PDB Chemical Component C34

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C34

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.509 1.480
P OP2 1.512 1.610
P OP3 1.578 1.609
P O5' 1.598 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.453 1.427
C5' C4' 1.525 1.530
C5' H5' 1.115 1.090
C5' H5'' 1.115 1.090
C4' O4' 1.410 1.446
C4' C3' 1.494 1.550
C4' H4' 1.115 1.090
O4' C1' 1.461 1.436
C1' N1 1.488 1.465
C1' C2' 1.589 1.541
C1' H1' 1.115 1.090
N1 C6 1.358 1.363
N1 C2 1.399 1.344
C6 C5 1.347 1.353
C6 H6 1.102 1.080
C2 O2 1.228 1.219
C2 N3 1.355 1.333
N3 C4 1.369 1.326
C4 N4 1.338 1.375
C4 C5 1.429 1.410
N4 C7 1.474 1.465
N4 H4 1.019 0.969
C7 H7C1 1.115 1.090
C7 H7C2 1.116 1.090
C7 H7C3 1.115 1.090
C5 H5 1.103 1.080
C2' C3' 1.529 1.547
C2' H2' 1.115 1.089
C2' H2'' 1.115 1.091
C3' O3' 1.451 1.429
C3' H3' 1.116 1.090
O3' HO3' 0.950 0.967

Bond Angles for C34

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 111.3 109.5
OP1 P OP3 101.5 109.5
OP1 P O5' 114.3 109.4
OP2 P OP3 114.3 109.4
OP2 P O5' 109.0 109.5
P OP2 HOP2 111.4 106.8
OP3 P O5' 106.3 109.5
P OP3 HOP3 101.4 106.8
P O5' C5' 118.8 106.8
O5' C5' C4' 104.9 109.5
O5' C5' H5' 113.9 109.5
O5' C5' H5'' 113.9 109.5
C4' C5' H5' 113.9 109.5
C4' C5' H5'' 113.9 109.4
C5' C4' O4' 107.5 110.8
C5' C4' C3' 116.6 110.6
C5' C4' H4' 108.5 110.5
H5' C5' H5'' 96.5 109.5
O4' C4' C3' 107.1 103.6
O4' C4' H4' 108.5 110.5
C4' O4' C1' 109.4 106.9
C3' C4' H4' 108.5 110.6
C4' C3' C2' 104.4 102.1
C4' C3' O3' 114.2 110.9
C4' C3' H3' 110.9 110.9
O4' C1' N1 106.1 109.9
O4' C1' C2' 99.0 107.4
O4' C1' H1' 115.4 109.9
N1 C1' C2' 103.8 109.9
N1 C1' H1' 115.3 109.9
C1' N1 C6 121.9 119.8
C1' N1 C2 116.6 119.8
C2' C1' H1' 115.4 109.8
C1' C2' C3' 98.7 104.2
C1' C2' H2' 116.3 110.6
C1' C2' H2'' 116.3 110.5
C6 N1 C2 121.6 120.4
N1 C6 C5 120.9 119.3
N1 C6 H6 119.5 120.3
N1 C2 O2 120.4 119.5
N1 C2 N3 118.0 121.1
C5 C6 H6 119.5 120.4
C6 C5 C4 118.4 118.9
C6 C5 H5 120.8 120.5
O2 C2 N3 121.6 119.4
C2 N3 C4 121.4 120.7
N3 C4 N4 119.2 120.2
N3 C4 C5 119.7 119.6
N4 C4 C5 121.1 120.1
C4 N4 C7 121.8 120.0
C4 N4 H4 119.1 120.1
C4 C5 H5 120.8 120.5
C7 N4 H4 119.1 119.9
N4 C7 H7C1 121.8 109.5
N4 C7 H7C2 107.8 109.4
