PDB Chemical Component C37
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C37
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3P |
P |
1.486 |
1.609 |
| O3P |
H3P |
0.950 |
0.968 |
| P |
O1P |
1.485 |
1.480 |
| P |
O2P |
1.616 |
1.609 |
| P |
O5' |
1.610 |
1.610 |
| O2P |
H2P |
0.950 |
0.965 |
| O5' |
C5' |
1.424 |
1.428 |
| C5' |
C4' |
1.574 |
1.530 |
| C5' |
H5'1 |
1.116 |
1.090 |
| C5' |
H5'2 |
1.115 |
1.090 |
| C4' |
O4' |
1.367 |
1.446 |
| C4' |
C3' |
1.504 |
1.549 |
| C4' |
H4' |
1.115 |
1.091 |
| O4' |
C1' |
1.388 |
1.436 |
| C3' |
O3' |
1.436 |
1.429 |
| C3' |
C2' |
1.524 |
1.547 |
| C3' |
H3' |
1.115 |
1.091 |
| O3' |
HA |
0.950 |
0.967 |
| C2' |
C1' |
1.451 |
1.541 |
| C2' |
H2'1 |
1.115 |
1.090 |
| C2' |
H2'2 |
1.115 |
1.089 |
| C1' |
N1 |
1.473 |
1.465 |
| C1' |
H1' |
1.115 |
1.090 |
| N1 |
C2 |
1.345 |
1.345 |
| N1 |
C6 |
1.358 |
1.365 |
| C2 |
O2 |
1.254 |
1.220 |
| C2 |
N3 |
1.392 |
1.332 |
| N3 |
C4 |
1.343 |
1.326 |
| C4 |
N4 |
1.365 |
1.377 |
| C4 |
C5 |
1.373 |
1.410 |
| N4 |
H4N1 |
1.020 |
0.971 |
| N4 |
H4N2 |
1.020 |
0.970 |
| C5 |
C6 |
1.316 |
1.354 |
| C5 |
F |
1.422 |
1.351 |
| C6 |
H6 |
1.103 |
1.080 |
Bond Angles for C37
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| P |
O3P |
H3P |
118.0 |
106.8 |
| O3P |
P |
O1P |
118.0 |
109.5 |
| O3P |
P |
O2P |
108.1 |
109.5 |
| O3P |
P |
O5' |
108.4 |
109.5 |
| O1P |
P |
O2P |
108.3 |
109.5 |
| O1P |
P |
O5' |
112.5 |
109.4 |
| O2P |
P |
O5' |
100.0 |
109.4 |
| P |
O2P |
H2P |
108.1 |
106.9 |
| P |
O5' |
C5' |
118.6 |
106.8 |
| O5' |
C5' |
C4' |
113.1 |
109.5 |
| O5' |
C5' |
H5'1 |
110.9 |
109.4 |
| O5' |
C5' |
H5'2 |
110.9 |
109.5 |
| C4' |
C5' |
H5'1 |
110.9 |
109.5 |
| C4' |
C5' |
H5'2 |
110.9 |
109.4 |
| C5' |
C4' |
O4' |
111.0 |
110.7 |
| C5' |
C4' |
C3' |
116.9 |
110.7 |
| C5' |
C4' |
H4' |
112.2 |
110.5 |
| H5'1 |
C5' |
H5'2 |
99.4 |
109.5 |
| O4' |
C4' |
C3' |
90.7 |
103.6 |
| O4' |
C4' |
H4' |
112.2 |
110.5 |
| C4' |
O4' |
C1' |
103.9 |
106.8 |
| C3' |
C4' |
H4' |
112.2 |
110.6 |
| C4' |
