PDB Chemical Component C3M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C3M

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.468	1.470
N1	H1N1	1.000	1.009
N1	H1N2	1.000	1.009
C2	C3	1.521	1.530
C2	C10	1.514	1.529
C2	H2	1.100	1.089
C3	C4	1.510	1.506
C3	H3C1	1.100	1.090
C3	H3C2	1.100	1.090
C4	C5	1.384	1.382
C4	C9	1.392	1.383
C5	C6	1.385	1.383
C5	H5	1.079	1.080
C6	C7	1.383	1.383
C6	H6	1.081	1.080
C7	C8	1.375	1.382
C7	H7	1.080	1.080
C8	C9	1.381	1.383
C8	H8	1.080	1.080
C9	H9	1.080	1.080
C10	O11	1.432	1.429
C10	C12	1.522	1.530
C10	H10	1.100	1.091
O11	H11	0.950	0.967
C12	N13	1.463	1.466
C12	H121	1.100	1.090
C12	H122	1.100	1.090
N13	S14	1.641	1.656
N13	H13	1.000	0.970
S14	O15	1.425	1.421
S14	O16	1.422	1.421
S14	C17	1.771	1.761
C17	C18	1.408	1.394
C17	C26	1.377	1.361
C18	C19	1.376	1.362
C18	H18	1.080	1.079
C19	C20	1.409	1.406
C19	H19	1.080	1.080
C20	C21	1.401	1.404
C20	C25	1.442	1.418
C21	C22	1.370	1.362
C21	H21	1.080	1.080
C22	C23	1.396	1.394
C22	H22	1.081	1.080
C23	C24	1.365	1.361
C23	H23	1.080	1.079
C24	C25	1.401	1.405
C24	H24	1.080	1.079
C25	C26	1.424	1.405
C26	H26	1.080	1.081

Bond Angles for C3M

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	H1N1	109.5	106.7
C2	N1	H1N2	109.5	106.7
N1	C2	C3	108.5	109.4
N1	C2	C10	106.1	109.5
N1	C2	H2	112.1	109.4
H1N1	N1	H1N2	109.5	106.7
C3	C2	C10	109.1	109.5
C3	C2	H2	109.3	109.5
C2	C3	C4	113.9	109.5
C2	C3	H3C1	107.0	109.5
C2	C3	H3C2	108.0	109.4
C10	C2	H2	111.6	109.5
C2	C10	O11	111.5	109.5
C2	C10	C12	108.3	109.5
C2	C10	H10	108.1	109.5
C4	C3	H3C1	107.0	109.5
C4	C3	H3C2	108.0	109.5
C3	C4	C5	119.4	120.0
C3	C4	C9	121.2	120.0
H3C1	C3	H3C2	113.0	109.4
C5	C4	C9	119.4	120.0
C4	C5	C6	119.7	120.0
C4	C5	H5	120.2	120.0
C4	C9	C8	120.2	120.0
C4	C9	H9	119.9	120.0
C6	C5	H5	120.1	120.0
C5	C6	C7	120.8	120.0
C5	C6	H6	119.6	120.0
C7	C6	H6	119.6	120.0
C6	C7	C8	119.3	120.0
C6	C7	H7	120.3	120.0
C8	C7	H7	120.3	120.1
C7	C8	C9	120.5	120.0
C7	C8	H8	119.7	120.0
C9	C8	H8	119.8	120.0
C8	C9	H9	119.9	120.0
O11	C10	C12	106.9	109.5
O11	C10	H10	109.5	109.5
C10	O11	H11	109.5	106.8
C12	C10	H10	112.6	109.4
C10	C12	N13	105.7	109.5
C10	C12	H121	111.5	109.4
C10	C12	H122	110.8	109.4
N13	C12	H121	111.6	109.5
N13	C12	H122	110.7	109.5
C12	N13	S14	118.5	120.0
C12	N13	H13	106.5	120.0
H121	C12	H122	106.6	109.5
