PDB Chemical Component C53
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C53
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C2 |
C3 |
1.418 |
1.384 |
C2 |
C1 |
1.403 |
1.398 |
C2 |
H2 |
1.080 |
1.079 |
C3 |
C4 |
1.378 |
1.388 |
C3 |
H3 |
1.080 |
1.080 |
C4 |
C5 |
1.405 |
1.385 |
C4 |
H4 |
1.080 |
1.079 |
C5 |
H5 |
1.079 |
1.080 |
C5 |
N1 |
1.363 |
1.316 |
N1 |
C1 |
1.376 |
1.331 |
C1 |
C6 |
1.414 |
1.471 |
C6 |
H6C1 |
1.080 |
1.080 |
C6 |
C7 |
1.413 |
1.355 |
C7 |
S1 |
1.680 |
1.773 |
C7 |
C8 |
1.395 |
1.471 |
S1 |
C9 |
1.626 |
1.772 |
C8 |
O1 |
1.224 |
1.216 |
C8 |
N2 |
1.386 |
1.323 |
N2 |
H2N |
1.000 |
0.970 |
N2 |
C9 |
1.372 |
1.371 |
C9 |
N3 |
1.291 |
1.303 |
N3 |
H3N1 |
1.000 |
0.970 |
Bond Angles for C53
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
C2 |
C1 |
119.4 |
119.0 |
C3 |
C2 |
H2 |
120.3 |
120.5 |
C2 |
C3 |
C4 |
119.5 |
118.6 |
C2 |
C3 |
H3 |
120.2 |
120.7 |
C1 |
C2 |
H2 |
120.3 |
120.5 |
C2 |
C1 |
N1 |
119.8 |
120.5 |
C2 |
C1 |
C6 |
121.2 |
119.8 |
C4 |
C3 |
H3 |
120.3 |
120.7 |
C3 |
C4 |
C5 |
119.8 |
119.4 |
C3 |
C4 |
H4 |
120.1 |
120.3 |
C5 |
C4 |
H4 |
120.1 |
120.3 |
C4 |
C5 |
H5 |
119.7 |
119.5 |
C4 |
C5 |
N1 |
120.6 |
121.0 |
N1 |
C5 |
H5 |
119.7 |
119.5 |
C5 |
N1 |
C1 |
120.9 |
121.6 |
N1 |
C1 |
C6 |
118.6 |
119.7 |
C1 |
C6 |
H6C1 |
117.6 |
120.0 |
C1 |
C6 |
C7 |
124.8 |
120.0 |
C7 |
C6 |
H6C1 |
117.6 |
120.0 |
C6 |
C7 |
S1 |
122.8 |
127.7 |
C6 |
C7 |
C8 |
126.3 |
127.7 |
S1 |
C7 |
C8 |
110.6 |
104.6 |
C7 |
S1 |
C9 |
93.5 |
94.8 |
C7 |
C8 |
O1 |
124.6 |
122.4 |
C7 |
C8 |
N2 |
111.0 |
115.2 |
S1 |
C9 |
N2 |
112.6 |
106.8 |
S1 |
C9 |
N3 |
123.0 |
126.6 |
O1 |
C8 |
N2 |
124.4 |
122.4 |
C8 |
N2 |
H2N |
123.8 |
120.7 |
C8 |
N2 |
C9 |
112.3 |
118.7 |
C9 |
N2 |
H2N |
123.8 |
120.6 |
N2 |
C9 |
N3 |
124.4 |
126.6 |
C9 |
N3 |
H3N1 |
105.7 |
120.0 |
Torsion Angles for C53
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.4 |
C3 |
C2 |
C1 |
N1 |
357.0 |
359.9 |
C3 |
C2 |
C1 |
C6 |
184.8 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.1 |
C2 |
C3 |
C4 |
C5 |
0.2 |
359.9 |
C2 |
C3 |
C4 |
H4 |
180.2 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.6 |
C1 |
C2 |
C3 |
C4 |
1.3 |
0.1 |
C1 |
C2 |
C3 |
H3 |
181.3 |
180.0 |
C5 |
N1 |
C1 |
C2 |
3.2 |
0.1 |
N1 |
C1 |
C2 |
C6 |
172.2 |
179.9 |
C2 |
C1 |
C6 |
H6C1 |
158.2 |
353.8 |
C2 |
C1 |
C6 |
C7 |
338.2 |
173.9 |
C3 |
C2 |
H2 |
C1 |
180.0 |
180.4 |
H2 |
C2 |
C3 |
C4 |
181.4 |
179.7 |
H2 |
C2 |
C3 |
H3 |
1.3 |
359.6 |
H2 |
C2 |
C1 |
N1 |
176.9 |
180.2 |
H2 |
C2 |
C1 |
C6 |
4.8 |
0.3 |
C4 |
C3 |
C2 |
C1 |
1.3 |
0.1 |
C4 |
C3 |
C2 |
H2 |
181.4 |
179.7 |
C2 |
C3 |
C4 |
H3 |
180.0 |