C3' |
O3' |
107.9 |
110.9 |
| C4' |
C3' |
C2' |
104.2 |
102.1 |
| C4' |
C3' |
H3' |
111.1 |
110.9 |
| O4' |
C1' |
C2' |
99.6 |
107.5 |
| O4' |
C1' |
N1 |
105.3 |
109.8 |
| O4' |
C1' |
H1' |
111.6 |
109.9 |
| O3' |
C3' |
C2' |
111.5 |
110.9 |
| O3' |
C3' |
H3' |
111.0 |
110.8 |
| C3' |
O3' |
HA |
107.9 |
106.8 |
| C2' |
C3' |
H3' |
111.0 |
110.9 |
| C3' |
C2' |
C1' |
100.2 |
104.2 |
| C3' |
C2' |
H2'1 |
115.8 |
110.4 |
| C3' |
C2' |
H2'2 |
115.8 |
110.5 |
| C1' |
C2' |
H2'1 |
115.8 |
110.5 |
| C1' |
C2' |
H2'2 |
115.8 |
110.5 |
| C2' |
C1' |
N1 |
116.5 |
109.9 |
| C2' |
C1' |
H1' |
111.5 |
109.9 |
| H2'1 |
C2' |
H2'2 |
94.7 |
110.6 |
| N1 |
C1' |
H1' |
111.5 |
109.9 |
| C1' |
N1 |
C2 |
118.7 |
119.8 |
| C1' |
N1 |
C6 |
121.6 |
119.8 |
| C2 |
N1 |
C6 |
119.4 |
120.3 |
| N1 |
C2 |
O2 |
118.6 |
119.5 |
| N1 |
C2 |
N3 |
115.7 |
121.1 |
| N1 |
C6 |
C5 |
124.0 |
119.2 |
| N1 |
C6 |
H6 |
118.0 |
120.3 |
| O2 |
C2 |
N3 |
125.7 |
119.4 |
| C2 |
N3 |
C4 |
125.1 |
120.7 |
| N3 |
C4 |
N4 |
123.4 |
120.2 |
| N3 |
C4 |
C5 |
116.4 |
119.6 |
| N4 |
C4 |
C5 |
120.1 |
120.2 |
| C4 |
N4 |
H4N1 |
123.5 |
120.0 |
| C4 |
N4 |
H4N2 |
120.1 |
120.0 |
| C4 |
C5 |
C6 |
119.3 |
119.0 |
| C4 |
C5 |
F |
124.1 |
120.5 |
| H4N1 |
N4 |
H4N2 |
116.4 |
120.0 |
| C6 |
C5 |
F |
115.9 |
120.5 |
| C5 |
C6 |
H6 |
118.0 |
120.4 |
Torsion Angles for C37
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1P |
P |
O3P |
O2P |
236.8 |
240.0 |
| O1P |
P |
O3P |
O5' |
129.4 |
120.0 |
| O2P |
P |
O3P |
O5' |
252.5 |
240.0 |
| O3P |
P |
O2P |
H2P |
180.0 |
60.0 |
| O3P |
P |
O5' |
C5' |
203.1 |
180.0 |
| H3P |
O3P |
P |
O1P |
180.0 |
300.0 |
| H3P |
O3P |
P |
O2P |
303.2 |
60.1 |
| H3P |
O3P |
P |
O5' |
50.6 |
180.0 |
| O1P |
P |
O3P |
H3P |
180.0 |
300.0 |
| O3P |
P |
O1P |
O2P |
123.1 |
120.0 |
| O3P |
P |
O1P |
O5' |
232.6 |
240.0 |
| O2P |
P |
O1P |
O5' |
109.5 |
120.0 |
| O1P |
P |
O2P |
H2P |
308.9 |
180.0 |
| O1P |
P |
O5' |
C5' |
70.8 |
59.9 |
| O2P |
P |
O3P |
H3P |
303.2 |
60.1 |
| O3P |
P |
O2P |
O1P |
231.1 |