S14	N13	H13	106.6	120.1
N13	S14	O15	105.3	105.8
N13	S14	O16	102.3	105.7
N13	S14	C17	110.8	107.4
O15	S14	O16	125.0	125.4
O15	S14	C17	103.4	105.8
O16	S14	C17	109.7	105.8
S14	C17	C18	117.5	119.5
S14	C17	C26	122.0	119.5
C18	C17	C26	120.5	121.0
C17	C18	C19	123.0	121.0
C17	C18	H18	118.5	119.5
C17	C26	C25	118.5	119.7
C17	C26	H26	120.8	120.1
C19	C18	H18	118.6	119.5
C18	C19	C20	118.3	119.6
C18	C19	H19	120.9	120.2
C20	C19	H19	120.8	120.2
C19	C20	C21	120.5	121.3
C19	C20	C25	119.4	119.4
C21	C20	C25	120.1	119.4
C20	C21	C22	118.8	119.7
C20	C21	H21	120.6	120.2
C20	C25	C24	118.5	119.4
C20	C25	C26	120.4	119.3
C22	C21	H21	120.6	120.1
C21	C22	C23	121.8	121.0
C21	C22	H22	119.1	119.5
C23	C22	H22	119.1	119.5
C22	C23	C24	120.5	121.0
C22	C23	H23	119.8	119.5
C24	C23	H23	119.7	119.5
C23	C24	C25	120.4	119.7
C23	C24	H24	119.8	120.2
C25	C24	H24	119.8	120.2
C24	C25	C26	121.1	121.3
C25	C26	H26	120.7	120.2

Torsion Angles for C3M

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H1N1	N1	C2	H1N2	120.0	246.2
C3	C2	N1	C10	242.9	240.0
C3	C2	N1	H2	120.8	120.0
N1	C2	C3	C4	206.6	295.0
N1	C2	C3	H3C1	88.6	55.1
N1	C2	C3	H3C2	326.6	175.0
C10	C2	N1	H2	237.9	240.0
N1	C2	C10	O11	291.6	180.0
N1	C2	C10	C12	174.3	60.0
N1	C2	C10	H10	52.0	300.0
C2	N1	H1N1	H1N2	240.0	113.8
H1N1	N1	C2	C3	33.4	300.0
H1N1	N1	C2	C10	150.5	60.0
H1N1	N1	C2	H2	272.6	180.0
C2	N1	H1N2	H1N1	120.0	246.2
H1N2	N1	C2	C3	273.4	53.8
H1N2	N1	C2	C10	30.5	173.8
H1N2	N1	C2	H2	152.6	293.8
C3	C2	N1	H1N1	33.4	300.0
C3	C2	N1	H1N2	273.4	53.8
N1	C2	C3	C10	115.2	120.0
N1	C2	C3	H2	237.5	240.1
C10	C2	C3	H2	122.3	120.1
C3	C2	C10	O11	48.4	300.0
C3	C2	C10	C12	291.1	180.0
C3	C2	C10	H10	168.8	60.0
C4	C3	C2	H3C1	118.1	239.9
C4	C3	C2	H3C2	240.0	120.0
C2	C3	C4	C5	226.5	90.0
C2	C3	C4	C9	48.3	269.8
H3C1	C3	C2	H3C2	121.9	240.1
C10	C2	N1	H1N1	150.5	60.0
C10	C2	N1	H1N2	30.5	173.8
N1	C2	C10	C3	243.2	240.0
N1	C2	C10	H2	122.4	120.0
C3	C2	C10	H2	239.1	239.9
C10	C2	C3	C4	91.4	175.0
C10	C2	C3	H3C1	333.4	295.1
C10	C2	C3	H3C2	211.4	55.0
O11	C10	C2	C12	117.3	120.0
O11	C10	C2	H10	239.6	240.0
C2	C10	O11	H11	7.0	300.0
C12	C10	C2	H10	122.3	120.0
C2	C10	C12	N13	191.6	185.0
C2	C10	C12	H121	70.2	305.0
C2	C10	C12	H122	311.6	65.0
H2	C2	N1	H1N1	272.6	180.0
H2	C2	N1	H1N2	152.6	293.8
N1	C2	H2	C3	120.4	119.9
