PDB Chemical Component C43

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C43

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP3 1.497 1.609
P OP2 1.600 1.611
P OP1 1.490 1.480
P O5' 1.586 1.610
OP3 HOP3 0.950 0.967
OP2 HOP2 0.950 0.966
O5' C5' 1.421 1.429
C5' C4' 1.496 1.530
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' O4' 1.456 1.438
C4' C3' 1.516 1.541
C4' H4' 1.100 1.089
O4' C1' 1.420 1.444
C3' O3' 1.406 1.429
C3' C2' 1.520 1.548
C3' H3' 1.101 1.090
O3' HA 0.950 0.967
C2' O2' 1.413 1.428
C2' C1' 1.522 1.550
C2' H2' 1.100 1.090
O2' CA' 1.417 1.429
C1' N1 1.471 1.465
C1' H1' 1.100 1.090
N1 C2 1.407 1.346
N1 C6 1.364 1.363
C2 O2 1.250 1.220
C2 N3 1.358 1.332
N3 C4 1.337 1.327
C4 N4 1.340 1.375
C4 C5 1.430 1.410
N4 H4N1 1.000 0.969
N4 H4N2 0.999 0.970
C5 C6 1.338 1.355
C5 H5 1.080 1.079
C6 H6 1.080 1.079
CA' CB' 1.495 1.530
CA' HA'1 1.101 1.090
CA' HA'2 1.100 1.090
CB' OC' 1.463 1.429
CB' HB'1 1.100 1.091
CB' HB'2 1.100 1.090
CD' OC' 1.468 1.429
CD' HD'1 1.100 1.091
CD' HD'2 1.100 1.091
CD' HD'3 1.100 1.090

Bond Angles for C43

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP3 P OP2 105.9 109.5
OP3 P OP1 119.2 109.5
OP3 P O5' 107.8 109.5
P OP3 HOP3 109.5 114.0
OP2 P OP1 112.8 109.4
OP2 P O5' 103.4 109.5
P OP2 HOP2 109.5 114.0
OP1 P O5' 106.6 109.5
P O5' C5' 121.2 123.0
O5' C5' C4' 109.2 109.5
O5' C5' H5'1 109.5 109.5
O5' C5' H5'2 109.5 109.5
C4' C5' H5'1 109.5 109.5
C4' C5' H5'2 109.6 109.4
C5' C4' O4' 109.6 109.9
C5' C4' C3' 114.7 109.9
C5' C4' H4' 109.7 109.9
H5'1 C5' H5'2 109.5 109.4
O4' C4' C3' 103.0 107.3
O4' C4' H4' 110.3 109.8
C4' O4' C1' 109.7 107.0
C3' C4' H4' 109.4 110.0
C4' C3' O3' 115.5 110.4
C4' C3' C2' 102.0 104.2
C4' C3' H3' 108.4 110.5
O4' C1' C2' 107.1 103.5
O4' C1' N1 108.7 110.6
O4' C1' H1' 111.5 110.6
O3' C3' C2' 112.3 110.5
O3' C3' H3' 109.9 110.5
C3' O3' HA 109.5 114.0
C2' C3' H3' 108.3 110.6
C3' C2' O2' 110.9 110.9
C3' C2' C1' 101.0 102.1
C3' C2' H2' 110.6 110.9
O2' C2' C1' 111.1 110.9
O2' C2' H2' 112.2 110.8
C2' O2' CA' 119.5 114.0
C1' C2' H2' 110.5 110.9
C2' C1' N1 108.7 110.6
C2' C1' H1' 110.0 110.6
O2' CA' CB' 106.1 109.5
