PDB Chemical Component C2P
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C2P
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.347 |
1.345 |
| N1 |
C6 |
1.319 |
1.363 |
| N1 |
C1' |
1.419 |
1.464 |
| C2 |
N3 |
1.335 |
1.331 |
| C2 |
O2 |
1.193 |
1.220 |
| N3 |
C4 |
1.327 |
1.327 |
| C4 |
C5 |
1.402 |
1.409 |
| C4 |
N4 |
1.333 |
1.376 |
| C5 |
C6 |
1.331 |
1.353 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.104 |
1.081 |
| N4 |
HN41 |
1.020 |
0.970 |
| N4 |
HN42 |
1.021 |
0.970 |
| C1' |
C2' |
1.550 |
1.544 |
| C1' |
O4' |
1.448 |
1.445 |
| C1' |
H1' |
1.115 |
1.090 |
| C2' |
O2' |
1.475 |
1.429 |
| C2' |
C3' |
1.586 |
1.546 |
| C2' |
H2' |
1.114 |
1.089 |
| O2' |
P |
1.528 |
1.610 |
| C3' |
C4' |
1.557 |
1.545 |
| C3' |
O3' |
1.440 |
1.427 |
| C3' |
H3' |
1.114 |
1.090 |
| C4' |
O4' |
1.454 |
1.444 |
| C4' |
C5' |
1.528 |
1.530 |
| C4' |
H4' |
1.116 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C5' |
O5' |
1.416 |
1.428 |
| C5' |
H5'1 |
1.116 |
1.089 |
| C5' |
H5'2 |
1.115 |
1.090 |
| O5' |
HO5' |
0.950 |
0.966 |
| P |
O1P |
1.524 |
1.480 |
| P |
O2P |
1.455 |
1.609 |
| P |
O3P |
1.534 |
1.609 |
| O2P |
HOP2 |
0.950 |
0.967 |
| O3P |
HOP3 |
0.950 |
0.966 |
Bond Angles for C2P
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
120.5 |
120.3 |
| C2 |
N1 |
C1' |
112.4 |
119.9 |
| N1 |
C2 |
N3 |
115.2 |
121.1 |
| N1 |
C2 |
O2 |
116.1 |
119.5 |
| C6 |
N1 |
C1' |
126.0 |
119.8 |
| N1 |
C6 |
C5 |
124.0 |
119.3 |
| N1 |
C6 |
H6 |
117.5 |
120.3 |
| N1 |
C1' |
C2' |
116.4 |
110.4 |
| N1 |
C1' |
O4' |
104.1 |
110.3 |
| N1 |
C1' |
H1' |
107.2 |
110.4 |
| N3 |
C2 |
O2 |
128.5 |
119.4 |
| C2 |
N3 |
C4 |
127.0 |
120.7 |
| N3 |
C4 |
C5 |
115.8 |
119.6 |
| N3 |
C4 |
N4 |
126.3 |
120.2 |
| C5 |
C4 |
N4 |
117.9 |
120.2 |
| C4 |
C5 |
C6 |
117.2 |
119.0 |
| C4 |
C5 |
H5 |
123.9 |
120.5 |
| C4 |
N4 |
HN41 |
126.2 |
120.0 |
| C4 |
N4 |
HN42 |
106.3 |
120.0 |
| C6 |
C5 |
H5 |
118.9 |
120.6 |
| C5 |
C6 |
H6 |
118.5 |
120.4 |
| HN41 |
N4 |
HN42 |
106.3 |
120.0 |
| C2' |
C1' |
O4' |
104.6 |
104.9 |
| C2' |
C1' |
H1' |
106.6 |
110.4 |
| C1' |