179.9 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
H5 |
179.9 |
180.0 |
C3 |
C4 |
C5 |
N1 |
359.9 |
0.1 |
H3 |
C3 |
C2 |
C1 |
181.3 |
180.0 |
H3 |
C3 |
C2 |
H2 |
1.3 |
359.6 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.1 |
H3 |
C3 |
C4 |
C5 |
180.2 |
180.0 |
H3 |
C3 |
C4 |
H4 |
0.3 |
0.1 |
C5 |
C4 |
C3 |
H3 |
180.2 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
N1 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
C4 |
C5 |
N1 |
C1 |
358.3 |
359.9 |
H4 |
C4 |
C3 |
H3 |
0.3 |
0.1 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
H5 |
359.9 |
360.0 |
H4 |
C4 |
C5 |
N1 |
179.9 |
180.1 |
H5 |
C5 |
C4 |
H4 |
359.9 |
360.0 |
C4 |
C5 |
H5 |
N1 |
180.0 |
180.1 |
H5 |
C5 |
N1 |
C1 |
178.4 |
180.0 |
C2 |
C1 |
N1 |
C5 |
3.2 |
0.1 |
N1 |
C5 |
C4 |
H4 |
179.9 |
180.1 |
C4 |
C5 |
N1 |
H5 |
180.0 |
179.9 |
C5 |
N1 |
C1 |
C6 |
175.6 |
180.1 |
N1 |
C1 |
C2 |
H2 |
176.9 |
180.2 |
C2 |
C1 |
N1 |
C6 |
187.6 |
180.1 |
C1 |
N1 |
C5 |
H5 |
178.4 |
180.0 |
N1 |
C1 |
C6 |
H6C1 |
346.0 |
173.9 |
N1 |
C1 |
C6 |
C7 |
166.0 |
353.9 |
C6 |
C1 |
C2 |
H2 |
4.8 |
0.3 |
C2 |
C1 |
C6 |
N1 |
172.2 |
179.9 |
C7 |
C6 |
C1 |
H6C1 |
180.0 |
180.0 |
C1 |
C6 |
C7 |
S1 |
165.5 |
163.9 |
C1 |
C6 |
C7 |
C8 |
337.9 |
343.5 |
C1 |
C6 |
H6C1 |
C7 |
180.0 |
180.0 |
H6C1 |
C6 |
C7 |
S1 |
345.5 |
343.9 |
H6C1 |
C6 |
C7 |
C8 |
157.9 |
163.6 |
C1 |
C6 |
C7 |
H6C1 |
180.0 |
180.0 |
S1 |
C7 |
C6 |
C8 |
187.6 |
180.3 |
C6 |
C7 |
S1 |
C9 |
174.7 |
179.9 |
C6 |
C7 |
C8 |
O1 |
7.2 |
0.1 |
C6 |
C7 |
C8 |
N2 |
184.6 |
180.1 |
S1 |
C7 |
C6 |
H6C1 |
345.5 |
343.9 |
C6 |
C7 |
S1 |
C8 |
173.4 |
179.7 |
S1 |
C7 |
C8 |
O1 |
180.4 |
179.8 |
S1 |
C7 |
C8 |
N2 |
357.8 |
359.8 |
C7 |
S1 |
C9 |
N2 |
0.1 |
359.8 |
C7 |
S1 |
C9 |
N3 |
178.2 |
180.0 |
C8 |
C7 |
C6 |
H6C1 |
157.9 |
163.6 |
C6 |
C7 |
C8 |
S1 |
186.8 |
180.3 |
C8 |
C7 |
S1 |
C9 |
1.2 |
0.2 |
O1 |
C8 |
C7 |
N2 |
182.6 |
180.0 |
C7 |
C8 |
N2 |
H2N |
182.3 |
180.0 |
C7 |
C8 |
N2 |
C9 |
2.3 |
0.1 |
C9 |
S1 |
C7 |
C8 |
1.2 |
0.2 |
C8 |
N2 |
C9 |
S1 |
358.6 |
0.1 |
S1 |
C9 |
N2 |
H2N |
178.6 |
180.2 |
N2 |
C9 |
S1 |
N3 |
181.9 |
179.8 |
S1 |
C9 |
N3 |
H3N1 |
1.0 |
0.0 |
C7 |
C8 |
O1 |
N2 |
177.1 |
180.0 |
O1 |
C8 |
N2 |
H2N |
359.8 |
0.0 |
O1 |
C8 |
N2 |
C9 |
179.7 |
180.1 |
C7 |
C8 |
N2 |
O1 |
182.6 |
180.0 |
S1 |
C9 |
N2 |
C8 |
358.6 |
0.1 |
C9 |
N2 |
C8 |
H2N |
180.0 |
180.1 |
C8 |
N2 |
C9 |
N3 |
180.5 |
179.9 |
C8 |
N2 |
H2N |
C9 |
180.0 |
180.1 |
H2N |
N2 |
C9 |
N3 |
0.5 |
0.0 |
S1 |
C9 |
N2 |
N3 |
178.1 |
180.2 |
C8 |
N2 |
C9 |
H2N |
180.0 |
179.9 |
N2 |
C9 |
N3 |
H3N1 |
178.9 |
180.3 |
S1 |
C9 |
N3 |
N2 |
182.1 |
179.8 |
N3 |
C9 |
N2 |
H2N |
0.5 |
0.0 |