N4 C7 H7C3 107.8 109.5
H7C1 C7 H7C2 107.8 109.5
H7C1 C7 H7C3 107.8 109.5
H7C2 C7 H7C3 102.1 109.5
C3' C2' H2' 116.3 110.5
C3' C2' H2'' 116.4 110.5
C2' C3' O3' 105.2 110.9
C2' C3' H3' 110.9 110.9
H2' C2' H2'' 94.1 110.5
O3' C3' H3' 110.9 110.8
C3' O3' HO3' 114.2 106.8

Torsion Angles for C34

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 122.0 120.0
OP2 P OP1 O5' 236.0 240.0
OP1 P OP2 HOP2 180.0 300.1
OP3 P OP1 O5' 114.0 120.0
OP1 P OP3 HOP3 179.9 180.0
OP1 P O5' C5' 324.3 60.0
OP1 P OP2 OP3 245.8 239.9
OP1 P OP2 O5' 127.0 120.0
OP3 P OP2 O5' 241.2 240.0
OP2 P OP3 HOP3 60.0 60.0
OP2 P O5' C5' 89.5 180.0
OP1 P OP3 OP2 119.9 120.0
OP1 P OP3 O5' 240.2 240.0
OP2 P OP3 O5' 120.3 120.0
OP3 P OP2 HOP2 294.2 60.1
OP3 P O5' C5' 213.2 299.9
OP1 P O5' OP2 234.7 240.0
OP1 P O5' OP3 111.0 120.1
OP2 P O5' OP3 236.3 240.1
O5' P OP2 HOP2 53.1 180.1
O5' P OP3 HOP3 299.7 300.0
P O5' C5' C4' 197.6 180.0
P O5' C5' H5' 72.4 60.0
P O5' C5' H5'' 322.9 300.0
HOP2 OP2 P OP3 294.2 60.1
HOP2 OP2 P O5' 53.1 180.1
HOP3 OP3 P O5' 299.7 300.0
C4' C5' O5' H5' 125.3 120.0
C4' C5' O5' H5'' 234.7 240.0
O5' C5' C4' O4' 290.4 65.7
O5' C5' C4' C3' 50.5 180.1
O5' C5' C4' H4' 173.3 302.9
H5' C5' O5' H5'' 109.5 120.0
O5' C5' C4' H5' 234.7 240.0
O5' C5' C4' H5'' 125.3 120.1
H5' C5' C4' H5'' 250.6 240.0
O4' C4' C5' C3' 239.9 245.7
O4' C4' C5' H4' 117.1 122.9
C5' C4' O4' C1' 142.0 158.5
C3' C4' C5' H4' 237.3 237.2
C5' C4' C3' C2' 254.5 204.3
C5' C4' C3' O3' 140.1 86.1
C5' C4' C3' H3' 14.0 322.5
O5' C5' H5' C4' 120.4 120.0
O5' C5' H5' H5'' 240.2 239.9
C4' C5' H5' H5'' 119.8 119.9
H5' C5' C4' O4' 55.7 185.7
H5' C5' C4' C3' 175.8 300.0
H5' C5' C4' H4' 298.5 62.9
O5' C5' H5'' C4' 239.6 240.0
O5' C5' H5'' H5' 119.8 120.0
C4' C5' H5'' H5' 240.2 240.0
H5'' C5' C4' O4' 165.1 305.7
H5'' C5' C4' C3' 285.2 60.0
H5'' C5' C4' H4' 48.0 182.8
O4' C4' C5' H5' 55.7 185.7
O4' C4' C5' H5'' 165.1 305.7
C5' C4' O4' C3' 126.0 118.7
C5' C4' O4' H4' 242.9 237.2
C3' C4' O4' H4' 116.9 118.5
O4' C4' C3' C2' 14.9 323.0
O4' C4' C3' O3' 260.5 204.8
O4' C4' C3' H3' 134.3 81.2
C4' O4' C1' N1 214.2 214.2
C4' O4' C1' C2' 321.5 333.7
C4' O4' C1' H1' 85.3 93.1
C3' C4' C5' H5' 175.8 300.0
C3' C4' C5' H5'' 285.2 60.0