C2' |
O2' |
119.5 |
110.8 |
| C1' |
C2' |
C3' |
99.9 |
104.0 |
| C1' |
C2' |
H2' |
109.4 |
110.5 |
| O4' |
C1' |
H1' |
118.4 |
110.4 |
| C1' |
O4' |
C4' |
110.1 |
105.3 |
| O2' |
C2' |
C3' |
109.0 |
110.4 |
| O2' |
C2' |
H2' |
100.4 |
110.4 |
| C2' |
O2' |
P |
132.1 |
106.8 |
| C3' |
C2' |
H2' |
119.9 |
110.6 |
| C2' |
C3' |
C4' |
96.4 |
104.1 |
| C2' |
C3' |
O3' |
112.3 |
110.6 |
| C2' |
C3' |
H3' |
114.6 |
110.6 |
| O2' |
P |
O1P |
109.0 |
109.4 |
| O2' |
P |
O2P |
107.0 |
109.5 |
| O2' |
P |
O3P |
105.0 |
109.5 |
| C4' |
C3' |
O3' |
105.3 |
110.5 |
| C4' |
C3' |
H3' |
120.8 |
110.4 |
| C3' |
C4' |
O4' |
101.8 |
104.8 |
| C3' |
C4' |
C5' |
112.1 |
110.5 |
| C3' |
C4' |
H4' |
122.4 |
110.3 |
| O3' |
C3' |
H3' |
107.0 |
110.5 |
| C3' |
O3' |
HO3' |
112.3 |
106.8 |
| O4' |
C4' |
C5' |
127.8 |
110.4 |
| O4' |
C4' |
H4' |
103.5 |
110.4 |
| C5' |
C4' |
H4' |
90.8 |
110.3 |
| C4' |
C5' |
O5' |
102.2 |
109.5 |
| C4' |
C5' |
H5'1 |
115.0 |
109.5 |
| C4' |
C5' |
H5'2 |
115.0 |
109.4 |
| O5' |
C5' |
H5'1 |
115.0 |
109.5 |
| O5' |
C5' |
H5'2 |
115.0 |
109.4 |
| C5' |
O5' |
HO5' |
102.2 |
106.9 |
| H5'1 |
C5' |
H5'2 |
95.4 |
109.5 |
| O1P |
P |
O2P |
117.9 |
109.4 |
| O1P |
P |
O3P |
105.7 |
109.5 |
| O2P |
P |
O3P |
111.4 |
109.5 |
| P |
O2P |
HOP2 |
107.1 |
106.8 |
| P |
O3P |
HOP3 |
105.0 |
106.8 |
Torsion Angles for C2P
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
C1' |
191.0 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
357.4 |
359.7 |
| C2 |
N1 |
C6 |
H6 |
177.4 |
180.0 |
| C2 |
N1 |
C1' |
C2' |
111.1 |
301.6 |
| C2 |
N1 |
C1' |
O4' |
225.6 |
57.0 |
| C2 |
N1 |
C1' |
H1' |
351.9 |
179.2 |
| N3 |
C2 |
N1 |
O2 |
183.9 |
179.9 |
| N1 |
C2 |
N3 |
C4 |
354.7 |
0.1 |
| C2 |
N1 |
C6 |
C1' |
167.4 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
5.8 |
360.0 |
| C6 |
N1 |
C2 |
O2 |
181.9 |
180.1 |
| C6 |
N1 |
C1' |
C2' |
279.4 |
121.6 |
| C6 |
N1 |
C1' |
O4' |
33.9 |
237.0 |
| C6 |
N1 |
C1' |
H1' |
160.2 |
359.2 |
| C4 |
C5 |
C6 |
N1 |
358.2 |
0.5 |
| N1 |
C6 |
C5 |
H5 |
178.2 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.7 |
