PDB Chemical Component C45

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C45

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.481 1.344
N1 C6 1.438 1.363
N1 C1' 1.463 1.465
C2 N3 1.322 1.332
C2 O2 1.127 1.220
N3 C4 1.368 1.327
C4 C5 1.520 1.409
C4 N4 1.280 1.376
C5 C6 1.357 1.355
C5 H5 1.103 1.080
C6 H6 1.103 1.080
N4 O 1.391 1.415
N4 H4 1.019 0.970
C1' C2' 1.517 1.540
C1' O4' 1.480 1.437
C1' H1' 1.115 1.089
C2' C3' 1.426 1.547
C2' H2'1 1.115 1.090
C2' H2'2 1.115 1.090
CM2 O 1.486 1.429
CM2 HM21 1.115 1.089
CM2 HM22 1.115 1.090
CM2 HM23 1.115 1.089
C3' C4' 1.575 1.549
C3' O3' 1.502 1.430
C3' H3' 1.115 1.090
C4' O4' 1.400 1.446
C4' C5' 1.514 1.530
C4' H4' 1.115 1.090
O3' HA 0.950 0.967
C5' O5' 1.612 1.428
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.089
O5' P 1.597 1.610
P O1P 1.626 1.609
P O2P 1.604 1.609
P O3P 1.584 1.480
O1P H1P 0.951 0.967
O2P H2P 0.951 0.967

Bond Angles for C45

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 118.2 120.3
C2 N1 C1' 125.9 119.9
N1 C2 N3 114.4 121.1
N1 C2 O2 124.6 119.5
C6 N1 C1' 115.8 119.8
N1 C6 C5 124.7 119.3
N1 C6 H6 117.6 120.4
N1 C1' C2' 120.5 109.9
N1 C1' O4' 104.0 109.8
N1 C1' H1' 109.1 109.9
N3 C2 O2 120.6 119.4
C2 N3 C4 130.4 120.7
N3 C4 C5 116.4 119.6
N3 C4 N4 125.6 120.2
C5 C4 N4 118.0 120.2
C4 C5 C6 115.4 119.0
C4 C5 H5 122.3 120.6
C4 N4 O 103.7 120.0
C4 N4 H4 128.2 120.0
C6 C5 H5 122.3 120.5
C5 C6 H6 117.6 120.4
O N4 H4 128.2 120.0
N4 O CM2 101.7 106.8
C2' C1' O4' 104.4 107.4
C2' C1' H1' 109.1 109.9
C1' C2' C3' 100.7 104.2
C1' C2' H2'1 115.6 110.5
C1' C2' H2'2 115.6 110.5
O4' C1' H1' 109.1 109.9
C1' O4' C4' 107.8 106.8
C3' C2' H2'1 115.6 110.5
C3' C2' H2'2 115.6 110.5
C2' C3' C4' 109.0 102.1
C2' C3' O3' 116.5 110.9
C2' C3' H3' 109.0 110.9
H2'1 C2' H2'2 94.9 110.5
O CM2 HM21 101.7 109.5
O CM2 HM22 115.2 109.5
O CM2 HM23 115.2 109.4
HM21 CM2 HM22 115.2 109.5
HM21 CM2 HM23 115.2 109.4
HM22 CM2 HM23 95.2 109.5
C4' C3' O3' 104.0 110.9
C4' C3' H3' 109.0 110.9
C3' C4' O4' 103.4 103.6
C3' C4' C5' 119.9 110.7
C3' C4' H4' 108.8 110.6
O3' C3' H3' 109.0 110.8
C3' O3' HA 104.0 106.8
O4' C4' C5' 106.6 110.8
O4' C4' H4' 108.8 110.5
C5' C4' H4' 108.8 110.5
C4' C5' O5' 94.2 109.5
C4' C5' H5'1 118.2 109.5
