PDB Chemical Component C56

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C56

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O16 C15 1.224 1.216
C15 C2 1.516 1.473
C15 N17 1.338 1.348
C2 C3 1.400 1.404
C2 C1 1.381 1.398
C3 O13 1.373 1.356
C3 C4 1.390 1.384
O13 C14 1.428 1.429
C4 C5 1.379 1.390
C5 N10 1.410 1.390
C5 C6 1.394 1.393
N10 C12 1.452 1.470
N10 C11 1.459 1.469
C6 N7 1.389 1.480
C6 C1 1.383 1.366
N7 O9 1.218 1.218
N7 O8 1.387 1.218
N17 C18 1.459 1.465
C05 C06 1.568 1.543
C05 N09 1.512 1.475
C05 C18 1.604 1.529
C06 C07 1.532 1.551
C07 C08 1.534 1.550
C08 N09 1.506 1.478
N09 C10 1.500 1.469
C10 C13 1.530 1.530
N17 H17 1.000 0.970
C1 H1 1.080 1.080
C4 H4 1.080 1.081
C14 H141 1.100 1.090
C14 H142 1.100 1.090
C14 H143 1.100 1.089
C12 H121 1.099 1.090
C12 H122 1.100 1.090
C12 H123 1.100 1.089
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C11 H113 1.100 1.090
C18 H181 1.100 1.090
C18 H182 1.100 1.090
C05 H05 1.100 1.090
C06 H061 1.100 1.090
C06 H062 1.100 1.090
C07 H071 1.100 1.090
C07 H072 1.100 1.090
C08 H081 1.099 1.090
C08 H082 1.100 1.090
C10 H101 1.100 1.089
C10 H102 1.101 1.090
C13 H131 1.100 1.090
C13 H132 1.101 1.091
C13 H133 1.100 1.090

Bond Angles for C56

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O16 C15 C2 117.9 120.0
O16 C15 N17 119.7 120.1
C2 C15 N17 122.4 120.0
C15 C2 C3 125.5 120.1
C15 C2 C1 116.5 120.1
C15 N17 C18 121.2 120.0
C15 N17 H17 119.4 120.0
C3 C2 C1 118.0 119.8
C2 C3 O13 123.2 120.2
C2 C3 C4 120.9 119.6
C2 C1 C6 120.8 120.1
C2 C1 H1 119.6 120.0
O13 C3 C4 115.9 120.2
C3 O13 C14 117.1 117.0
C3 C4 C5 120.7 119.9
C3 C4 H4 119.6 120.0
O13 C14 H141 109.5 109.4
O13 C14 H142 109.5 109.5
O13 C14 H143 109.5 109.4
C4 C5 N10 117.2 119.9
C4 C5 C6 118.1 120.2
C5 C4 H4 119.6 120.0
N10 C5 C6 124.6 119.9
C5 N10 C12 123.6 111.0
C5 N10 C11 122.9 111.0
C5 C6 N7 123.4 119.8
C5 C6 C1 121.3 120.4
C12 N10 C11 113.4 111.0
N10 C12 H121 109.5 109.5
N10 C12 H122 109.5 109.5
N10 C12 H123 109.5 109.4
N10 C11 H111 109.5 109.5
N10 C11 H112 109.5 109.5
N10 C11 H113 109.5 109.5
N7 C6 C1 115.3 119.8
C6 N7 O9 119.8 120.0
C6 N7 O8 116.7 120.0
C6 C1 H1 119.6 119.9
O9 N7 O8 123.4 120.0
C18 N17 H17 119.4 120.0
N17 C18 H181 107.2 109.4
N17 C18 H182 107.2 109.4
C06 C05 N09 105.7 107.2
C05 C06 C07 108.8 103.0
C06 C05 H05 109.9 109.9
C05 C06 H061 109.7 110.7
C05 C06 H062 109.7 110.7
C05 N09 C08 109.2 108.6
C05 N09 C10 124.4 111.0
