Atom Nomenclature for C4Z

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for C4Z

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
C3 C4
CAD C5
CAC C6
CAB C7
CAG C8
CAF C9
CAE C10
CAH C11
CAI C12
CBM C13
OBN O1
OBO O2
O3 O3
C2 C14
O2 O4
O4 O5
O6 O6
O5 O7
C1 C15
O1 O8
CAR C16
CAW C17
CAV C18
CAU C19
CAT C20
CAS C21
OAX O9
CAY C22
OBA O10
CBB C23
CBH C24
CBC C25
OBG O11
CBD C26
OBF O12
CAZ C27
OBE O13
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46