PDB Chemical Component C36

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C36

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OXT C   1.415
OXT HXT   0.972
O3P P 1.507 1.618
O3P H3P 0.949 0.980
P O1P 1.498 1.500
P O2P 1.594 1.617
P O5' 1.564 1.620
O2P H2P 0.950 0.981
O5' C5' 1.406 1.417
C5' C4' 1.580 1.523
C5' H5'1 1.115 1.091
C5' H5'2 1.115 1.090
C4' O4' 1.434 1.441
C4' C3' 1.529 1.522
C4' H4' 1.115 1.094
O4' C1' 1.418 1.438
C3' O3' 1.447 1.426
C3' C2' 1.527 1.512
C3' H3' 1.115 1.093
O3' HA 0.950 0.970
C2' C1' 1.471 1.523
C2' H2'1 1.115 1.097
C2' H2'2 1.115 1.096
C1' N1 1.515 1.466
C1' H1' 1.115 1.096
N1 C2 1.430 1.577
N1 C6 1.333 1.463
C2 O2 1.241 1.222
C2 N3 1.397 1.368
N3 C4 1.351 1.303
C4 N4 1.330 1.373
C4 C5 1.391 1.523
N4 H4N1 1.020 0.992
N4 H4N2 1.020 0.992
C5 C6 1.313 1.517
C5 F 1.185 1.370
C5 C 1.092 1.527
C6 H6 1.103 1.095
HC1 C 1.100 1.090
HC2 C6 1.100 1.095
HC3 C 1.100 1.090

Bond Angles for C36

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C OXT HXT   107.1
OXT C C5   108.5
P O3P H3P 117.8 118.9
O3P P O1P 117.8 115.3
O3P P O2P 110.3 103.3
O3P P O5' 108.9 103.7
O1P P O2P 108.4 115.0
O1P P O5' 111.5 114.9
O2P P O5' 98.2 102.9
P O2P H2P 110.3 119.0
P O5' C5' 122.5 118.5
O5' C5' C4' 110.0 108.6
O5' C5' H5'1 112.0 109.2
O5' C5' H5'2 112.0 109.2
C4' C5' H5'1 112.0 110.1
C4' C5' H5'2 112.0 110.1
C5' C4' O4' 113.3 107.9
C5' C4' C3' 110.6 112.9
C5' C4' H4' 110.9 109.4
H5'1 C5' H5'2 98.4 109.6
O4' C4' C3' 99.8 106.3
O4' C4' H4' 110.9 107.9
C4' O4' C1' 111.1 109.3
C3' C4' H4' 110.9 112.2
C4' C3' O3' 108.9 108.7
C4' C3' C2' 100.7 102.9
C4' C3' H3' 112.1 114.0
O4' C1' C2' 104.5 106.7
O4' C1' N1 109.5 117.1
O4' C1' H1' 109.1 107.2
O3' C3' C2' 110.1 109.4
O3' C3' H3' 112.2 108.0
C3' O3' HA 109.0 106.5
C2' C3' H3' 112.2 113.8
C3' C2' C1' 106.5 102.2
C3' C2' H2'1 113.3 109.4
C3' C2' H2'2 113.3 113.6
C1' C2' H2'1 113.3 111.3
C1' C2' H2'2 113.3 111.8
C2' C1' N1 115.5 108.9
C2' C1' H1' 109.1 110.7
H2'1 C2' H2'2 97.2 108.4
N1 C1' H1' 109.1 106.2
C1' N1 C2 115.9 118.5
C1' N1 C6 123.7 123.6
C2 N1 C6 119.0 117.9
N1 C2 O2 121.5 116.3
N1 C2 N3 118.0 116.2
N1 C6 C5 118.0 109.6
N1 C6 H6 121.0 107.3