N09 C05 H05 110.7 109.9
C05 C18 H181 107.2 109.5
C05 C18 H182 107.2 109.6
C06 C07 C08 105.6 101.6
C07 C06 H061 109.6 110.7
C07 C06 H062 109.6 110.7
C06 C07 H071 110.4 111.0
C06 C07 H072 110.4 111.0
C07 C08 N09 109.7 104.8
C08 C07 H071 110.5 111.0
C08 C07 H072 110.4 111.0
C07 C08 H081 109.4 110.3
C07 C08 H082 109.4 110.4
C08 N09 C10 109.9 111.0
N09 C08 H081 109.4 110.4
N09 C08 H082 109.4 110.4
N09 C10 C13 114.4 109.5
N09 C10 H101 108.2 109.5
N09 C10 H102 108.2 109.5
C13 C10 H101 108.2 109.5
C13 C10 H102 108.2 109.4
C10 C13 H131 109.5 109.4
C10 C13 H132 109.5 109.5
C10 C13 H133 109.4 109.5
H141 C14 H142 109.5 109.4
H141 C14 H143 109.5 109.5
H142 C14 H143 109.4 109.5
H121 C12 H122 109.5 109.5
H121 C12 H123 109.5 109.5
H122 C12 H123 109.5 109.5
H111 C11 H112 109.5 109.5
H111 C11 H113 109.5 109.5
H112 C11 H113 109.5 109.5
H181 C18 H182 109.5 109.4
H061 C06 H062 109.5 110.8
H071 C07 H072 109.5 110.9
H081 C08 H082 109.5 110.4
H101 C10 H102 109.5 109.5
H131 C13 H132 109.4 109.5
H131 C13 H133 109.5 109.5
H132 C13 H133 109.5 109.5

Torsion Angles for C56

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C15 O16 N17 180.6 180.2
O16 C15 C2 C3 188.0 0.0
O16 C15 C2 C1 8.0 179.8
O16 C15 N17 C18 0.6 360.0
O16 C15 N17 H17 180.6 180.0
O16 C15 C2 N17 179.4 179.8
C2 C15 N17 C18 179.9 179.7
C2 C15 N17 H17 359.9 359.8
C3 C2 C15 C1 180.0 180.3
C15 C2 C3 O13 0.1 0.0
C15 C2 C3 C4 180.1 180.0
C15 C2 C1 C6 180.1 179.8
C15 C2 C1 H1 0.1 360.0
O16 C15 N17 C2 180.7 180.2
N17 C15 C2 C3 8.6 180.2
N17 C15 C2 C1 188.6 360.0
C18 N17 C15 H17 180.0 180.0
C15 N17 C18 H181 224.8 295.1
C15 N17 C18 H182 342.2 55.0
C3 C2 C15 N17 8.6 180.2
C15 C2 C3 C1 180.0 179.7
C3 C2 C1 C6 0.1 359.5
C3 C2 C1 H1 180.1 179.7
O13 C3 C2 C4 179.9 180.0
C2 C3 O13 C14 164.0 180.0
C2 C3 C4 C5 359.2 0.0
C2 C3 C4 H4 179.2 179.9
C1 C2 C15 N17 188.6 360.0
C15 C2 C1 C3 180.0 180.3
C1 C2 C3 O13 180.1 180.3
C1 C2 C3 C4 0.1 0.2
C5 C6 C1 C2 0.4 0.5
N7 C6 C1 C2 179.7 180.2
C6 C1 C2 H1 180.0 179.8
O13 C3 C2 C1 180.1 180.3
C2 C3 O13 C4 180.1 180.0
O13 C3 C4 C5 179.3 180.0
O13 C3 C4 H4 359.2 359.9
C3 O13 C14 H141 180.0 60.0
C3 O13 C14 H142 300.0 180.0
C3 O13 C14 H143 60.0 300.0
C4 C3 C2 C1 0.1 0.2
C2 C3 C4 O13 180.0 180.0
C4 C3 O13 C14 343.9 0.0
C3 C4 C5 N10 179.0 180.0
C3 C4 C5 C6 1.2 359.9
C5 C4 C3 H4 180.0 180.1
C14 O13 C3 C4 343.9 0.0
H141 C14 O13 H142 240.0 240.1
H141 C14 O13 H143 120.0 120.0
H142 C14 O13 H143 240.0 240.0
C3 C4 C5 H4 180.0 179.9
