PDB Chemical Component C3Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C3Y

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2	H5	0.950	0.972
N	CA	1.465	1.442
CA	C	1.519	1.520
C	O	1.237	1.225
CA	CB	1.500	1.531
CB	SG	1.812	1.812
N1	O3	1.450	1.451
SG	C2	1.812	1.853
C1	C2	1.472	1.532
O2	C2	1.408	1.428
N1	C2	1.380	1.470
C	OXT	1.319	1.354
N	HN1	1.000	1.006
N	HN2	1.000	1.006
CA	HA	1.100	1.097
CB	HBC1	1.100	1.095
CB	HBC2	1.100	1.095
OXT	HOT	0.950	0.981
C1	H1C1	1.100	1.095
C1	H1C2	1.100	1.097
C1	H1C3	1.101	1.095
N1	H1	1.000	1.019
O3	H3	0.950	0.973

Bond Angles for C3Y

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	O2	H5	109.5	106.5
N	CA	C	112.4	111.9
N	CA	CB	110.3	112.0
CA	N	HN1	109.5	119.0
CA	N	HN2	109.5	119.0
N	CA	HA	109.5	105.2
CA	C	O	118.2	123.7
C	CA	CB	116.2	112.4
CA	C	OXT	119.2	113.3
C	CA	HA	102.6	106.1
O	C	OXT	122.5	123.0
CA	CB	SG	114.6	113.8
CB	CA	HA	105.1	108.8
CA	CB	HBC1	107.8	109.8
CA	CB	HBC2	106.6	110.4
CB	SG	C2	104.6	100.9
SG	CB	HBC1	107.8	107.3
SG	CB	HBC2	106.6	107.6
O3	N1	C2	116.0	106.8
O3	N1	H1	107.3	100.9
N1	O3	H3	109.5	99.4
SG	C2	C1	110.8	109.4
SG	C2	O2	119.3	110.1
SG	C2	N1	117.3	107.6
C1	C2	O2	103.5	108.1
C1	C2	N1	108.3	109.9
C2	C1	H1C1	109.5	111.7
C2	C1	H1C2	109.5	111.0
C2	C1	H1C3	109.4	112.3
O2	C2	N1	95.9	111.6
C2	N1	H1	107.4	109.2
C	OXT	HOT	109.5	111.9
HN1	N	HN2	109.4	120.6
HBC1	CB	HBC2	113.6	107.7
H1C1	C1	H1C2	109.5	104.9
H1C1	C1	H1C3	109.5	108.8
H1C2	C1	H1C3	109.5	107.8

