PDB Chemical Component C34

Ideal Model

Chemical Description

Name N4-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Formula C10 H16 N3 O7 P
Formal charge 0
Molecular weight 321.224 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-methylcytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-(4-methylamino-2-oxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CNC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) CNC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) CNC1=NC(=O)N(C=C1)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H16N3O7P/c1-11-8-2-3-13(10(15)12-8)9-4-6(14)7(20-9)5-19-21(16,17)18/h2-3,6-7,9,14H,4-5H2,1H3,(H,11,12,15)(H2,16,17,18)/t6-,7+,9+/m0/s1
InChIKey descriptor RJSNFYLMWHHPIJ-LKEWCRSYSA-N

Status Information

Last modified 2011-06-04
Created 1994-01-31
Release status REL
Model PDB code 133D
Processing site RCSB