N10 C5 C4 C6 177.8 180.1
C4 C5 N10 C12 192.5 300.0
C4 C5 N10 C11 12.9 63.9
C4 C5 C6 N7 179.7 180.0
C4 C5 C6 C1 359.0 359.8
C4 C5 N10 C6 182.4 179.9
N10 C5 C4 H4 359.0 0.1
N10 C5 C6 N7 2.1 360.0
N10 C5 C6 C1 181.4 179.8
C12 N10 C5 C11 179.6 236.1
C5 N10 C12 H121 180.0 60.0
C5 N10 C12 H122 300.0 180.0
C5 N10 C12 H123 60.0 300.0
C5 N10 C11 H111 180.0 60.0
C5 N10 C11 H112 300.0 180.0
C5 N10 C11 H113 60.0 300.0
C2 C1 C6 C5 0.4 0.5
C4 C5 C6 N10 177.6 180.1
C6 C5 C4 H4 181.2 180.0
C6 C5 N10 C12 10.1 120.0
C6 C5 N10 C11 190.5 244.0
N7 C6 C5 C1 180.7 180.2
C5 C6 N7 O9 260.6 180.0
C5 C6 N7 O8 83.5 0.1
C5 C6 C1 H1 180.4 180.2
C12 N10 C5 C6 10.1 120.0
C5 N10 C12 C11 180.3 124.0
C12 N10 C11 H111 0.3 184.0
C12 N10 C11 H112 120.4 304.0
C12 N10 C11 H113 240.3 64.0
H121 C12 N10 H122 240.0 240.0
H121 C12 N10 H123 120.0 120.0
H122 C12 N10 H123 240.0 240.0
C11 N10 C5 C6 190.5 244.0
C5 N10 C11 C12 179.7 236.1
C11 N10 C12 H121 359.7 296.1
C11 N10 C12 H122 119.7 56.1
C11 N10 C12 H123 239.7 176.0
H111 C11 N10 H112 240.0 240.0
H111 C11 N10 H113 120.0 120.0
H112 C11 N10 H113 240.0 240.0
C2 C1 C6 N7 179.7 180.2
C5 C6 N7 C1 179.3 179.8
N7 C6 C1 H1 359.7 0.0
O9 N7 C6 O8 177.1 179.9
C2 C1 C6 H1 180.0 180.2
C5 C6 C1 N7 180.7 180.2
C1 C6 N7 O9 81.2 0.2
C1 C6 N7 O8 264.1 180.3
O9 N7 C6 C1 81.2 0.2
C6 N7 O9 O8 183.1 180.1
O8 N7 C6 C1 264.1 180.3
C6 N7 O8 O9 177.0 179.9
C15 N17 C18 H17 180.0 180.0
C05 C18 N17 H181 238.7 240.0
C05 C18 N17 H182 121.3 120.1
H181 C18 N17 H182 242.6 240.1
C06 C05 N09 C08 8.9 1.0
C06 C05 N09 C10 141.3 123.3
N09 C05 C06 H05 119.5 119.4
C06 C05 C18 H181 51.2 303.4
C06 C05 C18 H182 293.7 183.4
C05 C06 C07 C08 7.8 324.3
C07 C06 C05 H061 240.1 241.6
C07 C06 C05 H062 119.9 118.4
C05 C06 C07 H071 127.3 82.4
C05 C06 C07 H072 248.4 206.3
H061 C06 C05 H062 239.8 236.8
N09 C05 C06 C07 349.6 22.3
C06 C05 N09 H05 241.0 240.6
N09 C05 C06 H061 109.5 140.7
N09 C05 C06 H062 229.7 263.9
N09 C05 C18 H181 167.7 61.2
N09 C05 C18 H182 50.3 301.1
C07 C08 N09 C05 355.8 335.9
C08 N09 C05 C10 227.6 237.7
C05 N09 C08 H081 235.7 217.1
C05 N09 C08 H082 115.8 94.8
C05 N09 C10 C13 233.2 174.8
C05 N09 C10 H101 353.9 294.8
C05 N09 C10 H102 112.5 54.8
C05 C18 N17 H17 283.5 355.1
N17 C18 C05 H181 121.3 120.0
N17 C18 C05 H182 238.7 240.0
H181 C18 C05 H182 117.4 120.0
C07 C06 C05 N09 349.6 22.3
C07 C06 C05 H05 230.1 262.9
C05 C06 C07 H061 119.9 118.4
C05 C06 C07 H062 240.1 241.6
C06 C07 C08 N09 357.7 37.1