239.9 |
| O3P |
P |
O2P |
O5' |
113.2 |
120.0 |
| O1P |
P |
O2P |
O5' |
242.1 |
240.0 |
| O2P |
P |
O5' |
C5' |
316.1 |
299.9 |
| O5' |
P |
O3P |
H3P |
50.6 |
180.0 |
| O3P |
P |
O5' |
O1P |
132.4 |
120.0 |
| O3P |
P |
O5' |
O2P |
247.0 |
240.0 |
| O1P |
P |
O5' |
O2P |
114.7 |
120.0 |
| O5' |
P |
O2P |
H2P |
66.8 |
300.0 |
| P |
O5' |
C5' |
C4' |
144.2 |
180.0 |
| P |
O5' |
C5' |
H5'1 |
18.9 |
60.0 |
| P |
O5' |
C5' |
H5'2 |
269.5 |
300.0 |
| H2P |
O2P |
P |
O5' |
66.8 |
300.0 |
| C4' |
C5' |
O5' |
H5'1 |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
H5'2 |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
O4' |
324.6 |
65.7 |
| O5' |
C5' |
C4' |
C3' |
66.6 |
180.1 |
| O5' |
C5' |
C4' |
H4' |
198.2 |
302.9 |
| H5'1 |
C5' |
O5' |
H5'2 |
109.5 |
120.0 |
| O5' |
C5' |
C4' |
H5'1 |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
H5'2 |
125.3 |
120.1 |
| H5'1 |
C5' |
C4' |
H5'2 |
250.6 |
240.1 |
| O4' |
C4' |
C5' |
C3' |
257.9 |
245.7 |
| O4' |
C4' |
C5' |
H4' |
126.4 |
122.8 |
| C5' |
C4' |
O4' |
C1' |
182.5 |
158.6 |
| C3' |
C4' |
C5' |
H4' |
228.4 |
237.1 |
| C5' |
C4' |
C3' |
O3' |
83.9 |
86.1 |
| C5' |
C4' |
C3' |
C2' |
202.5 |
204.3 |
| C5' |
C4' |
C3' |
H3' |
322.1 |
322.5 |
| O5' |
C5' |
H5'1 |
C4' |
126.5 |
120.1 |
| O5' |
C5' |
H5'1 |
H5'2 |
243.2 |
240.0 |
| C4' |
C5' |
H5'1 |
H5'2 |
116.7 |
119.9 |
| H5'1 |
C5' |
C4' |
O4' |
89.9 |
185.7 |
| H5'1 |
C5' |
C4' |
C3' |
191.9 |
300.0 |
| H5'1 |
C5' |
C4' |
H4' |
323.5 |
62.9 |
| O5' |
C5' |
H5'2 |
C4' |
233.5 |
239.9 |
| O5' |
C5' |
H5'2 |
H5'1 |
116.8 |
120.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
243.2 |
240.1 |
| H5'2 |
C5' |
C4' |
O4' |
199.3 |
305.6 |
| H5'2 |
C5' |
C4' |
C3' |
301.4 |
60.0 |
| H5'2 |
C5' |
C4' |
H4' |
73.0 |
182.8 |
| O4' |
C4' |
C5' |
H5'1 |
89.9 |
185.7 |
| O4' |
C4' |
C5' |
H5'2 |
199.3 |
305.6 |
| C5' |
C4' |
O4' |
C3' |
119.2 |
118.7 |
| C5' |
C4' |
O4' |
H4' |
233.7 |
237.2 |
| C3' |
C4' |
O4' |
H4' |
114.4 |
118.5 |
| O4' |
C4' |
C3' |
O3' |
198.0 |
204.8 |
| O4' |
C4' |
