PDB Chemical Component C3Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C3Z
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C7 |
N8 |
1.308 |
1.310 |
| C7 |
C6 |
1.396 |
1.395 |
| N8 |
N9 |
1.398 |
1.401 |
| C6 |
C5 |
1.364 |
1.367 |
| N9 |
C5 |
1.377 |
1.366 |
| N9 |
C10 |
1.417 |
1.400 |
| C5 |
C3 |
1.482 |
1.479 |
| C26 |
C25 |
1.398 |
1.383 |
| C26 |
C28 |
1.398 |
1.382 |
| C11 |
C10 |
1.405 |
1.388 |
| C11 |
C12 |
1.400 |
1.381 |
| C25 |
C27 |
1.394 |
1.382 |
| C10 |
C15 |
1.408 |
1.389 |
| C3 |
C4 |
1.392 |
1.379 |
| C3 |
C2 |
1.417 |
1.413 |
| C28 |
C23 |
1.397 |
1.383 |
| O16 |
C2 |
1.349 |
1.358 |
| C12 |
C13 |
1.398 |
1.383 |
| C27 |
C24 |
1.398 |
1.383 |
| C4 |
C18 |
1.397 |
1.409 |
| C2 |
C1 |
1.389 |
1.357 |
| C15 |
C14 |
1.393 |
1.380 |
| C23 |
C24 |
1.395 |
1.382 |
| C23 |
C22 |
1.515 |
1.507 |
| C13 |
C14 |
1.400 |
1.383 |
| C18 |
C17 |
1.420 |
1.472 |
| C18 |
C19 |
1.454 |
1.384 |
| C1 |
C17 |
1.415 |
1.412 |
| C22 |
C19 |
1.514 |
1.507 |
| C17 |
N21 |
1.378 |
1.321 |
| C19 |
N20 |
1.318 |
1.339 |
| N21 |
N20 |
1.392 |
1.399 |
| C1 |
H1 |
1.080 |
1.080 |
| C7 |
H2 |
1.080 |
1.079 |
| C11 |
H3 |
1.080 |
1.080 |
| C12 |
H4 |
1.080 |
1.080 |
| C13 |
H5 |
1.080 |
1.081 |
| C14 |
H6 |
1.080 |
1.080 |
| C15 |
H7 |
1.079 |
1.081 |
| C22 |
H8 |
1.100 |
1.090 |
| C22 |
H9 |
1.100 |
1.090 |
| C24 |
H10 |
1.080 |
1.080 |
| C27 |
H11 |
1.080 |
1.080 |
| C4 |
H12 |
1.080 |
1.080 |
| C6 |
H13 |
1.080 |
1.080 |
| O16 |
H14 |
0.950 |
0.968 |
| N20 |
H15 |
1.000 |
0.971 |
| C25 |
H16 |
1.080 |
1.081 |
| C26 |
H17 |
1.080 |
1.080 |
| C28 |
H18 |
1.080 |
1.080 |
Bond Angles for C3Z
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C7 |
N8 |
109.2 |
108.6 |
| C7 |
N8 |
N9 |
108.5 |
108.6 |
| N8 |
C7 |
H2 |
125.4 |
125.7 |
| C7 |
C6 |
C5 |
107.4 |
107.9 |
| C6 |
C7 |
H2 |
125.4 |
125.7 |
| C7 |
C6 |
H13 |
126.3 |
126.1 |
| C26 |
C25 |
H16 |
120.3 |
120.0 |
| C28 |
C26 |
H17 |
120.1 |
120.0 |
| C26 |
C28 |
H18 |
119.6 |
120.0 |
| C11 |
C10 |
C15 |
119.8 |
119.8 |
| C11 |
C12 |
C13 |
120.0 |
120.0 |
| C12 |
C11 |
H3 |
120.0 |
120.0 |
| C11 |
C12 |
H4 |
120.0 |
120.0 |
| C25 |
C27 |
H11 |
119.8 |
120.0 |
| C10 |
C15 |
C14 |
119.8 |
120.0 |
| C10 |
C15 |
H7 |
120.1 |
120.0 |
| C3 |
C4 |
C18 |
119.3 |
119.4 |
| C3 |
C4 |
H12 |
120.4 |
120.3 |
| C12 |
C13 |
C14 |
120.1 |
120.2 |
| C13 |
C12 |
H4 |
120.0 |
119.9 |
| C12 |
C13 |
H5 |
120.0 |
119.9 |
| C27 |
C24 |
H10 |
119.8 |
120.0 |
| C4 |
C18 |
C17 |
120.3 |
119.0 |
| C18 |
C4 |
H12 |
120.3 |
120.3 |