C5' C4' C3' O4' 239.6 241.2
C5' C4' C3' H4' 122.7 122.8
O4' C4' C3' H4' 243.1 241.5
C3' C4' O4' C1' 16.0 39.9
C1' C2' C3' C4' 323.6 20.9
C4' C3' C2' H2' 198.4 262.1
C4' C3' C2' H2'' 88.8 139.5
C2' C3' C4' O3' 114.4 118.2
C2' C3' C4' H3' 240.5 241.8
O3' C3' C4' H3' 126.2 123.6
C4' C3' O3' HO3' 180.0 174.2
H4' C4' C5' H5' 298.5 62.9
H4' C4' C5' H5'' 48.0 182.8
C5' C4' H4' O4' 116.5 123.0
C5' C4' H4' C3' 232.5 237.1
O4' C4' H4' C3' 116.0 114.1
H4' C4' O4' C1' 259.1 281.4
H4' C4' C3' C2' 131.8 81.5
H4' C4' C3' O3' 17.4 323.3
H4' C4' C3' H3' 251.2 199.7
C1' O4' C4' C3' 16.0 39.9
C1' O4' C4' H4' 259.1 281.4
N1 C1' O4' C2' 252.7 240.5
N1 C1' O4' H1' 129.0 121.1
O4' C1' N1 C6 18.5 238.3
O4' C1' N1 C2 197.6 58.3
C2' C1' O4' H1' 236.3 240.6
O4' C1' C2' C3' 44.5 1.9
O4' C1' C2' H2' 169.7 120.6
O4' C1' C2' H2'' 279.2 243.3
O4' C1' N1 C2' 103.8 118.0
O4' C1' N1 H1' 231.0 239.0
C2' C1' N1 H1' 127.2 121.0
N1 C1' C2' C3' 153.6 121.4
N1 C1' C2' H2' 278.8 240.2
N1 C1' C2' H2'' 28.3 2.8
C6 N1 C1' C2 180.9 180.0
C1' N1 C6 C5 179.7 179.7
C1' N1 C6 H6 359.8 0.0
C1' N1 C2 O2 0.7 360.0
C1' N1 C2 N3 180.8 180.0
C4' C3' C2' C1' 323.6 20.9
O4' C1' C2' N1 250.9 240.5
O4' C1' C2' H1' 123.7 119.5
N1 C1' C2' H1' 232.9 239.0
C2' C1' N1 C6 274.6 120.2
C2' C1' N1 C2 93.7 300.3
C3' C2' C1' H2' 234.8 241.3
C3' C2' C1' H2'' 125.3 118.6
C1' C2' C3' O3' 84.2 139.1
C1' C2' C3' H3' 204.1 262.7
H2' C2' C1' H2'' 250.5 237.3
O4' C1' H1' N1 124.3 121.0
O4' C1' H1' C2' 245.4 242.0
N1 C1' H1' C2' 121.1 121.0
H1' C1' N1 C6 147.5 359.3
H1' C1' N1 C2 326.6 179.3
H1' C1' C2' C3' 280.7 242.5
H1' C1' C2' H2' 46.0 1.2
H1' C1' C2' H2'' 155.5 123.8
C6 N1 C1' C2' 274.6 120.2
C6 N1 C1' H1' 147.5 359.3
C1' N1 C6 C2 179.1 180.0
C6 N1 C2 O2 179.9 180.0
C6 N1 C2 N3 360.0 0.0
C5 C6 N1 H6 180.0 179.7
N1 C6 C5 C4 359.6 0.5
N1 C6 C5 H5 179.6 180.0
C2 N1 C1' C2' 93.7 300.3
C2 N1 C1' H1' 326.6 179.3
C1' N1 C2 C6 180.9 180.0
C2 N1 C6 C5 0.7 359.7
C2 N1 C6 H6 180.7 180.0
O2 C2 N1 N3 179.9 180.0
N1 C2 N3 C4 359.2 360.0
C5 C6 N1 C2 0.7 359.7
N1 C6 C5 H6 180.0 180.3
N3 C4 C5 C6 359.5 359.5
N4 C4 C5 C6 180.5 179.8
C4 C5 C6 H5 180.0 180.5
H6 C6 N1 C2 180.7 180.0
N1 C6 H6 C5 180.0 179.7
H6 C6 C5 C4 179.6 180.3