O2' CA' HA'1 110.3 109.4
O2' CA' HA'2 110.3 109.4
N1 C1' H1' 110.7 110.7
C1' N1 C2 118.7 119.8
C1' N1 C6 121.0 119.8
C2 N1 C6 120.3 120.3
N1 C2 O2 119.3 119.4
N1 C2 N3 119.0 121.1
N1 C6 C5 121.3 119.2
N1 C6 H6 119.3 120.4
O2 C2 N3 121.7 119.5
C2 N3 C4 120.1 120.7
N3 C4 N4 118.2 120.2
N3 C4 C5 121.8 119.6
N4 C4 C5 120.0 120.2
C4 N4 H4N1 120.0 120.0
C4 N4 H4N2 120.0 119.9
C4 C5 C6 117.5 119.0
C4 C5 H5 121.2 120.6
H4N1 N4 H4N2 120.0 120.0
C6 C5 H5 121.2 120.4
C5 C6 H6 119.4 120.4
CB' CA' HA'1 110.3 109.5
CB' CA' HA'2 110.3 109.5
CA' CB' OC' 110.9 109.5
CA' CB' HB'1 109.1 109.4
CA' CB' HB'2 109.1 109.5
HA'1 CA' HA'2 109.5 109.5
OC' CB' HB'1 109.1 109.5
OC' CB' HB'2 109.1 109.5
CB' OC' CD' 113.0 114.0
HB'1 CB' HB'2 109.5 109.4
OC' CD' HD'1 109.5 109.5
OC' CD' HD'2 109.5 109.5
OC' CD' HD'3 109.5 109.5
HD'1 CD' HD'2 109.5 109.4
HD'1 CD' HD'3 109.4 109.5
HD'2 CD' HD'3 109.5 109.5

Torsion Angles for C43

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP3 OP1 231.6 240.0
OP2 P OP3 O5' 110.1 120.0
OP3 P OP2 HOP2 132.1 59.9
OP1 P OP3 O5' 238.5 240.0
OP3 P O5' C5' 45.9 295.0
OP3 P OP2 OP1 132.1 120.0
OP3 P OP2 O5' 246.8 240.0
OP2 P OP3 HOP3 231.6 60.0
OP1 P OP2 O5' 114.7 120.0
OP2 P O5' C5' 294.1 175.0
OP3 P OP1 OP2 234.9 240.0
OP3 P OP1 O5' 122.1 120.0
OP1 P OP3 HOP3 360.0 180.0
OP2 P OP1 O5' 247.2 240.0
OP1 P OP2 HOP2 0.0 299.9
OP1 P O5' C5' 174.9 55.0
OP3 P O5' OP2 111.8 120.0
OP3 P O5' OP1 231.0 240.0
O5' P OP3 HOP3 121.5 300.0
OP2 P O5' OP1 119.1 120.0
O5' P OP2 HOP2 245.3 179.9
P O5' C5' C4' 180.4 180.0
P O5' C5' H5'1 300.3 300.0
P O5' C5' H5'2 60.4 60.0
HOP3 OP3 P OP2 231.6 60.0
HOP3 OP3 P OP1 360.0 180.0
HOP3 OP3 P O5' 121.5 300.0
HOP2 OP2 P OP1 0.0 299.9
HOP2 OP2 P O5' 245.3 179.9
C4' C5' O5' H5'1 240.0 240.0
C4' C5' O5' H5'2 120.0 120.0
O5' C5' C4' O4' 286.5 66.5
O5' C5' C4' C3' 41.7 184.3
O5' C5' C4' H4' 165.3 305.5
H5'1 C5' O5' H5'2 239.9 240.0
O5' C5' C4' H5'1 119.9 120.0
O5' C5' C4' H5'2 240.1 240.0
H5'1 C5' C4' H5'2 120.1 120.0
O4' C4' C5' C3' 244.8 242.2
O4' C4' C5' H4' 121.2 121.0
C5' C4' O4' C1' 145.6 145.9
C3' C4' C5' H4' 236.4 238.8
C5' C4' C3' O3' 80.1 119.9
C5' C4' C3' C2' 202.2 238.6
