PDB Chemical Component C43

Ideal Model

Chemical Description

Name 2'-O-METHYOXYETHYL-CYTIDINE-5'-MONOPHOSPHATE
Formula C12 H20 N3 O9 P
Formal charge 0
Molecular weight 381.276 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 45
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3
Bond count 46
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-(2-methoxyethyl)cytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-(2-methoxyethoxy)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) COCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=NC2=O)N
SMILES (CACTVS) COCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=NC2=O)N
Stereo SMILES (OpenEye) COCCO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H20N3O9P/c1-21-4-5-22-10-9(16)7(6-23-25(18,19)20)24-11(10)15-3-2-8(13)14-12(15)17/h2-3,7,9-11,16H,4-6H2,1H3,(H2,13,14,17)(H2,18,19,20)/t7-,9-,10-,11-/m1/s1
InChIKey descriptor XQYCHAUACFLMBW-QCNRFFRDSA-N

Status Information

Last modified 2013-02-19
Created 1999-05-12
Release status REL
Model PDB code 468D
Processing site RCSB