14 180.0 180.1
H13 C13 C14 H14 0.1 0.1
H14 C14 N4 C15 180.1 180.0
N4 C14 H14 C13 180.0 180.1
H14 C14 C13 H13 0.1 0.1
N4 C15 C16 H15 180.0 180.0
C12 C16 C15 H16 180.0 180.0
N4 C15 H15 C16 180.0 180.0
H15 C15 C16 H16 359.7 0.0
C12 C16 H16 C15 180.0 180.0
H16 C16 C15 H15 359.7 0.0
C18 C17 C H 305.2 55.0
C C17 C18 H17 120.3 120.0
C C17 C18 H17A 239.7 240.0
H17 C17 C18 H17A 119.4 120.1
C19 C18 C17 C23 180.1 180.3
C17 C18 C19 C20 180.0 180.0
C17 C18 C19 H19 0.0 359.9
C17 C18 C23 C22 180.0 179.8
C17 C18 C23 H23 0.0 0.0
H17 C17 C H 65.5 175.0
C C17 H17 C18 238.2 240.0
C C17 H17 H17A 119.1 119.9
C18 C17 H17 H17A 240.9 239.9
H17 C17 C18 C19 333.4 330.1
H17 C17 C18 C23 153.3 149.7
H17A C17 C H 184.9 295.0
C C17 H17A C18 121.8 120.0
C C17 H17A H17 240.9 240.1
C18 C17 H17A H17 119.1 120.1
H17A C17 C18 C19 214.0 210.0
H17A C17 C18 C23 33.9 29.7
C19 C18 C17 H17 333.4 330.1
C19 C18 C17 H17A 214.0 210.0
C17 C18 C19 C23 179.9 179.7
C19 C18 C23 C22 359.9 359.5
C19 C18 C23 H23 179.9 179.7
C20 C19 C18 H19 180.0 180.1
C18 C19 C20 C21 359.9 359.9
C18 C19 C20 H20 179.9 180.0
C23 C18 C17 H17 153.3 149.7
C23 C18 C17 H17A 33.9 29.7
C17 C18 C23 C19 180.1 180.3
C23 C18 C19 C20 0.1 0.3
C23 C18 C19 H19 180.1 180.3
C21 C22 C23 C18 0.0 0.5
C18 C23 C22 H22 180.0 180.3
C22 C23 C18 H23 180.0 179.7
C20 C19 C18 C23 0.1 0.3
C18 C19 C20 H19 180.0 179.9
C21 C20 C19 H20 180.0 179.9
C19 C20 C21 C22 0.0 0.0
C19 C20 C21 H21 180.0 179.9
H19 C19 C18 C23 180.1 180.3
C18 C19 H19 C20 180.0 180.1
H19 C19 C20 C21 179.9 180.0
H19 C19 C20 H20 359.9 0.1
C21 C20 C19 H19 179.9 180.0
C19 C20 C21 H20 180.0 180.1
C22 C21 C20 H21 180.0 180.1
C20 C21 C22 C23 0.0 359.8
C20 C21 C22 H22 180.0 180.0
H20 C20 C19 H19 359.9 0.1
C19 C20 H20 C21 180.0 179.9
H20 C20 C21 C22 180.0 180.0
H20 C20 C21 H21 0.0 359.9
C18 C23 C22 C21 0.0 0.5
C22 C21 C20 H20 180.0 180.0
C20 C21 C22 H21 180.0 179.9
C23 C22 C21 H22 180.0 179.8
C21 C22 C23 H23 180.0 180.2
H21 C21 C20 H20 0.0 359.9
C20 C21 H21 C22 180.0 180.1
H21 C21 C22 C23 180.0 179.9
H21 C21 C22 H22 0.0 0.1
C18 C23 C22 H23 180.0 180.3
C23 C22 C21 H21 180.0 179.9
C21 C22 C23 H22 180.0 180.2
H22 C22 C21 H21 0.0 0.1
C21 C22 H22 C23 180.0 179.8
H22 C22 C23 H23 0.0 0.0
C18 C23 H23 C22 180.0 179.7
H23 C23 C22 H22 0.0 0.0