| C2 |
N1 |
C1' |
C6 |
191.7 |
180.0 |
| C1' |
N1 |
C2 |
N3 |
174.8 |
179.9 |
| C1' |
N1 |
C2 |
O2 |
350.9 |
0.0 |
| C1' |
N1 |
C6 |
C5 |
190.0 |
179.7 |
| C1' |
N1 |
C6 |
H6 |
10.0 |
0.0 |
| C2' |
C1' |
N1 |
O4' |
245.5 |
244.6 |
| C2' |
C1' |
N1 |
H1' |
119.2 |
122.3 |
| N1 |
C1' |
C2' |
O2' |
201.1 |
261.4 |
| N1 |
C1' |
C2' |
C3' |
82.5 |
142.8 |
| N1 |
C1' |
C2' |
H2' |
315.8 |
24.1 |
| O4' |
C1' |
N1 |
H1' |
233.7 |
237.8 |
| N1 |
C1' |
O4' |
C4' |
238.5 |
200.7 |
| N3 |
C2 |
N1 |
C6 |
5.8 |
360.0 |
| N3 |
C2 |
N1 |
C1' |
174.8 |
179.9 |
| N1 |
C2 |
N3 |
O2 |
175.5 |
180.1 |
| C2 |
N3 |
C4 |
C5 |
1.2 |
0.2 |
| C2 |
N3 |
C4 |
N4 |
181.7 |
179.9 |
| O2 |
C2 |
N1 |
C6 |
181.9 |
180.1 |
| O2 |
C2 |
N1 |
C1' |
350.9 |
0.0 |
| N1 |
C2 |
O2 |
N3 |
184.5 |
179.9 |
| O2 |
C2 |
N3 |
C4 |
179.2 |
180.0 |
| C4 |
N3 |
C2 |
O2 |
179.2 |
180.0 |
| C5 |
C4 |
N3 |
N4 |
179.5 |
180.3 |
| N3 |
C4 |
C5 |
C6 |
2.5 |
359.5 |
| N3 |
C4 |
C5 |
H5 |
182.5 |
180.0 |
| N3 |
C4 |
N4 |
HN41 |
180.0 |
360.0 |
| N3 |
C4 |
N4 |
HN42 |
54.8 |
179.7 |
| N1 |
C6 |
C5 |
C4 |
358.2 |
0.5 |
| N3 |
C4 |
C5 |
N4 |
180.5 |
179.7 |
| C5 |
C4 |
N4 |
HN41 |
0.5 |
179.7 |
| C5 |
C4 |
N4 |
HN42 |
235.3 |
359.4 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.5 |
| C4 |
C5 |
C6 |
H6 |
178.3 |
180.3 |
| N3 |
C4 |
N4 |
C5 |
179.5 |
180.3 |
| N4 |
C4 |
C5 |
C6 |
182.0 |
179.8 |
| N4 |
C4 |
C5 |
H5 |
2.0 |
0.3 |
| HN41 |
N4 |
C4 |
HN42 |
125.2 |
180.3 |
| C5 |
C6 |
N1 |
C1' |
190.0 |
179.7 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
| C6 |
C5 |
C4 |
N4 |
182.0 |
179.8 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.5 |
| H5 |
C5 |
C4 |
N4 |
2.0 |
0.3 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.5 |
| H5 |
C5 |
C6 |
H6 |
358.2 |
359.7 |
| H6 |
C6 |
N1 |
C1' |
10.0 |
0.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
| H6 |
C6 |
C5 |
H5 |
358.2 |
359.7 |
| C4 |
N4 |
HN41 |
HN42 |
234.8 |
179.7 |
| C4 |
N4 |
HN42 |
HN41 |
136.6 |
180.3 |
| N1 |
C1' |
C2' |
O4' |
114.2 |
118.8 |
| N1 |
C1' |
C2' |
H1' |
240.5 |
237.7 |
| O4' |
C1' |
C2' |
H1' |
126.2 |