O2 C2 N3 120.4 127.4
C2 N3 C4 119.2 121.6
N3 C4 N4 121.3 121.9
N3 C4 C5 116.2 122.0
N4 C4 C5 112.7 116.1
C4 N4 H4N1 105.9 118.2
C4 N4 H4N2 105.9 118.2
C4 C5 C6 124.6 109.5
C4 C5 F 98.3 110.2
C4 C5 C 67.8 110.1
H4N1 N4 H4N2 103.5 123.7
C6 C5 F 135.6 106.6
C6 C5 C 112.7 113.7
C5 C6 H6 121.0 111.4
F C5 C 70.6 106.6

Torsion Angles for C36

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4 C5 C OXT   299.6
C6 C5 C OXT   176.3
F C5 C OXT   59.0
HXT OXT C C5   350.3
O1P P O3P O2P 234.8 126.3
O1P P O3P O5' 128.1 233.4
O2P P O3P O5' 253.3 107.1
O3P P O2P H2P 180.0 78.5
O3P P O5' C5' 149.2 53.2
H3P O3P P O1P 180.0 48.8
H3P O3P P O2P 305.1 282.5
H3P O3P P O5' 51.8 175.4
O1P P O3P H3P 180.0 48.8
O3P P O1P O2P 126.1 239.9
O3P P O1P O5' 233.1 120.6
O2P P O1P O5' 107.0 240.7
O1P P O2P H2P 310.3 311.9
O1P P O5' C5' 17.6 180.0
O2P P O3P H3P 305.1 282.5
O3P P O2P O1P 229.7 126.5
O3P P O2P O5' 113.7 252.3
O1P P O2P O5' 244.0 125.8
O2P P O5' C5' 264.0 305.8
O5' P O3P H3P 51.8 175.4
O3P P O5' O1P 131.6 233.2
O3P P O5' O2P 245.2 107.4
O1P P O5' O2P 113.6 234.2
O5' P O2P H2P 66.3 186.2
P O5' C5' C4' 206.1 180.0
P O5' C5' H5'1 80.8 300.1
P O5' C5' H5'2 331.4 59.9
H2P O2P P O5' 66.3 186.2
C4' C5' O5' H5'1 125.3 240.0
C4' C5' O5' H5'2 234.7 120.1
O5' C5' C4' O4' 73.3 62.4
O5' C5' C4' C3' 184.5 179.6
O5' C5' C4' H4' 307.9 305.3
H5'1 C5' O5' H5'2 109.5 240.1
O5' C5' C4' H5'1 234.8 119.5
O5' C5' C4' H5'2 125.3 240.5
H5'1 C5' C4' H5'2 250.5 121.0
O4' C4' C5' C3' 248.9 242.8
O4' C4' C5' H4' 125.4 117.1
C5' C4' O4' C1' 156.4 110.5
C3' C4' C5' H4' 236.6 234.3
C5' C4' C3' O3' 85.1 155.1
C5' C4' C3' C2' 200.9 271.0
C5' C4' C3' H3' 320.3 34.7
O5' C5' H5'1 C4' 124.1 240.9
O5' C5' H5'1 H5'2 242.1 119.6
C4' C5' H5'1 H5'2 117.9 238.7
H5'1 C5' C4' O4' 198.6 302.9
H5'1 C5' C4' C3' 309.7 60.1
H5'1 C5' C4' H4' 73.1 185.8
O5' C5' H5'2 C4' 235.9 119.2
O5' C5' H5'2 H5'1 117.9 240.4
C4' C5' H5'2 H5'1 242.0 121.2
H5'2 C5' C4' O4' 308.1 181.9
H5'2 C5' C4' C3' 59.2 299.1
H5'2 C5' C4' H4' 182.6 64.8
O4' C4' C5' H5'1 198.6 302.9
O4' C4' C5' H5'2 308.1 181.9
C5' C4' O4' C3' 117.6 121.4
C5' C4' O4' H4' 234.5 242.0
C3' C4' O4' H4' 117.0 120.6
O4' C4' C3' O3' 204.7 273.2