C3' |
C2' |
316.6 |
323.1 |
| O4' |
C4' |
C3' |
H3' |
76.1 |
81.3 |
| C4' |
O4' |
C1' |
C2' |
300.7 |
333.6 |
| C4' |
O4' |
C1' |
N1 |
179.7 |
214.2 |
| C4' |
O4' |
C1' |
H1' |
58.5 |
93.2 |
| C3' |
C4' |
C5' |
H5'1 |
191.9 |
300.0 |
| C3' |
C4' |
C5' |
H5'2 |
301.4 |
60.0 |
| C5' |
C4' |
C3' |
O4' |
245.9 |
241.2 |
| C5' |
C4' |
C3' |
H4' |
131.6 |
122.8 |
| O4' |
C4' |
C3' |
H4' |
245.6 |
241.6 |
| C3' |
C4' |
O4' |
C1' |
63.2 |
39.9 |
| O3' |
C3' |
C4' |
C2' |
241.4 |
241.7 |
| O3' |
C3' |
C4' |
H3' |
121.9 |
123.5 |
| C4' |
C3' |
O3' |
HA |
180.0 |
174.2 |
| C2' |
C3' |
C4' |
H3' |
240.4 |
241.8 |
| C4' |
C3' |
C2' |
C1' |
12.1 |
20.8 |
| C4' |
C3' |
C2' |
H2'1 |
246.9 |
262.2 |
| C4' |
C3' |
C2' |
H2'2 |
137.4 |
139.5 |
| H4' |
C4' |
C5' |
H5'1 |
323.5 |
62.9 |
| H4' |
C4' |
C5' |
H5'2 |
73.0 |
182.8 |
| C5' |
C4' |
H4' |
O4' |
125.7 |
122.9 |
| C5' |
C4' |
H4' |
C3' |
226.1 |
237.1 |
| O4' |
C4' |
H4' |
C3' |
100.4 |
114.1 |
| H4' |
C4' |
O4' |
C1' |
308.8 |
281.4 |
| H4' |
C4' |
C3' |
O3' |
312.4 |
323.2 |
| H4' |
C4' |
C3' |
C2' |
71.0 |
81.5 |
| H4' |
C4' |
C3' |
H3' |
190.5 |
199.7 |
| C1' |
O4' |
C4' |
C3' |
63.2 |
39.9 |
| C1' |
O4' |
C4' |
H4' |
308.8 |
281.4 |
| C3' |
C2' |
C1' |
O4' |
24.0 |
2.0 |
| O4' |
C1' |
C2' |
H2'1 |
149.3 |
120.6 |
| O4' |
C1' |
C2' |
H2'2 |
258.8 |
243.3 |
| C2' |
C1' |
O4' |
N1 |
121.0 |
119.5 |
| C2' |
C1' |
O4' |
H1' |
242.1 |
240.5 |
| N1 |
C1' |
O4' |
H1' |
121.2 |
121.0 |
| O4' |
C1' |
N1 |
C2 |
186.4 |
58.3 |
| O4' |
C1' |
N1 |
C6 |
0.4 |
238.3 |
| O3' |
C3' |
C4' |
H4' |
312.4 |
323.2 |
| C4' |
C3' |
O3' |
C2' |
113.8 |
112.8 |
| C4' |
C3' |
O3' |
H3' |
238.1 |
236.4 |
| C2' |
C3' |
O3' |
H3' |
124.3 |
123.6 |
| O3' |
C3' |
C2' |
C1' |
128.2 |
139.1 |
| O3' |
C3' |
C2' |
H2'1 |
2.9 |
20.5 |
| O3' |
C3' |
C2' |
H2'2 |
253.4 |
257.8 |
| C2' |
C3' |
C4' |
H4' |
71.0 |
81.5 |
| C4' |
C3' |
C2' |
O3' |
243.9 |
241.7 |
| C4' |
C3' |
C2' |
H3' |
119.6 |
118.2 |
| O4' |
C1' |
C2' |
C3' |
24.0 |
2.0 |
| O3' |
C3' |
C2' |
H3' |
235.7 |
236.4 |