N1	C2	H2	C10	241.1	240.0
C3	C2	H2	C10	120.7	120.1
H2	C2	C3	C4	329.2	54.9
H2	C2	C3	H3C1	211.1	175.0
H2	C2	C3	H3C2	89.2	294.9
H2	C2	C10	O11	169.2	60.0
H2	C2	C10	C12	51.9	300.0
H2	C2	C10	H10	289.7	180.0
C4	C3	C2	C10	91.4	175.0
C4	C3	C2	H2	329.2	54.9
C2	C3	C4	H3C1	241.9	120.1
C2	C3	C4	H3C2	120.0	240.0
H3C1	C3	C4	H3C2	238.1	120.0
C5	C4	C3	C9	178.2	180.3
C3	C4	C5	C6	179.9	180.0
C3	C4	C5	H5	359.9	360.0
C3	C4	C9	C8	180.8	179.8
C3	C4	C9	H9	0.8	0.2
H3C1	C3	C2	C10	333.4	295.1
H3C1	C3	C2	H2	211.1	175.0
C2	C3	H3C1	C4	122.5	239.9
C2	C3	H3C1	H3C2	241.2	119.9
C4	C3	H3C1	H3C2	118.8	240.0
H3C1	C3	C4	C5	344.6	330.0
H3C1	C3	C4	C9	166.3	149.7
H3C2	C3	C2	C10	211.4	55.0
H3C2	C3	C2	H2	89.2	294.9
C2	C3	H3C2	C4	236.4	120.0
C2	C3	H3C2	H3C1	118.2	240.1
C4	C3	H3C2	H3C1	241.8	120.0
H3C2	C3	C4	C5	106.5	210.0
H3C2	C3	C4	C9	288.3	29.7
C5	C4	C3	H3C1	344.6	330.0
C5	C4	C3	H3C2	106.5	210.0
C3	C4	C5	C9	181.7	179.7
C5	C4	C9	C8	2.5	359.5
C5	C4	C9	H9	182.5	179.9
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	C7	1.0	-0.0
C4	C5	C6	H6	181.0	179.9
C9	C4	C3	H3C1	166.3	149.7
C9	C4	C3	H3C2	288.3	29.7
C3	C4	C9	C5	178.2	180.3
C9	C4	C5	C6	358.2	0.3
C9	C4	C5	H5	178.2	180.3
C7	C8	C9	C4	357.7	0.4
C4	C9	C8	H8	177.6	180.3
C8	C9	C4	H9	180.0	179.6
C6	C5	C4	C9	358.2	0.3
C4	C5	C6	H5	180.0	180.0
C7	C6	C5	H6	180.0	180.1
C5	C6	C7	C8	359.2	359.9
C5	C6	C7	H7	179.3	179.9
H5	C5	C4	C9	178.2	180.3
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C7	181.0	180.0
H5	C5	C6	H6	1.0	359.9
C7	C6	C5	H5	181.0	180.0
C5	C6	C7	H6	180.0	179.9
C8	C7	C6	H7	180.0	180.0
C6	C7	C8	C9	1.4	359.8
C6	C7	C8	H8	181.5	180.0
H6	C6	C5	H5	1.0	359.9
C5	C6	H6	C7	180.0	180.1
H6	C6	C7	C8	179.2	180.0
H6	C6	C7	H7	359.3	360.0
C4	C9	C8	C7	357.7	0.4
C8	C7	C6	H6	179.2	180.0
C6	C7	C8	H7	180.0	180.0
C9	C8	C7	H8	180.0	179.9
C7	C8	C9	H9	177.7	180.0
H7	C7	C6	H6	359.3	360.0
C6	C7	H7	C8	180.0	180.0
H7	C7	C8	C9	181.4	179.9
H7	C7	C8	H8	1.5	0.0
C4	C9	C8	H9	180.0	180.4
C9	C8	C7	H7	181.4	179.9
C7	C8	C9	H8	180.0	180.1
H8	C8	C7	H7	1.5	0.0
C7	C8	H8	C9	180.0	179.9
H8	C8	C9	H9	357.6	359.9
C4	C9	H9	C8	180.0	179.6
H9	C9	C8	H8	357.6	359.9
O11	C10	C2	H2	169.2	60.0
C2	C10	O11	C12	241.8	240.0
C2	C10	O11	H10	119.6	120.1
C12	C10	O11	H10	237.8	240.1
O11	C10	C12	N13	71.4	65.0
O11	C10	C12	H121	309.9	185.0
O11	C10	C12	H122	191.4	305.0