| C2 |
C1 |
C17 |
118.2 |
119.9 |
| C2 |
C1 |
H1 |
120.9 |
120.1 |
| C15 |
C14 |
H6 |
119.8 |
120.0 |
| C23 |
C24 |
H10 |
119.8 |
120.1 |
| C23 |
C22 |
H8 |
107.7 |
109.5 |
| C23 |
C22 |
H9 |
107.8 |
109.5 |
| C14 |
C13 |
H5 |
120.0 |
119.9 |
| C13 |
C14 |
H6 |
119.8 |
120.0 |
| C18 |
C17 |
N21 |
105.6 |
106.7 |
| C18 |
C19 |
N20 |
107.6 |
107.9 |
| C1 |
C17 |
N21 |
133.9 |
134.4 |
| C17 |
C1 |
H1 |
120.9 |
120.0 |
| C22 |
C19 |
N20 |
127.1 |
126.1 |
| C17 |
N21 |
N20 |
110.0 |
109.0 |
| C19 |
N20 |
H15 |
125.2 |
125.0 |
| N21 |
N20 |
H15 |
125.2 |
124.9 |
| H8 |
C22 |
H9 |
109.5 |
109.4 |
Torsion Angles for C3Z
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N8 |
C7 |
C6 |
C5 |
0.1 |
0.0 |
| C6 |
C7 |
N8 |
H2 |
180.0 |
179.8 |
| N8 |
C7 |
C6 |
H13 |
180.1 |
180.0 |
| C6 |
C7 |
N8 |
N9 |
358.3 |
0.0 |
| N8 |
C7 |
C6 |
H2 |
180.0 |
180.2 |
| N9 |
N8 |
C7 |
H2 |
178.3 |
180.2 |
| C5 |
C6 |
C7 |
N8 |
0.1 |
0.0 |
| C5 |
C6 |
C7 |
H2 |
180.1 |
179.8 |
| C7 |
C6 |
C5 |
H13 |
180.0 |
180.0 |
| C7 |
N8 |
N9 |
C5 |
2.7 |
360.0 |
| C7 |
N8 |
N9 |
C10 |
176.5 |
180.0 |
| N9 |
C10 |
C15 |
H7 |
356.7 |
0.3 |
| C5 |
C3 |
C4 |
C18 |
175.4 |
180.0 |
| C5 |
C3 |
C4 |
H12 |
355.4 |
0.1 |
| C26 |
C25 |
C27 |
H11 |
180.5 |
180.0 |
| C28 |
C26 |
C25 |
H16 |
179.7 |
179.8 |
| C11 |
C10 |
C15 |
C14 |
359.7 |
360.0 |
| C11 |
C10 |
C15 |
H7 |
179.7 |
180.0 |
| C12 |
C11 |
C10 |
C15 |
359.4 |
360.0 |
| C11 |
C12 |
C13 |
C14 |
359.6 |
360.0 |
| C13 |
C12 |
C11 |
H4 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
H5 |
179.6 |
179.9 |
| C25 |
C27 |
C24 |
H10 |
180.7 |
180.0 |
| C10 |
C15 |
C14 |
H6 |
180.8 |
180.0 |
| C3 |
C4 |
C18 |
C17 |
1.1 |
0.0 |
| C18 |
C4 |
C3 |
H12 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
C17 |
357.6 |
0.0 |
| C3 |
C2 |
C1 |
H1 |
177.6 |
179.7 |
| C28 |
C23 |
C24 |
H10 |
178.0 |
180.0 |
| C28 |
C23 |
C22 |
H8 |
242.8 |
150.0 |
| C28 |
C23 |
C22 |
H9 |
0.9 |
30.0 |
| O16 |
C2 |
C1 |
C17 |
180.1 |
180.0 |
| O16 |
C2 |
C1 |
H1 |
0.1 |
359.7 |
| C13 |
C12 |
C11 |
H3 |
180.9 |
180.1 |
| C11 |
C12 |
C13 |
H4 |
180.0 |
179.9 |
| C14 |
C13 |
C12 |
H5 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
H6 |
179.5 |
180.1 |
| C23 |
C24 |
C27 |
H10 |
180.0 |
180.3 |
| C3 |
C4 |
C18 |
H12 |
180.0 |
180.0 |
| C4 |
C18 |
C17 |
N21 |
182.3 |
180.1 |
| C4 |
C18 |
C19 |
N20 |
175.0 |
180.0 |
| C2 |
C1 |
C17 |
N21 |
177.5 |
179.8 |
| C17 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| C10 |
C15 |
C14 |
H7 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