| C2' |
C3' |
O3' |
HA |
66.2 |
61.5 |
| C1' |
C2' |
C3' |
H2'1 |
125.2 |
118.6 |
| C1' |
C2' |
C3' |
H2'2 |
234.7 |
241.3 |
| C3' |
C2' |
C1' |
N1 |
136.5 |
121.5 |
| C3' |
C2' |
C1' |
H1' |
266.2 |
242.4 |
| H2'1 |
C2' |
C3' |
H2'2 |
109.5 |
122.7 |
| H3' |
C3' |
C4' |
H4' |
190.5 |
199.7 |
| C4' |
C3' |
H3' |
O3' |
120.0 |
123.6 |
| C4' |
C3' |
H3' |
C2' |
244.6 |
247.3 |
| O3' |
C3' |
H3' |
C2' |
124.6 |
123.7 |
| H3' |
C3' |
O3' |
HA |
301.8 |
297.8 |
| H3' |
C3' |
C2' |
C1' |
252.5 |
262.7 |
| H3' |
C3' |
C2' |
H2'1 |
127.3 |
144.1 |
| H3' |
C3' |
C2' |
H2'2 |
17.8 |
21.4 |
| HA |
O3' |
C3' |
C2' |
66.2 |
61.5 |
| HA |
O3' |
C3' |
H3' |
301.8 |
297.8 |
| O4' |
C1' |
C2' |
N1 |
247.5 |
240.6 |
| O4' |
C1' |
C2' |
H1' |
117.9 |
119.6 |
| C1' |
C2' |
C3' |
H3' |
252.5 |
262.7 |
| C3' |
C2' |
C1' |
H2'1 |
234.7 |
241.4 |
| C3' |
C2' |
C1' |
H2'2 |
125.3 |
118.7 |
| H2'1 |
C2' |
C1' |
H2'2 |
250.5 |
237.3 |
| N1 |
C1' |
C2' |
H1' |
230.4 |
239.0 |
| C2' |
C1' |
N1 |
C2 |
77.1 |
300.4 |
| C2' |
C1' |
N1 |
C6 |
251.2 |
120.3 |
| H2'1 |
C2' |
C3' |
H3' |
127.3 |
144.1 |
| C3' |
C2' |
H2'1 |
C1' |
116.8 |
114.7 |
| C3' |
C2' |
H2'1 |
H2'2 |
238.4 |
237.3 |
| C1' |
C2' |
H2'1 |
H2'2 |
121.6 |
122.7 |
| H2'1 |
C2' |
C1' |
N1 |
261.8 |
240.1 |
| H2'1 |
C2' |
C1' |
H1' |
31.4 |
1.0 |
| H2'2 |
C2' |
C3' |
H3' |
17.8 |
21.4 |
| C3' |
C2' |
H2'2 |
C1' |
243.2 |
245.2 |
| C3' |
C2' |
H2'2 |
H2'1 |
121.6 |
122.6 |
| C1' |
C2' |
H2'2 |
H2'1 |
238.4 |
237.4 |
| H2'2 |
C2' |
C1' |
N1 |
11.3 |
2.8 |
| H2'2 |
C2' |
C1' |
H1' |
140.9 |
123.7 |
| O4' |
C1' |
N1 |
C2' |
109.2 |
118.0 |
| O4' |
C1' |
N1 |
H1' |
238.8 |
239.0 |
| N1 |
C1' |
C2' |
H2'1 |
261.8 |
240.1 |
| N1 |
C1' |
C2' |
H2'2 |
11.3 |
2.8 |
| C2' |
C1' |
N1 |
H1' |
129.6 |
121.0 |
| C2 |
N1 |
C1' |
C6 |
185.9 |
180.1 |
| C1' |
N1 |
C2 |
O2 |
354.0 |
359.8 |
| C1' |
N1 |
C2 |
N3 |
173.8 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
186.8 |
179.8 |
| C1' |
N1 |
C6 |
H6 |
6.8 |
360.0 |
| O4' |
C1' |
H1' |
C2' |
249.6 |
241.9 |