O4' C4' C3' C2' 320.5 29.2
O4' C4' C3' H3' 79.9 152.8
C4' O4' C1' C2' 339.5 348.2
C4' O4' C1' N1 215.2 226.0
C4' O4' C1' H1' 96.0 106.9
C3' C4' C5' H5'1 309.7 60.1
C3' C4' C5' H5'2 59.2 299.1
C5' C4' C3' O4' 240.4 241.9
C5' C4' C3' H4' 123.4 124.2
O4' C4' C3' H4' 243.1 242.3
C3' C4' O4' C1' 38.8 349.0
O3' C3' C4' C2' 244.2 244.1
O3' C3' C4' H3' 124.8 120.4
C4' C3' O3' HA 180.0 157.7
C2' C3' C4' H3' 240.6 236.4
C4' C3' C2' C1' 29.4 325.1
C4' C3' C2' H2'1 264.1 83.1
C4' C3' C2' H2'2 154.6 204.5
H4' C4' C5' H5'1 73.1 185.8
H4' C4' C5' H5'2 182.6 64.8
C5' C4' H4' O4' 126.8 117.1
C5' C4' H4' C3' 236.8 233.9
O4' C4' H4' C3' 110.0 116.8
H4' C4' O4' C1' 281.8 228.5
H4' C4' C3' O3' 321.7 30.9
H4' C4' C3' C2' 77.4 146.9
H4' C4' C3' H3' 196.9 270.5
C1' O4' C4' C3' 38.8 349.0
C1' O4' C4' H4' 281.8 228.5
C3' C2' C1' O4' 352.9 29.5
O4' C1' C2' H2'1 118.1 272.8
O4' C1' C2' H2'2 227.6 151.3
C2' C1' O4' N1 124.3 122.3
C2' C1' O4' H1' 243.5 241.4
N1 C1' O4' H1' 119.2 119.1
O4' C1' N1 C2 294.8 325.8
O4' C1' N1 C6 101.4 145.5
O3' C3' C4' H4' 321.7 30.9
C4' C3' O3' C2' 109.6 111.6
C4' C3' O3' H3' 235.2 235.9
C2' C3' O3' H3' 125.7 124.3
O3' C3' C2' C1' 144.3 80.4
O3' C3' C2' H2'1 19.0 198.5
O3' C3' C2' H2'2 269.5 319.8
C2' C3' C4' H4' 77.4 146.9
C4' C3' C2' O3' 245.1 244.6
C4' C3' C2' H3' 119.4 123.8
O4' C1' C2' C3' 352.9 29.5
O3' C3' C2' H3' 234.3 239.2
C2' C3' O3' HA 70.5 46.1
C1' C2' C3' H2'1 125.3 241.9
C1' C2' C3' H2'2 234.7 120.6
C3' C2' C1' N1 113.1 156.8
C3' C2' C1' H1' 236.4 273.2
H2'1 C2' C3' H2'2 109.5 238.7
H3' C3' C4' H4' 196.9 270.5
C4' C3' H3' O3' 123.0 120.8
C4' C3' H3' C2' 247.5 242.5
O3' C3' H3' C2' 124.5 121.7
H3' C3' O3' HA 304.8 281.8
H3' C3' C2' C1' 269.9 201.3
H3' C3' C2' H2'1 144.7 319.4
H3' C3' C2' H2'2 35.2 80.7
HA O3' C3' C2' 70.5 46.1
HA O3' C3' H3' 304.8 281.8
O4' C1' C2' N1 239.7 232.7
O4' C1' C2' H1' 116.5 116.3
C1' C2' C3' H3' 269.9 201.3
C3' C2' C1' H2'1 234.7 116.7
C3' C2' C1' H2'2 125.2 238.2
H2'1 C2' C1' H2'2 250.5 121.4
N1 C1' C2' H1' 236.8 243.6
C2' C1' N1 C2 177.2 204.7
C2' C1' N1 C6 343.9 24.4
H2'1 C2' C3' H3' 144.7 319.4
C3' C2' H2'1 C1' 121.6 247.8
C3' C2' H2'1 H2'2 240.8 124.4
C1' C2' H2'1 H2'2 119.2 236.6