H6 C6 C5 H5 359.6 359.7
N1 C2 O2 N3 180.1 180.0
O2 C2 N3 C4 179.3 180.0
N1 C2 N3 O2 179.9 180.0
C2 N3 C4 N4 180.2 179.9
C2 N3 C4 C5 1.1 0.3
C6 C5 C4 N3 359.5 359.5
N4 C4 N3 C5 179.1 179.7
N3 C4 N4 C7 173.7 0.1
N3 C4 N4 H4 353.7 180.0
N3 C4 C5 H5 179.5 180.0
C6 C5 C4 N4 180.5 179.8
N3 C4 N4 C5 180.9 180.3
N4 C4 C5 H5 0.5 0.3
C7 N4 C4 H4 180.0 180.0
C4 N4 C7 H7C1 180.0 180.0
C4 N4 C7 H7C2 54.7 300.0
C4 N4 C7 H7C3 305.2 60.0
C4 C5 C6 H6 179.6 180.3
C6 C5 C4 H5 180.0 179.5
N3 C4 C5 N4 179.1 179.7
C5 C4 N4 C7 352.8 179.7
C5 C4 N4 H4 172.8 359.7
C7 N4 C4 C5 352.8 179.7
C4 N4 C7 H4 180.0 180.0
H7C1 C7 N4 H7C2 125.2 240.0
H7C1 C7 N4 H7C3 234.8 120.0
H7C2 C7 N4 H7C3 109.5 240.0
H4 N4 C4 C5 172.8 359.7
C4 N4 H4 C7 180.0 180.0
H4 N4 C7 H7C1 360.0 0.0
H4 N4 C7 H7C2 234.7 120.0
H4 N4 C7 H7C3 125.2 240.0
H7C1 C7 N4 H4 360.0 0.0
N4 C7 H7C1 H7C2 234.7 120.0
N4 C7 H7C1 H7C3 125.2 240.0
H7C2 C7 H7C1 H7C3 250.5 120.0
H7C2 C7 N4 H4 234.7 120.0
N4 C7 H7C2 H7C1 133.2 240.0
N4 C7 H7C2 H7C3 246.6 120.0
H7C1 C7 H7C2 H7C3 113.4 240.0
H7C3 C7 N4 H4 125.2 240.0
N4 C7 H7C3 H7C1 226.8 120.1
N4 C7 H7C3 H7C2 113.4 240.0
H7C1 C7 H7C3 H7C2 246.6 120.0
H5 C5 C6 H6 359.6 359.7
C6 C5 H5 C4 180.0 180.5
C2' C3' C4' H4' 131.8 81.5
C4' C3' C2' O3' 239.4 241.8
C4' C3' C2' H3' 119.5 118.2
C3' C2' C1' H1' 280.7 242.5
C1' C2' C3' H2' 125.2 118.8
C1' C2' C3' H2'' 234.8 241.4
H2' C2' C3' H2'' 109.5 122.6
O3' C3' C2' H3' 240.1 236.4
C2' C3' O3' HO3' 66.1 61.4
H2' C2' C1' H1' 46.0 1.2
C1' C2' H2' C3' 244.3 245.2
C1' C2' H2' H2'' 122.1 122.6
C3' C2' H2' H2'' 237.8 237.5
H2' C2' C3' O3' 319.0 20.4
H2' C2' C3' H3' 78.9 144.0
H2'' C2' C1' H1' 155.5 123.8
C1' C2' H2'' C3' 115.7 114.7
C1' C2' H2'' H2' 237.9 237.3
C3' C2' H2'' H2' 122.1 122.6
H2'' C2' C3' O3' 209.4 257.8
H2'' C2' C3' H3' 329.4 21.4
O3' C3' C4' H4' 17.4 323.3
C4' C3' O3' C2' 113.9 112.7
C4' C3' O3' H3' 233.8 236.4
O3' C3' C2' H2' 319.0 20.4
O3' C3' C2' H2'' 209.4 257.8
C2' C3' O3' H3' 119.9 123.7
H3' C3' C4' H4' 251.2 199.7
C4' C3' H3' C2' 244.5 247.3
C4' C3' H3' O3' 128.0 123.6
H3' C3' C2' H2' 78.9 144.0
H3' C3' C2' H2'' 329.4 21.4
C2' C3' H3' O3' 243.5 236.3
H3' C3' O3' HO3' 306.2 297.8
HO3' O3' C3' H3' 306.2 297.8