| O4' |
C1' |
H1' |
N1 |
117.4 |
121.0 |
| H1' |
C1' |
C2' |
H2'1 |
31.4 |
1.0 |
| H1' |
C1' |
C2' |
H2'2 |
140.9 |
123.7 |
| C2' |
C1' |
H1' |
N1 |
227.9 |
239.0 |
| H1' |
C1' |
N1 |
C2 |
307.5 |
179.4 |
| H1' |
C1' |
N1 |
C6 |
121.6 |
359.3 |
| C2 |
N1 |
C1' |
H1' |
307.5 |
179.4 |
| C1' |
N1 |
C2 |
C6 |
174.2 |
179.9 |
| C2 |
N1 |
C6 |
C5 |
0.8 |
359.7 |
| C2 |
N1 |
C6 |
H6 |
180.8 |
179.9 |
| O2 |
C2 |
N1 |
N3 |
180.2 |
179.9 |
| N1 |
C2 |
N3 |
C4 |
0.0 |
360.0 |
| C6 |
N1 |
C1' |
H1' |
121.6 |
359.3 |
| C1' |
N1 |
C6 |
C2 |
186.0 |
180.1 |
| C6 |
N1 |
C2 |
O2 |
179.8 |
179.9 |
| C6 |
N1 |
C2 |
N3 |
359.6 |
0.0 |
| C4 |
C5 |
C6 |
N1 |
359.3 |
0.5 |
| N1 |
C6 |
C5 |
F |
170.3 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.8 |
| O2 |
C2 |
N1 |
C6 |
179.8 |
179.9 |
| N1 |
C2 |
O2 |
N3 |
179.8 |
180.1 |
| O2 |
C2 |
N3 |
C4 |
179.8 |
180.1 |
| N3 |
C2 |
N1 |
C6 |
359.6 |
0.0 |
| N1 |
C2 |
N3 |
O2 |
180.2 |
179.9 |
| C2 |
N3 |
C4 |
N4 |
179.0 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.0 |
0.2 |
| N4 |
C4 |
N3 |
C5 |
179.0 |
179.7 |
| N3 |
C4 |
N4 |
H4N1 |
180.0 |
360.0 |
| N3 |
C4 |
N4 |
H4N2 |
1.1 |
179.7 |
| N3 |
C4 |
C5 |
C6 |
0.3 |
359.5 |
| N3 |
C4 |
C5 |
F |
190.0 |
180.0 |
| N3 |
C4 |
N4 |
C5 |
181.1 |
180.3 |
| N4 |
C4 |
C5 |
C6 |
181.3 |
179.8 |
| N4 |
C4 |
C5 |
F |
11.0 |
0.3 |
| H4N1 |
N4 |
C4 |
H4N2 |
178.9 |
180.2 |
| N1 |
C6 |
C5 |
C4 |
359.3 |
0.5 |
| N3 |
C4 |
C5 |
N4 |
179.0 |
179.7 |
| C5 |
C4 |
N4 |
H4N1 |
358.9 |
179.7 |
| C5 |
C4 |
N4 |
H4N2 |
180.0 |
359.5 |
| C6 |
C5 |
C4 |
F |
170.3 |
179.5 |
| C4 |
C5 |
C6 |
H6 |
179.3 |
180.3 |
| H4N1 |
N4 |
C4 |
C5 |
358.9 |
179.7 |
| C4 |
N4 |
H4N1 |
H4N2 |
181.1 |
179.8 |
| H4N2 |
N4 |
C4 |
C5 |
180.0 |
359.5 |
| C4 |
N4 |
H4N2 |
H4N1 |
179.0 |
180.2 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
| C4 |
C5 |
C6 |
F |
189.0 |
180.5 |
| C4 |
C5 |
F |
C6 |
170.6 |
179.5 |
| F |
C5 |
C6 |
H6 |
350.3 |
359.8 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.8 |
| H6 |
C6 |
C5 |
F |
350.3 |
359.8 |