Torsion Angles for C3Y

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
SG	C2	O2	H5	76.4	301.7
C1	C2	O2	H5	312.8	182.1
H5	O2	C2	N1	202.3	61.1
N	CA	C	O	71.4	354.3
C	CA	N	CB	131.4	127.2
N	CA	C	OXT	248.2	175.0
C	CA	N	HA	246.6	245.2
N	CA	CB	SG	200.9	67.2
CB	CA	N	HA	115.2	118.0
N	CA	CB	HBC1	320.9	307.0
N	CA	CB	HBC2	83.2	188.4
HN1	N	CA	HN2	240.0	166.5
N	CA	C	CB	231.6	233.0
C	CA	N	HN1	321.7	322.6
C	CA	N	HN2	81.6	156.1
N	CA	C	HA	117.6	114.3
O	C	CA	OXT	183.2	179.3
C	CA	CB	SG	71.5	300.3
CB	CA	C	HA	246.0	241.2
C	CA	CB	HBC1	191.5	180.0
C	CA	CB	HBC2	313.8	61.5
CA	C	OXT	HOT	183.3	179.3
O	C	CA	CB	199.8	121.2
CA	C	O	OXT	176.7	180.8
O	C	CA	HA	313.9	240.0
O	C	OXT	HOT	360.0	0.1
N	CA	CB	C	129.4	126.9
CB	CA	N	HN1	190.2	195.4
CB	CA	N	HN2	310.2	28.9
N	CA	CB	HA	242.0	244.1
CB	CA	C	O	199.8	121.2
CB	CA	C	OXT	16.6	302.0
C	CA	CB	HA	112.6	117.2
CA	CB	SG	C2	242.8	180.0
SG	CB	CA	HBC1	240.0	120.3
SG	CB	CA	HBC2	117.7	238.8
HBC1	CB	CA	HBC2	237.7	118.6
SG	CB	CA	HA	318.9	183.1
CA	CB	SG	HBC1	120.0	238.3
CA	CB	SG	HBC2	242.3	122.7
CB	SG	C2	C1	127.6	60.0
CB	SG	C2	O2	7.6	301.2
CB	SG	C2	N1	252.7	179.4
HBC1	CB	SG	HBC2	122.3	244.4
SG	C2	N1	O3	71.0	169.3
C1	C2	N1	O3	197.2	288.4
O2	C2	N1	O3	303.6	48.4
C2	N1	O3	H1	240.0	245.9
C2	SG	CB	HBC1	122.7	301.7
C2	SG	CB	HBC2	0.5	57.3
O3	N1	C2	SG	71.0	169.3
C1	C2	SG	O2	120.0	118.8
C1	C2	SG	N1	235.0	240.6
SG	C2	C1	H1C1	100.7	295.8
SG	C2	C1	H1C2	220.7	179.1
SG	C2	C1	H1C3	340.7	58.3
O2	C2	SG	N1	115.0	121.8
SG	C2	N1	H1	311.0	60.9
O3	N1	C2	C1	197.2	288.4
SG	C2	C1	O2	231.0	240.0
SG	C2	C1	N1	130.0	117.9
O2	C2	C1	N1	259.0	237.9
C1	C2	N1	H1	77.2	180.0
H1C1	C1	C2	H1C2	240.0	116.7
H1C1	C1	C2	H1C3	120.0	237.5
H1C2	C1	C2	H1C3	240.0	120.8
O3	N1	C2	O2	303.6	48.4
SG	C2	O2	C1	123.6	119.6
SG	C2	O2	N1	234.1	240.6
C1	C2	O2	N1	110.5	121.0
O2	C2	C1	H1C1	229.6	55.8
O2	C2	C1	H1C2	349.7	299.1
O2	C2	C1	H1C3	109.7	178.3
O2	C2	N1	H1	183.6	300.0
N1	C2	O2	H5	202.3	61.1
O3	N1	C2	H1	120.0	108.4
C2	N1	O3	H3	22.7	130.0
SG	C2	N1	C1	233.8	240.9
SG	C2	N1	O2	127.4	120.9
C1	C2	N1	O2	253.6	240.0
N1	C2	C1	H1C1	330.7	177.8
N1	C2	C1	H1C2	90.7	61.2
N1	C2	C1	H1C3	210.7	300.4
CA	C	OXT	O	183.4	179.3
OXT	C	CA	CB	16.6	302.0
OXT	C	CA	HA	130.6	60.7
HN1	N	CA	C	321.7	322.6
HN1	N	CA	CB	190.2	195.4
CA	N	HN1	HN2	120.0	193.7
HN1	N	CA	HA	75.1	77.4
HN2	N	CA	C	81.6	156.1
HN2	N	CA	CB	310.2	28.9
CA	N	HN2	HN1	240.0	166.3
HN2	N	CA	HA	195.0	270.9
N	CA	HA	C	240.4	241.2
N	CA	HA	CB	118.5	120.1
HA	CA	N	HN1	75.1	77.4
HA	CA	N	HN2	195.0	270.9
HA	CA	C	O	313.9	240.0
C	CA	HA	CB	238.1	238.9
HA	CA	C	OXT	130.6	60.7
HA	CA	CB	SG	318.9	183.1
HA	CA	CB	HBC1	78.9	62.8
HA	CA	CB	HBC2	201.2	304.3
CA	CB	HBC1	SG	235.8	124.1
HBC1	CB	CA	HA	78.9	62.8
CA	CB	HBC1	HBC2	117.9	239.7
HBC1	CB	SG	C2	122.7	301.7
SG	CB	HBC1	HBC2	242.1	115.6
CA	CB	HBC2	SG	122.9	235.3
HBC2	CB	CA	HA	201.2	304.3
CA	CB	HBC2	HBC1	241.4	119.9
HBC2	CB	SG	C2	0.5	57.3
SG	CB	HBC2	HBC1	118.6	244.6
H1C1	C1	C2	O2	229.6	55.8
H1C1	C1	C2	N1	330.7	177.8
C2	C1	H1C1	H1C2	120.0	239.7
C2	C1	H1C1	H1C3	240.0	124.5
H1C2	C1	H1C1	H1C3	120.0	244.9
H1C2	C1	C2	O2	349.7	299.1
H1C2	C1	C2	N1	90.7	61.2
C2	C1	H1C2	H1C1	240.0	120.8
C2	C1	H1C2	H1C3	120.0	236.6
H1C1	C1	H1C2	H1C3	240.0	115.8
H1C3	C1	C2	O2	109.7	178.3
H1C3	C1	C2	N1	210.7	300.4
C2	C1	H1C3	H1C1	120.0	235.8
C2	C1	H1C3	H1C2	240.0	122.6
H1C1	C1	H1C3	H1C2	120.0	246.8
O3	N1	H1	C2	234.6	247.7
H1	N1	O3	H3	142.7	244.1
H3	O3	N1	C2	22.7	130.0
H3	O3	N1	H1	142.7	244.1