C4' C5' H5'2 118.2 109.5
O5' C5' H5'1 118.2 109.4
O5' C5' H5'2 118.2 109.5
C5' O5' P 116.5 106.9
H5'1 C5' H5'2 92.0 109.5
O5' P O1P 113.9 109.5
O5' P O2P 114.0 109.4
O5' P O3P 104.6 109.5
O1P P O2P 104.1 109.5
O1P P O3P 105.5 109.5
P O1P H1P 113.9 106.8
O2P P O3P 114.6 109.5
P O2P H2P 114.0 106.9

Torsion Angles for C45

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 183.5 180.1
C2 N1 C6 C5 352.0 359.7
C2 N1 C6 H6 172.0 180.1
C2 N1 C1' C2' 96.5 300.3
C2 N1 C1' O4' 212.9 58.3
C2 N1 C1' H1' 329.2 179.3
N3 C2 N1 O2 187.0 179.9
N1 C2 N3 C4 355.5 0.1
C2 N1 C6 C1' 176.9 179.9
C6 N1 C2 N3 6.5 360.0
C6 N1 C2 O2 179.6 180.1
C6 N1 C1' C2' 273.2 120.3
C6 N1 C1' O4' 29.5 238.2
C6 N1 C1' H1' 145.8 359.2
C4 C5 C6 N1 6.0 0.6
N1 C6 C5 H5 186.0 180.0
C5 C6 N1 H6 180.0 179.6
C2 N1 C1' C6 183.4 180.1
C1' N1 C2 N3 183.1 179.9
C1' N1 C2 O2 356.1 0.0
C1' N1 C6 C5 175.1 179.7
C1' N1 C6 H6 355.1 0.1
C2' C1' N1 O4' 243.6 242.0
C2' C1' N1 H1' 127.3 121.0
N1 C1' C2' C3' 153.9 121.4
N1 C1' C2' H2'1 279.1 240.1
N1 C1' C2' H2'2 28.6 2.7
O4' C1' N1 H1' 243.7 239.0
N1 C1' O4' C4' 197.3 214.2
N3 C2 N1 C6 6.5 360.0
N3 C2 N1 C1' 183.1 179.9
N1 C2 N3 O2 173.3 180.1
C2 N3 C4 C5 2.7 0.2
C2 N3 C4 N4 184.4 179.9
O2 C2 N1 C6 179.6 180.1
O2 C2 N1 C1' 356.1 0.0
N1 C2 O2 N3 187.4 179.9
O2 C2 N3 C4 182.2 180.0
C4 N3 C2 O2 182.2 180.0
C5 C4 N3 N4 178.3 180.2
N3 C4 C5 C6 357.0 359.5
N3 C4 C5 H5 177.0 180.0
N3 C4 N4 O 356.8 359.9
N3 C4 N4 H4 176.8 180.1
N1 C6 C5 C4 6.0 0.6
N3 C4 C5 N4 181.5 179.8
C5 C4 N4 O 178.5 179.7
C5 C4 N4 H4 358.5 359.8
C6 C5 C4 H5 180.0 179.5
C4 C5 C6 H6 186.0 180.2
N3 C4 N4 C5 178.3 180.2
N4 C4 C5 C6 175.4 179.7
N4 C4 C5 H5 355.4 0.3
O N4 C4 H4 180.0 179.8
C4 N4 O CM2 182.4 180.0
C5 C6 N1 C1' 175.1 179.7
N1 C6 C5 H6 180.0 180.4
C6 C5 C4 N4 175.4 179.7
C4 C5 C6 H5 180.0 180.5
H5 C5 C4 N4 355.4 0.3
C4 C5 H5 C6 180.0 179.4
H5 C5 C6 H6 6.0 359.7
H6 C6 N1 C1' 355.1 0.1
N1 C6 H6 C5 180.0 179.6
H6 C6 C5 H5 6.0 359.7
C4 N4 O H4 180.0 180.2
N4 O CM2 HM21 180.0 180.0
N4 O CM2 HM22 54.7 300.1
N4 O CM2 HM23 305.3 60.1
C4 N4 H4 O 180.0 179.8
H4 N4 O CM2 2.4 359.9
N1 C1' C2' O4' 116.2 119.4
N1 C1' C2' H1' 232.7 239.0
O4' C1' C2' H1' 116.5 119.5
C2' C1' O4' C4' 324.5 333.7
C3' C2' C1' H2'1 234.7 241.3