118.9 |
| C2' |
C1' |
O4' |
C4' |
1.1 |
319.5 |
| O2' |
C2' |
C1' |
C3' |
118.6 |
118.6 |
| O2' |
C2' |
C1' |
H2' |
245.3 |
237.3 |
| C1' |
C2' |
O2' |
P |
146.7 |
123.8 |
| C3' |
C2' |
C1' |
H2' |
126.7 |
118.7 |
| C1' |
C2' |
C3' |
C4' |
47.9 |
0.0 |
| C1' |
C2' |
C3' |
O3' |
157.3 |
118.7 |
| C1' |
C2' |
C3' |
H3' |
279.7 |
241.4 |
| N1 |
C1' |
O4' |
C2' |
237.4 |
241.2 |
| N1 |
C1' |
O4' |
H1' |
118.8 |
122.2 |
| C2' |
C1' |
O4' |
H1' |
241.5 |
241.1 |
| O4' |
C1' |
C2' |
O2' |
86.9 |
142.6 |
| O4' |
C1' |
C2' |
C3' |
328.3 |
24.0 |
| O4' |
C1' |
C2' |
H2' |
201.6 |
265.3 |
| C3' |
C4' |
O4' |
C1' |
30.7 |
40.5 |
| C1' |
O4' |
C4' |
C5' |
161.1 |
159.5 |
| C1' |
O4' |
C4' |
H4' |
262.9 |
281.7 |
| N1 |
C1' |
H1' |
C2' |
125.3 |
122.3 |
| N1 |
C1' |
H1' |
O4' |
242.8 |
237.8 |
| C2' |
C1' |
H1' |
O4' |
117.5 |
115.5 |
| H1' |
C1' |
C2' |
O2' |
320.6 |
23.7 |
| H1' |
C1' |
C2' |
C3' |
202.1 |
265.1 |
| H1' |
C1' |
C2' |
H2' |
75.4 |
146.4 |
| H1' |
C1' |
O4' |
C4' |
119.7 |
78.4 |
| O2' |
C2' |
C1' |
O4' |
86.9 |
142.6 |
| O2' |
C2' |
C1' |
H1' |
320.6 |
23.7 |
| C1' |
C2' |
O2' |
C3' |
246.2 |
245.3 |
| C1' |
C2' |
O2' |
H2' |
119.5 |
122.7 |
| C3' |
C2' |
O2' |
H2' |
233.2 |
237.4 |
| O2' |
C2' |
C3' |
C4' |
281.8 |
241.2 |
| O2' |
C2' |
C3' |
O3' |
31.2 |
359.9 |
| O2' |
C2' |
C3' |
H3' |
153.6 |
122.6 |
| C2' |
O2' |
P |
O1P |
311.8 |
60.0 |
| C2' |
O2' |
P |
O2P |
183.2 |
180.0 |
| C2' |
O2' |
P |
O3P |
64.6 |
300.0 |
| C3' |
C2' |
C1' |
O4' |
328.3 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
202.1 |
265.1 |
| C1' |
C2' |
C3' |
O2' |
126.1 |
118.9 |
| C1' |
C2' |
C3' |
H2' |
240.7 |
241.4 |
| O2' |
C2' |
C3' |
H2' |
114.6 |
122.5 |
| C3' |
C2' |
O2' |
P |
260.5 |
238.5 |
| C4' |
C3' |
C2' |
O3' |
250.6 |
241.3 |
| C4' |
C3' |
C2' |
H3' |
128.2 |
118.6 |
| C2' |
C3' |
C4' |
O4' |
312.0 |
336.0 |
| C2' |
C3' |
C4' |
C5' |
172.5 |
217.1 |
| C2' |
C3' |
C4' |
H4' |
66.5 |
94.9 |
| O3' |
C3' |
C2' |
H3' |
237.6 |
237.3 |
| C2' |
C3' |
O3' |
HO3' |
180.0 |
183.8 |
| H2' |
C2' |
C1' |
O4' |
201.6 |
265.3 |
| H2' |
C2' |
C1' |
H1' |