C5' C4' C3' H3' 316.4 357.4
O5' C5' H5'1 C4' 240.3 240.0
O5' C5' H5'1 H5'2 120.1 120.0
C4' C5' H5'1 H5'2 239.8 240.0
H5'1 C5' C4' O4' 166.5 306.4
H5'1 C5' C4' C3' 281.7 64.2
H5'1 C5' C4' H4' 45.3 185.5
O5' C5' H5'2 C4' 119.7 120.0
O5' C5' H5'2 H5'1 239.9 240.0
C4' C5' H5'2 H5'1 120.2 120.0
H5'2 C5' C4' O4' 46.4 186.5
H5'2 C5' C4' C3' 161.6 304.3
H5'2 C5' C4' H4' 285.2 65.5
O4' C4' C5' H5'1 166.5 306.4
O4' C4' C5' H5'2 46.4 186.5
C5' C4' O4' C3' 122.5 119.4
C5' C4' O4' H4' 239.2 239.0
C3' C4' O4' H4' 116.7 119.6
O4' C4' C3' O3' 199.1 239.3
O4' C4' C3' C2' 321.2 357.9
O4' C4' C3' H3' 75.4 116.8
C4' O4' C1' C2' 2.3 320.0
C4' O4' C1' N1 245.0 201.4
C4' O4' C1' H1' 122.7 78.4
C3' C4' C5' H5'1 281.7 64.2
C3' C4' C5' H5'2 161.6 304.3
C5' C4' C3' O4' 241.0 240.6
C5' C4' C3' H4' 123.7 121.2
O4' C4' C3' H4' 242.7 240.5
C3' C4' O4' C1' 23.0 26.5
O3' C3' C4' C2' 237.9 241.3
O3' C3' C4' H3' 123.7 122.5
C4' C3' O3' HA 180.0 298.5
C2' C3' C4' H3' 245.8 241.2
C4' C3' C2' O2' 281.6 220.9
C4' C3' C2' C1' 39.4 339.2
C4' C3' C2' H2' 156.4 97.3
H4' C4' C5' H5'1 45.3 185.5
H4' C4' C5' H5'2 285.2 65.5
C5' C4' H4' O4' 120.8 121.0
C5' C4' H4' C3' 233.3 238.9
O4' C4' H4' C3' 112.6 117.9
H4' C4' O4' C1' 266.4 266.9
H4' C4' C3' O3' 316.4 358.7
H4' C4' C3' C2' 78.4 117.4
H4' C4' C3' H3' 192.6 236.2
C1' O4' C4' C3' 23.0 26.5
C1' O4' C4' H4' 266.4 266.9
C3' C2' C1' O4' 333.6 37.0
O2' C2' C1' O4' 91.3 155.2
O4' C1' C2' H2' 216.6 278.8
C2' C1' O4' N1 117.2 118.5
C2' C1' O4' H1' 239.6 241.5
N1 C1' O4' H1' 122.3 123.0
O4' C1' N1 C2 200.1 53.5
O4' C1' N1 C6 21.4 233.3
O3' C3' C4' H4' 316.4 358.7
C4' C3' O3' C2' 116.4 114.8
C4' C3' O3' H3' 237.0 237.5
C2' C3' O3' H3' 120.6 122.7
O3' C3' C2' O2' 45.8 339.6
O3' C3' C2' C1' 163.6 97.8
O3' C3' C2' H2' 280.7 216.0
C2' C3' C4' H4' 78.4 117.4
C4' C3' C2' O3' 235.8 241.4
C4' C3' C2' H3' 114.2 118.7
O4' C1' C2' C3' 333.6 37.0
O3' C3' C2' H3' 238.5 237.4
C2' C3' O3' HA 63.6 183.7
O2' C2' C3' C1' 242.2 241.8
O2' C2' C3' H2' 125.2 123.6
C3' C2' O2' CA' 172.9 268.6
C1' C2' C3' H2' 243.0 241.8
C3' C2' C1' N1 90.9 155.5
C3' C2' C1' H1' 212.3 278.5
H3' C3' C4' H4' 192.6 236.2