C3' C2' C1' H2'2 125.3 118.7
C1' C2' C3' C4' 332.7 20.9
C1' C2' C3' O3' 89.9 139.1
C1' C2' C3' H3' 213.8 262.7
H2'1 C2' C1' H2'2 250.5 237.4
N1 C1' O4' C2' 232.9 240.5
N1 C1' O4' H1' 116.3 121.0
C2' C1' O4' H1' 243.5 240.5
O4' C1' C2' C3' 37.7 2.0
O4' C1' C2' H2'1 163.0 120.7
O4' C1' C2' H2'2 272.5 243.3
C3' C4' O4' C1' 17.7 39.9
C1' O4' C4' C5' 145.0 158.5
C1' O4' C4' H4' 262.1 281.4
N1 C1' H1' C2' 133.5 121.0
N1 C1' H1' O4' 247.0 239.0
C2' C1' H1' O4' 113.5 118.0
H1' C1' C2' C3' 281.2 242.4
H1' C1' C2' H2'1 46.5 1.1
H1' C1' C2' H2'2 155.9 123.8
H1' C1' O4' C4' 81.0 93.2
C3' C2' C1' O4' 37.7 2.0
C3' C2' C1' H1' 281.2 242.4
C1' C2' C3' H2'1 125.3 118.7
C1' C2' C3' H2'2 234.7 241.3
H2'1 C2' C3' H2'2 109.4 122.5
C4' C3' C2' O3' 242.8 241.8
C4' C3' C2' H3' 118.9 118.2
C2' C3' C4' O4' 7.1 323.1
C2' C3' C4' C5' 248.7 204.3
C2' C3' C4' H4' 122.6 81.5
O3' C3' C2' H3' 236.1 236.4
C2' C3' O3' HA 60.1 61.4
H2'1 C2' C1' O4' 163.0 120.7
H2'1 C2' C1' H1' 46.5 1.1
C1' C2' H2'1 C3' 242.8 245.2
C1' C2' H2'1 H2'2 121.4 122.7
C3' C2' H2'1 H2'2 238.6 237.5
H2'1 C2' C3' C4' 207.4 262.1
H2'1 C2' C3' O3' 324.7 20.4
H2'1 C2' C3' H3' 88.5 144.0
H2'2 C2' C1' O4' 272.5 243.3
H2'2 C2' C1' H1' 155.9 123.8
C1' C2' H2'2 C3' 117.2 114.8
C1' C2' H2'2 H2'1 238.6 237.3
C3' C2' H2'2 H2'1 121.4 122.6
H2'2 C2' C3' C4' 98.0 139.6
H2'2 C2' C3' O3' 215.2 257.8
H2'2 C2' C3' H3' 339.1 21.4
CM2 O N4 H4 2.4 359.9
HM21 CM2 O HM22 125.3 240.0
HM21 CM2 O HM23 234.7 119.9
HM22 CM2 O HM23 109.5 240.0
O CM2 HM21 HM22 234.7 120.0
O CM2 HM21 HM23 125.3 240.1
HM22 CM2 HM21 HM23 250.6 120.0
O CM2 HM22 HM21 117.9 240.0
O CM2 HM22 HM23 239.0 120.0
HM21 CM2 HM22 HM23 121.0 240.0
O CM2 HM23 HM21 242.1 120.0
O CM2 HM23 HM22 121.0 240.0
HM21 CM2 HM23 HM22 239.0 120.0
C1' O4' C4' C3' 17.7 39.9
C4' C3' C2' H2'1 207.4 262.1
C4' C3' C2' H2'2 98.0 139.6
C2' C3' C4' O3' 124.9 118.2
C2' C3' C4' H3' 241.1 241.8
O3' C3' C4' H3' 116.2 123.5
C4' C3' O3' HA 180.0 174.2
O4' C4' C3' C5' 118.4 118.7
O4' C4' C3' H4' 244.5 241.6
C5' C4' C3' H4' 126.1 122.8
C3' C4' C5' O5' 50.6 180.0
C3' C4' C5' H5'1 175.8 299.9
C3' C4' C5' H5'2 285.3 60.0
O3' C3' C2' H2'1 324.7 20.4
O3' C3' C2' H2'2 215.2 257.8
C2' C3' O3' C4' 240.1 247.3