C08 C07 C06 H071 240.6 241.9
C08 C07 C06 H072 119.4 118.1
C06 C07 C08 H081 117.7 155.9
C06 C07 C08 H082 237.6 278.2
H061 C06 C07 H062 120.2 123.2
H071 C07 C06 H072 238.8 236.2
C05 N09 C08 C07 355.8 335.9
C08 C07 C06 H061 247.9 205.9
C08 C07 C06 H062 127.8 82.7
C06 C07 C08 H071 119.4 118.1
C06 C07 C08 H072 240.6 241.9
C07 C08 N09 C10 216.1 213.6
N09 C08 C07 H081 240.0 241.2
N09 C08 C07 H082 120.0 118.8
H071 C07 C08 H072 121.2 123.8
H081 C08 C07 H082 240.0 237.6
C05 N09 C08 C10 139.6 122.3
C08 N09 C05 H05 127.8 120.4
N09 C08 C07 H071 238.3 279.0
N09 C08 C07 H072 117.0 155.2
C07 C08 N09 H081 120.0 118.8
C07 C08 N09 H082 240.0 241.1
C08 N09 C10 C13 5.4 295.6
C08 N09 C10 H101 126.1 55.6
C08 N09 C10 H102 244.7 175.7
H081 C08 N09 H082 119.9 122.3
C05 N09 C10 C08 227.8 239.2
C10 N09 C05 H05 260.3 242.7
C10 N09 C08 H081 96.1 94.8
C10 N09 C08 H082 336.1 332.5
C13 C10 N09 H101 239.3 240.0
C13 C10 N09 H102 120.7 120.0
N09 C10 C13 H131 180.0 60.0
N09 C10 C13 H132 300.0 180.0
N09 C10 C13 H133 60.0 300.0
H101 C10 N09 H102 241.4 240.0
N09 C10 C13 H101 120.7 120.1
N09 C10 C13 H102 239.3 240.0
H101 C10 C13 H102 118.6 119.9
H131 C13 C10 H132 240.0 240.0
H131 C13 C10 H133 120.0 120.0
H132 C13 C10 H133 240.0 240.0
C15 N17 H17 C18 180.0 180.0
H17 N17 C18 H181 44.8 115.1
H17 N17 C18 H182 162.2 235.0
C2 C1 H1 C6 180.0 179.8
C3 C4 H4 C5 180.0 180.1
H4 C4 C5 N10 359.0 0.1
H4 C4 C5 C6 181.2 180.0
O13 C14 H141 H142 120.0 120.0
O13 C14 H141 H143 240.0 240.0
H142 C14 H141 H143 120.0 120.1
O13 C14 H142 H141 240.0 240.1
O13 C14 H142 H143 120.0 120.0
H141 C14 H142 H143 240.0 239.9
O13 C14 H143 H141 120.0 120.0
O13 C14 H143 H142 240.0 240.0
H141 C14 H143 H142 120.0 120.0
H121 C12 N10 C11 359.7 296.1
N10 C12 H121 H122 120.0 120.0
N10 C12 H121 H123 240.0 240.0
H122 C12 H121 H123 120.0 120.0
H122 C12 N10 C11 119.7 56.1
N10 C12 H122 H121 240.0 240.0
N10 C12 H122 H123 120.0 120.0
H121 C12 H122 H123 240.0 239.9
H123 C12 N10 C11 239.7 176.0
N10 C12 H123 H121 120.0 120.0
N10 C12 H123 H122 240.0 240.0
H121 C12 H123 H122 120.0 120.0
N10 C11 H111 H112 120.0 120.0
N10 C11 H111 H113 240.0 240.0
H112 C11 H111 H113 120.0 120.0
N10 C11 H112 H111 240.0 240.0
N10 C11 H112 H113 120.0 120.0
H111 C11 H112 H113 240.0 240.0
N10 C11 H113 H111 120.0 120.0
N10 C11 H113 H112 240.0 240.0
H111 C11 H113 H112 120.0 120.0
H181 C18 N17 H17 44.8 115.1
N17 C18 H181 H182 115.9 119.9
C05 C18 H181 H182 244.1 239.9