C4' C3' H3' O3' 127.0 122.5
C4' C3' H3' C2' 250.0 245.1
O3' C3' H3' C2' 123.0 122.6
H3' C3' O3' HA 302.9 61.1
H3' C3' C2' O2' 167.3 102.2
H3' C3' C2' C1' 285.2 220.4
H3' C3' C2' H2' 42.2 338.6
HA O3' C3' C2' 63.6 183.7
HA O3' C3' H3' 302.9 61.1
O4' C1' C2' O2' 91.3 155.2
O2' C2' C3' H3' 167.3 102.2
C3' C2' O2' C1' 111.5 112.7
C3' C2' O2' H2' 235.8 236.4
C1' C2' O2' H2' 124.3 123.7
O2' C2' C1' N1 208.5 273.8
O2' C2' C1' H1' 329.9 36.8
C2' O2' CA' CB' 159.7 180.0
C2' O2' CA' HA'1 279.2 300.0
C2' O2' CA' HA'2 40.2 60.0
O4' C1' C2' N1 242.8 241.5
O4' C1' C2' H1' 121.4 118.5
C1' C2' C3' H3' 285.2 220.4
C3' C2' C1' O2' 242.3 241.8
C3' C2' C1' H2' 117.1 118.2
O2' C2' C1' H2' 234.7 236.4
C1' C2' O2' CA' 61.4 155.8
N1 C1' C2' H1' 238.6 237.0
C2' C1' N1 C2 83.8 299.4
C2' C1' N1 C6 265.1 119.2
H2' C2' C3' H3' 42.2 338.6
C3' C2' H2' O2' 124.4 123.6
C3' C2' H2' C1' 249.0 247.3
O2' C2' H2' C1' 124.6 123.7
H2' C2' O2' CA' 297.1 32.2
H2' C2' C1' N1 333.8 37.4
H2' C2' C1' H1' 95.2 160.3
CA' O2' C2' C1' 61.4 155.8
CA' O2' C2' H2' 297.1 32.2
CB' CA' O2' HA'1 240.5 240.0
CB' CA' O2' HA'2 119.5 120.0
O2' CA' CB' OC' 190.0 65.0
O2' CA' CB' HB'1 310.2 185.0
O2' CA' CB' HB'2 69.8 304.9
HA'1 CA' O2' HA'2 238.9 240.0
O4' C1' N1 C2' 116.2 114.1
O4' C1' N1 H1' 237.2 237.0
N1 C1' C2' H2' 333.8 37.4
C2' C1' N1 H1' 121.0 122.9
C2 N1 C1' C6 178.7 180.2
C1' N1 C2 O2 2.7 360.0
C1' N1 C2 N3 182.6 180.0
C1' N1 C6 C5 177.9 179.7
C1' N1 C6 H6 357.9 359.9
O4' C1' H1' C2' 241.3 245.9
O4' C1' H1' N1 121.1 123.0
H1' C1' C2' H2' 95.2 160.3
C2' C1' H1' N1 239.8 237.1
H1' C1' N1 C2 322.9 176.5
H1' C1' N1 C6 144.2 356.3
C2 N1 C1' H1' 322.9 176.5
C1' N1 C2 C6 181.3 179.8
C2 N1 C6 C5 359.3 359.5
C2 N1 C6 H6 179.3 179.7
O2 C2 N1 N3 180.2 180.0
N1 C2 N3 C4 359.1 0.0
C6 N1 C1' H1' 144.2 356.3
C1' N1 C6 C2 178.7 180.2
C6 N1 C2 O2 181.4 180.2
C6 N1 C2 N3 1.2 0.2
C4 C5 C6 N1 360.0 0.5
N1 C6 C5 H5 180.0 180.3
C5 C6 N1 H6 180.0 179.8
O2 C2 N1 C6 181.4 180.2
N1 C2 O2 N3 179.8 180.0
O2 C2 N3 C4 178.9 180.0
N3 C2 N1 C6 1.2 0.2
N1 C2 N3 O2 180.2 180.0
C2 N3 C4 N4 180.0 180.0
C2 N3 C4 C5 0.2 0.0
N4 C4 N3 C5 179.9 180.0
N3 C4 N4 H4N1 360.0 0.0