75.4 |
146.4 |
| C1' |
C2' |
H2' |
O2' |
233.5 |
237.1 |
| C1' |
C2' |
H2' |
C3' |
114.3 |
114.6 |
| O2' |
C2' |
H2' |
C3' |
240.9 |
237.5 |
| H2' |
C2' |
O2' |
P |
27.3 |
1.1 |
| H2' |
C2' |
C3' |
C4' |
167.2 |
118.6 |
| H2' |
C2' |
C3' |
O3' |
276.6 |
237.3 |
| H2' |
C2' |
C3' |
H3' |
39.0 |
0.0 |
| P |
O2' |
C2' |
C3' |
260.5 |
238.5 |
| P |
O2' |
C2' |
H2' |
27.3 |
1.1 |
| O1P |
P |
O2' |
O2P |
128.6 |
240.0 |
| O1P |
P |
O2' |
O3P |
247.2 |
120.0 |
| O2P |
P |
O2' |
O3P |
118.5 |
239.9 |
| O2' |
P |
O2P |
HOP2 |
180.0 |
180.1 |
| O2' |
P |
O3P |
HOP3 |
179.9 |
299.9 |
| C1' |
O4' |
C4' |
C3' |
30.7 |
40.5 |
| C4' |
C3' |
C2' |
H2' |
167.2 |
118.6 |
| C2' |
C3' |
C4' |
O3' |
115.3 |
118.8 |
| C2' |
C3' |
C4' |
H3' |
236.3 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
121.0 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
283.7 |
298.5 |
| O4' |
C4' |
C3' |
C5' |
139.5 |
118.9 |
| O4' |
C4' |
C3' |
H4' |
245.5 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
106.0 |
122.2 |
| C3' |
C4' |
C5' |
O5' |
77.0 |
176.9 |
| C3' |
C4' |
C5' |
H5'1 |
202.4 |
297.0 |
| C3' |
C4' |
C5' |
H5'2 |
311.7 |
57.0 |
| O3' |
C3' |
C2' |
H2' |
276.6 |
237.3 |
| C2' |
C3' |
O3' |
C4' |
256.3 |
245.3 |
| C2' |
C3' |
O3' |
H3' |
126.6 |
122.8 |
| C4' |
C3' |
O3' |
H3' |
230.3 |
237.5 |
| O3' |
C3' |
C4' |
O4' |
196.7 |
217.2 |
| O3' |
C3' |
C4' |
C5' |
57.3 |
98.3 |
| O3' |
C3' |
C4' |
H4' |
311.3 |
336.1 |
| H3' |
C3' |
C2' |
H2' |
39.0 |
0.0 |
| C2' |
C3' |
H3' |
C4' |
114.6 |
114.6 |
| C2' |
C3' |
H3' |
O3' |
234.7 |
237.2 |
| C4' |
C3' |
H3' |
O3' |
120.2 |
122.6 |
| H3' |
C3' |
C4' |
O4' |
75.7 |
94.6 |
| H3' |
C3' |
C4' |
C5' |
296.3 |
335.7 |
| H3' |
C3' |
C4' |
H4' |
190.3 |
213.5 |
| H3' |
C3' |
O3' |
HO3' |
53.4 |
61.1 |
| C4' |
O4' |
C1' |
H1' |
119.7 |
78.4 |
| O4' |
C4' |
C3' |
O3' |
196.7 |
217.2 |
| O4' |
C4' |
C3' |
H3' |
75.7 |
94.6 |
| C3' |
C4' |
O4' |
C5' |
229.7 |
241.0 |
| C3' |
C4' |
O4' |
H4' |
127.8 |
118.8 |
| C5' |
C4' |
O4' |
H4' |
258.2 |
237.8 |
| O4' |
C4' |
C5' |
O5' |
310.7 |
61.4 |
| O4' |
C4' |
C5' |
H5'1 |
76.0 |
