PDB Chemical Component C36

Ideal Model

Chemical Description

Name 5-METHYL-5-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Formula C10 H17 F N3 O8 P
Formal charge 0
Molecular weight 357.229 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 40
Chiral atom count 4
Chiral atoms C4' C3' C1' C5
Observed leaving atoms O3P
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-fluoro-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[(5R)-4-amino-5-fluoro-5-(hydroxymethyl)-2-oxo-6H-pyrimidin-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C[C@@]1(F)CO)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C[C]1(F)CO)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C[C@@](C(=NC2=O)N)(CO)F)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H17FN3O8P/c11-10(4-15)3-14(9(17)13-8(10)12)7-1-5(16)6(22-7)2-21-23(18,19)20/h5-7,15-16H,1-4H2,(H2,12,13,17)(H2,18,19,20)/t5-,6+,7+,10+/m0/s1
InChIKey descriptor LOMGOHXNFAWKHS-MPXCPUAZSA-N

Status Information

Last modified 2011-06-04
Created 1995-06-03
Release status REL
Model PDB code 1MHT
Processing site RCSB