H5 |
179.5 |
180.0 |
| C13 |
C14 |
C15 |
H6 |
180.0 |
180.1 |
| C27 |
C24 |
C23 |
H10 |
180.0 |
179.7 |
| C24 |
C23 |
C22 |
H8 |
56.9 |
330.0 |
| C24 |
C23 |
C22 |
H9 |
174.9 |
210.0 |
| H8 |
C22 |
C23 |
H9 |
241.9 |
120.0 |
| C10 |
C15 |
C14 |
C13 |
0.8 |
0.1 |
| C14 |
C13 |
C12 |
H4 |
179.6 |
180.1 |
| C12 |
C13 |
C14 |
H5 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
H6 |
180.0 |
179.9 |
| C17 |
C18 |
C4 |
H12 |
181.1 |
180.0 |
| C17 |
C18 |
C19 |
N20 |
355.2 |
0.1 |
| C1 |
C17 |
C18 |
N21 |
177.6 |
179.8 |
| C18 |
C17 |
C1 |
H1 |
180.7 |
180.3 |
| C18 |
C17 |
N21 |
N20 |
1.0 |
359.8 |
| C3 |
C4 |
C18 |
C19 |
181.2 |
180.1 |
| C22 |
C19 |
C18 |
N20 |
187.4 |
179.8 |
| C18 |
C19 |
N20 |
H15 |
185.5 |
179.9 |
| C4 |
C18 |
C17 |
C1 |
359.9 |
360.0 |
| C2 |
C1 |
C17 |
H1 |
180.0 |
179.7 |
| C18 |
C17 |
C1 |
N21 |
183.2 |
180.2 |
| C1 |
C17 |
N21 |
N20 |
183.9 |
180.0 |
| C18 |
C19 |
C22 |
N20 |
171.2 |
180.3 |
| C22 |
C19 |
N20 |
H15 |
357.9 |
0.1 |
| N21 |
C17 |
C1 |
H1 |
357.5 |
0.1 |
| C17 |
N21 |
N20 |
H15 |
175.8 |
180.1 |
| C17 |
N21 |
N20 |
C19 |
355.8 |
0.3 |
| N21 |
N20 |
C19 |
H15 |
180.0 |
179.9 |
| C19 |
N20 |
N21 |
H15 |
180.0 |
180.1 |
| C2 |
C1 |
H1 |
C17 |
180.0 |
180.3 |
| H1 |
C1 |
C17 |
N21 |
357.5 |
0.1 |
| C6 |
C7 |
H2 |
N8 |
180.0 |
180.2 |
| H2 |
C7 |
N8 |
N9 |
178.3 |
180.2 |
| H2 |
C7 |
C6 |
C5 |
180.1 |
179.8 |
| H2 |
C7 |
C6 |
H13 |
0.1 |
359.8 |
| H3 |
C11 |
C10 |
C15 |
179.4 |
179.9 |
| H3 |
C11 |
C12 |
C13 |
180.9 |
180.1 |
| H3 |
C11 |
C12 |
H4 |
0.9 |
360.0 |
| C11 |
C12 |
H4 |
C13 |
180.0 |
180.1 |
| H4 |
C12 |
C11 |
H3 |
0.9 |
360.0 |
| H4 |
C12 |
C13 |
C14 |
179.6 |
180.1 |
| H4 |
C12 |
C13 |
H5 |
359.6 |
0.0 |
| C12 |
C13 |
H5 |
C14 |
180.0 |
180.0 |
| H5 |
C13 |
C12 |
H4 |
359.6 |
0.0 |
| H5 |
C13 |
C14 |
H6 |
359.5 |
0.1 |
| H6 |
C14 |
C13 |
H5 |
359.5 |
0.1 |
| C10 |
C15 |
H7 |
C14 |
180.0 |
180.0 |
| H7 |
C15 |
C14 |
H6 |
0.8 |
359.9 |
| C23 |
C22 |
H8 |
H9 |
116.9 |
240.0 |
| H8 |
C22 |
C19 |
N20 |
346.3 |
24.9 |
| C23 |
C22 |
H9 |
H8 |
243.1 |
120.1 |
| H9 |
C22 |
C19 |
N20 |
228.2 |
144.9 |
| H11 |
C27 |
C24 |
H10 |
0.7 |
360.0 |
| C3 |
C4 |
H12 |
C18 |
180.0 |
180.0 |
| H12 |
C4 |
C18 |
C17 |
181.1 |
180.0 |
| H13 |
C6 |
C7 |
N8 |
180.1 |
180.0 |
| C7 |
C6 |
H13 |
C5 |
180.0 |
180.0 |
| H13 |
C6 |
C7 |
H2 |
0.1 |
359.8 |
| H16 |
C25 |
C27 |
H11 |
0.5 |
360.0 |
| H17 |
C26 |
C25 |
H16 |
359.7 |
359.9 |
| H17 |
C26 |
C28 |
H18 |
359.0 |
359.8 |
| H18 |
C28 |
C26 |
H17 |
359.0 |
359.8 |