C12	C10	C2	H2	51.9	300.0
C2	C10	C12	O11	120.2	120.0
C2	C10	C12	H10	240.5	240.0
O11	C10	C12	H10	120.3	119.9
C12	C10	O11	H11	125.2	60.0
N13	C12	C10	H121	121.4	240.0
N13	C12	C10	H122	240.0	120.0
C10	C12	N13	S14	179.6	165.0
C10	C12	N13	H13	299.6	345.0
H121	C12	C10	H122	118.6	240.0
H10	C10	C2	H2	289.7	180.0
C2	C10	H10	O11	238.4	240.0
C2	C10	H10	C12	119.6	120.0
O11	C10	H10	C12	241.2	240.0
H10	C10	O11	H11	247.4	179.9
H10	C10	C12	N13	311.1	305.0
H10	C10	C12	H121	189.7	65.0
H10	C10	C12	H122	71.1	185.0
H11	O11	C10	C12	125.2	60.0
H11	O11	C10	H10	247.4	179.9
N13	C12	C10	H10	311.1	305.0
C10	C12	N13	H121	238.6	120.0
C10	C12	N13	H122	120.0	240.0
H121	C12	N13	H122	241.5	120.1
S14	N13	C12	H13	240.0	180.0
C12	N13	S14	O15	169.0	312.3
C12	N13	S14	O16	301.0	177.6
C12	N13	S14	C17	57.9	65.0
H121	C12	C10	H10	189.7	65.0
C10	C12	H121	N13	118.0	240.0
C10	C12	H121	H122	239.0	120.0
N13	C12	H121	H122	121.0	239.9
H121	C12	N13	S14	301.0	45.0
H121	C12	N13	H13	61.0	225.0
H122	C12	C10	H10	71.1	185.0
C10	C12	H122	N13	243.0	120.0
C10	C12	H122	H121	121.5	240.0
N13	C12	H122	H121	238.5	120.1
H122	C12	N13	S14	59.6	285.0
H122	C12	N13	H13	179.6	105.0
S14	N13	C12	H121	301.0	45.0
S14	N13	C12	H122	59.6	285.0
C12	N13	S14	H13	120.0	180.0
O15	S14	N13	O16	228.0	134.7
O15	S14	N13	C17	111.1	247.3
O16	S14	N13	C17	243.1	112.6
N13	S14	C17	C18	72.1	90.0
N13	S14	C17	C26	252.2	269.7
H13	N13	C12	H121	61.0	225.0
H13	N13	C12	H122	179.6	105.0
C12	N13	H13	S14	232.5	180.0
H13	N13	S14	O15	49.0	132.4
H13	N13	S14	O16	181.0	357.6
H13	N13	S14	C17	297.9	245.0
O15	S14	N13	H13	49.0	132.4
N13	S14	O15	O16	117.4	237.0
N13	S14	O15	C17	243.7	113.8
O16	S14	O15	C17	126.2	236.8
O15	S14	C17	C18	319.8	202.6
O15	S14	C17	C26	139.9	22.3
O16	S14	N13	H13	181.0	357.6
N13	S14	O16	O15	241.2	123.1
N13	S14	O16	C17	117.6	246.3
O15	S14	O16	C17	236.5	123.2
O16	S14	C17	C18	184.3	337.5
O16	S14	C17	C26	4.4	157.2
C17	S14	N13	H13	297.9	245.0
N13	S14	C17	O15	112.4	247.4
N13	S14	C17	O16	247.8	112.5
O15	S14	C17	O16	135.5	225.1
C18	C17	S14	C26	179.9	180.3
S14	C17	C18	C19	180.1	180.0
S14	C17	C18	H18	0.1	360.0
S14	C17	C26	C25	180.1	179.8
S14	C17	C26	H26	0.0	0.0
S14	C17	C18	C26	180.1	179.7
C18	C17	C26	C25	0.2	359.5
C18	C17	C26	H26	180.2	179.7
C19	C18	C17	H18	180.0	180.0
C17	C18	C19	C20	359.7	360.0