C2' C3' O3' H3' 123.8 123.7
C4' C3' O3' H3' 243.8 236.4
O3' C3' C4' O4' 242.2 204.8
O3' C3' C4' C5' 123.8 86.1
O3' C3' C4' H4' 357.7 323.2
H3' C3' C2' H2'1 88.5 144.0
H3' C3' C2' H2'2 339.1 21.4
C2' C3' H3' C4' 118.8 112.7
C2' C3' H3' O3' 231.8 236.3
C4' C3' H3' O3' 113.0 123.6
H3' C3' C4' O4' 125.9 81.3
H3' C3' C4' C5' 7.6 322.5
H3' C3' C4' H4' 241.4 199.7
H3' C3' O3' HA 296.2 297.8
C4' O4' C1' H1' 81.0 93.2
O4' C4' C3' O3' 242.2 204.8
O4' C4' C3' H3' 125.9 81.3
C3' C4' O4' C5' 232.7 241.3
C3' C4' O4' H4' 115.5 118.5
C5' C4' O4' H4' 242.8 237.2
O4' C4' C5' O5' 293.8 65.7
O4' C4' C5' H5'1 59.1 185.7
O4' C4' C5' H5'2 168.5 305.7
C5' C4' C3' O3' 123.8 86.1
C5' C4' C3' H3' 7.6 322.5
C3' C4' C5' O4' 116.7 114.3
C3' C4' C5' H4' 233.9 237.1
O4' C4' C5' H4' 117.1 122.8
O5' C5' C4' H5'1 234.7 240.1
O5' C5' C4' H5'2 125.3 120.0
C4' C5' O5' P 213.4 180.0
H5'1 C5' C4' H5'2 250.6 239.9
H4' C4' C3' O3' 357.7 323.2
H4' C4' C3' H3' 241.4 199.7
C3' C4' H4' O4' 248.0 245.9
C3' C4' H4' C5' 132.3 122.9
O4' C4' H4' C5' 244.3 237.0
H4' C4' C5' O5' 176.7 302.9
H4' C4' C5' H5'1 302.0 62.8
H4' C4' C5' H5'2 51.4 182.9
HA O3' C3' H3' 296.2 297.8
O5' C5' C4' H4' 176.7 302.9
C4' C5' O5' H5'1 125.3 120.0
C4' C5' O5' H5'2 234.7 240.0
H5'1 C5' O5' H5'2 109.4 120.0
C5' O5' P O1P 321.2 180.0
C5' O5' P O2P 80.5 299.9
C5' O5' P O3P 206.5 60.0
H5'1 C5' C4' H4' 302.0 62.8
C4' C5' H5'1 O5' 247.5 240.0
C4' C5' H5'1 H5'2 123.8 120.0
O5' C5' H5'1 H5'2 236.2 240.0
H5'1 C5' O5' P 88.1 60.0
H5'2 C5' C4' H4' 51.4 182.9
C4' C5' H5'2 O5' 112.5 120.0
C4' C5' H5'2 H5'1 236.2 239.9
O5' C5' H5'2 H5'1 123.8 119.9
H5'2 C5' O5' P 338.7 300.0
P O5' C5' H5'1 88.1 60.0
P O5' C5' H5'2 338.7 300.0
O1P P O5' O2P 240.6 240.0
O1P P O5' O3P 114.7 120.0
O5' P O1P H1P 180.0 180.0
O2P P O5' O3P 234.0 240.0
O5' P O2P H2P 180.0 300.0
O5' P O1P O2P 124.8 120.0
O5' P O1P O3P 245.8 240.0
O2P P O1P O3P 121.0 120.1
O1P P O2P H2P 304.8 60.0
O5' P O2P O1P 235.2 240.0
O5' P O2P O3P 120.5 120.0
O1P P O2P O3P 245.3 240.0
O2P P O1P H1P 55.2 60.0
O5' P O3P O1P 120.5 120.0
O5' P O3P O2P 234.4 240.0
O1P P O3P O2P 113.9 120.0
O3P P O1P H1P 294.2 300.0
O3P P O2P H2P 59.5 180.0
H1P O1P P O2P 55.2 60.0
H1P O1P P O3P 294.2 300.0
H2P O2P P O3P 59.5 180.0