181.5 |
| O4' |
C4' |
C5' |
H5'2 |
185.4 |
301.5 |
| C5' |
C4' |
C3' |
O3' |
57.3 |
98.3 |
| C5' |
C4' |
C3' |
H3' |
296.3 |
335.7 |
| C3' |
C4' |
C5' |
O4' |
126.4 |
115.5 |
| C3' |
C4' |
C5' |
H4' |
234.2 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
107.9 |
122.3 |
| O5' |
C5' |
C4' |
H5'1 |
234.7 |
239.9 |
| O5' |
C5' |
C4' |
H5'2 |
125.3 |
119.9 |
| C4' |
C5' |
O5' |
HO5' |
180.0 |
180.0 |
| H5'1 |
C5' |
C4' |
H5'2 |
250.6 |
240.0 |
| H4' |
C4' |
C3' |
O3' |
311.3 |
336.1 |
| H4' |
C4' |
C3' |
H3' |
190.3 |
213.5 |
| C3' |
C4' |
H4' |
O4' |
246.3 |
244.6 |
| C3' |
C4' |
H4' |
C5' |
117.0 |
122.3 |
| O4' |
C4' |
H4' |
C5' |
230.7 |
237.8 |
| H4' |
C4' |
C5' |
O5' |
202.8 |
299.1 |
| H4' |
C4' |
C5' |
H5'1 |
328.1 |
59.2 |
| H4' |
C4' |
C5' |
H5'2 |
77.5 |
179.2 |
| HO3' |
O3' |
C3' |
H3' |
53.4 |
61.1 |
| O5' |
C5' |
C4' |
H4' |
202.8 |
299.1 |
| C4' |
C5' |
O5' |
H5'1 |
125.3 |
120.1 |
| C4' |
C5' |
O5' |
H5'2 |
234.7 |
240.1 |
| H5'1 |
C5' |
O5' |
H5'2 |
109.4 |
120.0 |
| H5'1 |
C5' |
C4' |
H4' |
328.1 |
59.2 |
| C4' |
C5' |
H5'1 |
O5' |
241.7 |
239.9 |
| C4' |
C5' |
H5'1 |
H5'2 |
120.8 |
120.0 |
| O5' |
C5' |
H5'1 |
H5'2 |
239.2 |
240.1 |
| H5'1 |
C5' |
O5' |
HO5' |
54.7 |
59.9 |
| H5'2 |
C5' |
C4' |
H4' |
77.5 |
179.2 |
| C4' |
C5' |
H5'2 |
O5' |
118.3 |
120.0 |
| C4' |
C5' |
H5'2 |
H5'1 |
239.2 |
240.0 |
| O5' |
C5' |
H5'2 |
H5'1 |
120.8 |
120.0 |
| H5'2 |
C5' |
O5' |
HO5' |
305.3 |
299.9 |
| HO5' |
O5' |
C5' |
H5'1 |
54.7 |
59.9 |
| HO5' |
O5' |
C5' |
H5'2 |
305.3 |
299.9 |
| O2' |
P |
O1P |
O2P |
237.7 |
120.0 |
| O2' |
P |
O1P |
O3P |
112.4 |
240.0 |
| O2P |
P |
O1P |
O3P |
234.7 |
120.0 |
| O1P |
P |
O2P |
HOP2 |
56.8 |
300.0 |
| O1P |
P |
O3P |
HOP3 |
295.1 |
180.0 |
| O2' |
P |
O2P |
O1P |
123.3 |
240.0 |
| O2' |
P |
O2P |
O3P |
245.7 |
120.0 |
| O1P |
P |
O2P |
O3P |
122.5 |
240.0 |
| O2P |
P |
O3P |
HOP3 |
64.4 |
60.0 |
| O2' |
P |
O3P |
O1P |
244.8 |
119.9 |
| O2' |
P |
O3P |
O2P |
115.5 |
239.9 |
| O1P |
P |
O3P |
O2P |
230.7 |
120.0 |
| O3P |
P |
O2P |
HOP2 |
294.3 |
60.0 |
| HOP2 |
O2P |
P |
O3P |
294.3 |
60.0 |