C17	C18	C19	H19	179.7	180.0
S14	C17	C26	C18	179.9	180.3
C26	C17	C18	C19	360.0	0.3
C26	C17	C18	H18	180.0	180.3
C20	C25	C26	C17	360.0	0.5
C24	C25	C26	C17	179.2	180.2
C25	C26	C17	H26	180.0	179.8
C19	C18	C17	C26	360.0	0.3
C17	C18	C19	H18	180.0	180.0
C20	C19	C18	H19	180.0	180.0
C18	C19	C20	C21	181.0	180.0
C18	C19	C20	C25	0.4	360.0
H18	C18	C17	C26	180.0	180.3
C17	C18	H18	C19	180.0	180.0
H18	C18	C19	C20	179.7	180.0
H18	C18	C19	H19	359.7	0.0
C20	C19	C18	H18	179.7	180.0
C18	C19	C20	H19	180.0	180.0
C21	C20	C19	C25	180.6	180.0
C19	C20	C21	C22	179.8	180.0
C19	C20	C21	H21	359.8	0.0
C19	C20	C25	C24	180.5	180.0
C19	C20	C25	C26	359.7	359.8
H19	C19	C18	H18	359.7	0.0
C18	C19	H19	C20	180.0	180.0
H19	C19	C20	C21	1.0	0.0
H19	C19	C20	C25	180.4	180.0
C21	C20	C19	H19	1.0	0.0
C19	C20	C21	C25	179.4	180.0
C21	C20	C25	C24	359.9	360.0
C21	C20	C25	C26	179.2	179.7
C22	C21	C20	H21	180.0	180.0
C20	C21	C22	C23	359.5	0.0
C20	C21	C22	H22	179.5	180.0
C17	C26	C25	C20	360.0	0.5
C25	C20	C19	H19	180.4	180.0
C19	C20	C25	C21	180.6	180.0
C25	C20	C21	C22	0.4	360.0
C25	C20	C21	H21	180.4	180.0
C23	C24	C25	C20	359.8	0.0
C20	C25	C24	H24	179.8	180.0
C24	C25	C20	C26	180.8	180.3
C20	C25	C26	H26	180.0	180.3
C22	C21	C20	C25	0.4	360.0
C20	C21	C22	H21	180.0	180.0
C23	C22	C21	H22	180.0	180.0
C21	C22	C23	C24	0.2	360.0
C21	C22	C23	H23	180.2	180.0
H21	C21	C20	C25	180.4	180.0
C20	C21	H21	C22	180.0	180.0
H21	C21	C22	C23	179.5	180.0
H21	C21	C22	H22	359.5	359.9
C23	C22	C21	H21	179.5	180.0
C21	C22	C23	H22	180.0	180.0
C24	C23	C22	H23	180.0	180.0
C22	C23	C24	C25	0.2	360.0
C22	C23	C24	H24	180.1	180.0
H22	C22	C21	H21	359.5	359.9
C21	C22	H22	C23	180.0	180.0
H22	C22	C23	C24	180.2	180.0
H22	C22	C23	H23	0.2	0.0
C20	C25	C24	C23	359.8	0.0
C24	C23	C22	H22	180.2	180.0
C22	C23	C24	H23	180.0	180.0
C25	C24	C23	H24	180.0	180.0
C23	C24	C25	C26	180.6	180.3
H23	C23	C22	H22	0.2	0.0
C22	C23	H23	C24	180.0	180.0
H23	C23	C24	C25	180.2	180.0
H23	C23	C24	H24	0.2	360.0
C17	C26	C25	C24	179.2	180.2
C20	C25	C24	C26	179.2	179.7
C25	C24	C23	H23	180.2	180.0
C23	C24	C25	H24	180.0	180.0
C24	C25	C26	H26	359.2	0.0
H24	C24	C23	H23	0.2	360.0
C23	C24	H24	C25	180.0	180.0
H24	C24	C25	C26	0.6	0.3
C17	C26	C25	H26	180.0	180.2
C20	C25	C26	C24	180.8	180.3
C26	C25	C24	H24	0.6	0.3
C17	C26	H26	C25	180.0	179.8