H182 C18 N17 H17 162.2 235.0
N17 C18 H182 H181 244.1 240.1
C05 C18 H182 H181 115.9 120.1
C06 C05 H05 N09 116.4 117.8
H05 C05 C06 C07 230.1 262.9
H05 C05 C06 H061 350.0 21.3
H05 C05 C06 H062 110.2 144.5
H05 C05 N09 C08 127.8 120.4
H05 C05 N09 C10 260.3 242.7
H05 C05 C18 H181 291.0 182.3
H05 C05 C18 H182 173.6 62.2
H061 C06 C05 N09 109.5 140.7
C05 C06 H061 C07 240.6 246.4
H061 C06 C05 H05 350.0 21.3
C05 C06 H061 H062 120.3 123.2
H061 C06 C07 C08 247.9 205.9
C07 C06 H061 H062 239.7 236.8
H061 C06 C07 H071 7.3 324.0
H061 C06 C07 H072 128.5 87.9
H062 C06 C05 N09 229.7 263.9
C05 C06 H062 C07 119.4 113.6
H062 C06 C05 H05 110.2 144.5
C05 C06 H062 H061 239.7 236.8
H062 C06 C07 C08 127.8 82.7
C07 C06 H062 H061 120.3 123.2
H062 C06 C07 H071 247.2 200.8
H062 C06 C07 H072 8.4 324.6
C06 C07 H071 C08 243.5 247.7
H071 C07 C06 H061 7.3 324.0
H071 C07 C06 H062 247.2 200.8
C06 C07 H071 H072 121.7 123.9
H071 C07 C08 N09 238.3 279.0
C08 C07 H071 H072 238.2 236.2
H071 C07 C08 H081 358.3 37.8
H071 C07 C08 H082 118.2 160.1
C06 C07 H072 C08 116.4 112.2
H072 C07 C06 H061 128.5 87.9
H072 C07 C06 H062 8.4 324.6
C06 C07 H072 H071 238.3 236.1
H072 C07 C08 N09 117.0 155.2
C08 C07 H072 H071 121.8 123.9
H072 C07 C08 H081 237.1 274.0
H072 C07 C08 H082 357.0 36.3
C07 C08 H081 N09 239.8 244.6
H081 C08 C07 H071 358.3 37.8
H081 C08 C07 H072 237.1 274.0
C07 C08 H081 H082 119.9 122.3
H081 C08 N09 C10 96.1 94.8
N09 C08 H081 H082 240.1 237.7
C07 C08 H082 N09 120.2 115.4
H082 C08 C07 H071 118.2 160.1
H082 C08 C07 H072 357.0 36.3
C07 C08 H082 H081 240.1 237.7
H082 C08 N09 C10 336.1 332.5
N09 C08 H082 H081 119.9 122.3
N09 C10 H101 C13 235.5 240.0
N09 C10 H101 H102 117.8 120.0
C13 C10 H101 H102 242.2 240.1
H101 C10 C13 H131 59.3 299.9
H101 C10 C13 H132 179.3 59.9
H101 C10 C13 H133 299.3 179.9
N09 C10 H102 C13 124.5 120.0
N09 C10 H102 H101 242.2 239.9
C13 C10 H102 H101 117.8 120.0
H102 C10 C13 H131 300.7 180.0
H102 C10 C13 H132 60.7 300.0
H102 C10 C13 H133 180.7 60.0
H131 C13 C10 H101 59.3 299.9
H131 C13 C10 H102 300.7 180.0
C10 C13 H131 H132 120.0 120.0
C10 C13 H131 H133 240.0 240.0
H132 C13 H131 H133 120.0 120.0
H132 C13 C10 H101 179.3 59.9
H132 C13 C10 H102 60.7 300.0
C10 C13 H132 H131 240.0 240.0
C10 C13 H132 H133 120.0 120.0
H131 C13 H132 H133 240.0 240.0
H133 C13 C10 H101 299.3 179.9
H133 C13 C10 H102 180.7 60.0
C10 C13 H133 H131 120.0 120.0
C10 C13 H133 H132 240.0 240.0
H131 C13 H133 H132 120.0 120.0