N3 C4 N4 H4N2 180.0 180.0
N3 C4 C5 C6 0.4 359.7
N3 C4 C5 H5 180.3 180.0
N3 C4 N4 C5 180.1 180.0
N4 C4 C5 C6 180.5 179.7
N4 C4 C5 H5 0.5 360.0
H4N1 N4 C4 H4N2 180.0 180.0
N1 C6 C5 C4 360.0 0.5
N3 C4 C5 N4 179.8 180.0
C5 C4 N4 H4N1 179.8 180.0
C5 C4 N4 H4N2 359.9 0.0
C6 C5 C4 H5 180.0 179.8
C4 C5 C6 H6 179.9 180.3
H4N1 N4 C4 C5 179.8 180.0
C4 N4 H4N1 H4N2 180.0 180.0
H4N2 N4 C4 C5 359.9 0.0
C4 N4 H4N2 H4N1 180.0 180.0
N1 C6 C5 H6 180.0 180.2
C4 C5 C6 H5 180.0 180.2
C4 C5 H5 C6 180.0 179.8
H5 C5 C6 H6 360.0 0.1
N1 C6 H6 C5 180.0 179.8
H6 C6 C5 H5 360.0 0.1
O2' CA' CB' HA'1 119.5 120.0
O2' CA' CB' HA'2 240.5 240.1
HA'1 CA' CB' HA'2 121.0 120.1
OC' CB' CA' HB'1 239.8 240.0
OC' CB' CA' HB'2 120.2 120.0
CA' CB' OC' CD' 66.4 180.0
HB'1 CB' CA' HB'2 240.4 240.1
O2' CA' HA'1 CB' 243.1 240.0
O2' CA' HA'1 HA'2 121.6 119.9
CB' CA' HA'1 HA'2 238.5 239.9
HA'1 CA' CB' OC' 70.5 305.0
HA'1 CA' CB' HB'1 190.7 65.1
HA'1 CA' CB' HB'2 310.3 185.0
O2' CA' HA'2 CB' 116.9 120.0
O2' CA' HA'2 HA'1 238.5 240.1
CB' CA' HA'2 HA'1 121.5 120.1
HA'2 CA' CB' OC' 309.5 184.9
HA'2 CA' CB' HB'1 69.7 305.0
HA'2 CA' CB' HB'2 189.2 64.9
OC' CB' CA' HA'1 70.5 305.0
OC' CB' CA' HA'2 309.5 184.9
CA' CB' OC' HB'1 120.2 120.0
CA' CB' OC' HB'2 239.8 240.0
HB'1 CB' OC' HB'2 119.6 120.0
CB' OC' CD' HD'1 180.0 300.1
CB' OC' CD' HD'2 300.0 60.0
CB' OC' CD' HD'3 60.0 180.0
HB'1 CB' CA' HA'1 190.7 65.1
HB'1 CB' CA' HA'2 69.7 305.0
CA' CB' HB'1 OC' 238.7 240.0
CA' CB' HB'1 HB'2 119.4 119.9
OC' CB' HB'1 HB'2 240.7 240.0
HB'1 CB' OC' CD' 306.2 60.0
HB'2 CB' CA' HA'1 310.3 185.0
HB'2 CB' CA' HA'2 189.2 64.9
CA' CB' HB'2 OC' 121.3 120.0
CA' CB' HB'2 HB'1 240.6 240.1
OC' CB' HB'2 HB'1 119.3 120.1
HB'2 CB' OC' CD' 186.6 300.0
CD' OC' CB' HB'1 306.2 60.0
CD' OC' CB' HB'2 186.6 300.0
HD'1 CD' OC' HD'2 240.0 240.1
HD'1 CD' OC' HD'3 120.0 120.0
HD'2 CD' OC' HD'3 240.0 239.9
OC' CD' HD'1 HD'2 120.0 120.0
OC' CD' HD'1 HD'3 240.0 239.9
HD'2 CD' HD'1 HD'3 120.0 120.0
OC' CD' HD'2 HD'1 240.0 240.0
OC' CD' HD'2 HD'3 120.0 120.1
HD'1 CD' HD'2 HD'3 240.0 240.1
OC' CD' HD'3 HD'1 120.0 120.0
OC' CD' HD'3 HD'2 240.0 239.9
HD'1 CD' HD'3 HD'2 120.0 119.9