H2'1 C2' C1' N1 238.4 40.0
H2'1 C2' C1' H1' 1.7 156.5
H2'2 C2' C3' H3' 35.2 80.7
C3' C2' H2'2 C1' 238.5 115.0
C3' C2' H2'2 H2'1 119.2 238.1
C1' C2' H2'2 H2'1 240.8 123.1
H2'2 C2' C1' N1 347.9 278.6
H2'2 C2' C1' H1' 111.1 35.0
O4' C1' N1 C2' 117.5 121.1
O4' C1' N1 H1' 240.8 240.4
N1 C1' C2' H2'1 238.4 40.0
N1 C1' C2' H2'2 347.9 278.6
C2' C1' N1 H1' 123.2 119.2
C2 N1 C1' C6 193.3 180.3
C1' N1 C2 O2 8.9 1.8
C1' N1 C2 N3 186.2 183.5
C1' N1 C6 C5 176.8 213.8
C1' N1 C6 H6 356.8 92.7
O4' C1' H1' C2' 246.5 244.0
O4' C1' H1' N1 119.5 125.9
H1' C1' C2' H2'1 1.7 156.5
H1' C1' C2' H2'2 111.1 35.0
C2' C1' H1' N1 233.0 241.9
H1' C1' N1 C2 54.0 85.4
H1' C1' N1 C6 220.6 265.1
C2 N1 C1' H1' 54.0 85.4
C1' N1 C2 C6 167.3 179.7
C2 N1 C6 C5 343.1 33.5
C2 N1 C6 H6 163.0 272.4
O2 C2 N1 N3 182.7 178.4
N1 C2 N3 C4 358.6 337.8
C6 N1 C1' H1' 220.6 265.1
C1' N1 C6 C2 193.7 180.3
C6 N1 C2 O2 201.6 182.1
C6 N1 C2 N3 18.9 3.7
C4 C5 C6 N1 357.8 307.7
N1 C6 C5 F 195.0 188.5
N1 C6 C5 C 279.9 71.3
C5 C6 N1 H6 180.0 121.1
O2 C2 N1 C6 201.6 182.1
N1 C2 O2 N3 177.3 181.8
O2 C2 N3 C4 175.9 159.6
N3 C2 N1 C6 18.9 3.7
N1 C2 N3 O2 182.6 178.2
C2 N3 C4 N4 200.5 180.9
C2 N3 C4 C5 343.7 359.9
N4 C4 N3 C5 216.7 181.0
N3 C4 N4 H4N1 180.9 355.0
N3 C4 N4 H4N2 71.4 175.0
N3 C4 C5 C6 19.4 39.4
N3 C4 C5 F 187.3 156.4
N3 C4 C5 C 122.3 273.7
N3 C4 N4 C5 144.4 179.0
N4 C4 C5 C6 165.7 218.4
N4 C4 C5 F 333.7 335.4
N4 C4 C5 C 268.7 92.8
H4N1 N4 C4 H4N2 109.5 180.0
OXT C C5 C4   299.6
N1 C6 C5 C4 357.8 307.7
N3 C4 C5 N4 213.6 181.0
C5 C4 N4 H4N1 36.5 175.9
C5 C4 N4 H4N2 287.0 355.9
C6 C5 C4 F 192.0 243.0
C6 C5 C4 C 257.0 125.7
C4 C5 C6 H6 177.8 66.3
F C5 C4 C 65.0 242.7
H4N1 N4 C4 C5 36.5 175.9
C4 N4 H4N1 H4N2 248.8 180.0
H4N2 N4 C4 C5 287.0 355.9
C4 N4 H4N2 H4N1 111.2 180.0
OXT C C5 C6   176.3
N1 C6 C5 H6 180.0 241.4
C4 C5 C6 F 162.8 119.2
C4 C5 C6 C 77.9 236.4
F C5 C6 C 275.0 117.2
OXT C C5 F   59.0
C4 C5 F C6 194.2 241.2
C4 C5 F C 297.2 119.4
C6 C5 F C 103.0 238.2
F C5 C6 H6 15.0 307.1
C5 C OXT HXT   350.3
C4 C5 C C6 240.4 123.3
C4 C5 C F 108.1 240.5
C6 C5 C F 227.6 117.2
C C5 C6 H6 100.0 189.9
N1 C6 H6 C5 180.0 119.9
H6 C6 C5 F 15.0 307.1
H6 C6 C5 C 100.0 189.9