PDB Chemical Component C2E

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C2E

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P1 O2P 1.507 1.609
O1P P1 1.500 1.480
O5' P1 1.585 1.609
C5' O5' 1.423 1.428
C4' O4' 1.432 1.429
C4' C5' 1.513 1.530
C3' C4' 1.518 1.537
O3' P11 1.595 1.610
O3' C3' 1.436 1.430
C2' C3' 1.494 1.540
C2' C1' 1.517 1.537
O2' C2' 1.431 1.429
C1' O4' 1.429 1.429
C1' N9 1.461 1.466
N9 C4 1.314 1.368
N9 C8 1.336 1.365
C8 N7 1.347 1.300
C5 N7 1.335 1.355
C5 C6 1.474 1.414
C6 O6 1.252 1.219
N1 C6 1.339 1.352
C2 N1 1.349 1.363
N2 C2 1.354 1.372
N3 C2 1.360 1.314
N3 C4 1.351 1.339
C4 C5 1.458 1.399
P11 O21 1.497 1.611
P11 O5A 1.587 1.609
O11 P11 1.496 1.480
C5A O5A 1.431 1.428
C5A C4A 1.511 1.530
C4A O4A 1.444 1.429
C4A C3A 1.522 1.536
O4A C1A 1.432 1.428
C3A C2A 1.495 1.541
O3A C3A 1.440 1.430
O3A P1 1.617 1.611
C2A O2A 1.437 1.429
C1A C2A 1.526 1.536
C1A N91 1.476 1.465
N91 C41 1.317 1.369
C81 N71 1.352 1.300
C81 N91 1.348 1.365
N71 C51 1.341 1.355
C51 C41 1.464 1.400
C51 C61 1.474 1.415
C61 O61 1.248 1.219
C61 N11 1.337 1.351
C21 N11 1.352 1.363
C21 N21 1.355 1.372
N31 C21 1.353 1.314
C41 N31 1.353 1.338
O2P HO2P 0.950 0.967
C5' H5'1 1.100 1.091
C5' H5'2 1.100 1.089
C4' H4' 1.100 1.089
C3' H3' 1.099 1.092
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.968
C1' H1' 1.100 1.090
C8 H8 1.080 1.080
N1 HN1 1.000 0.970
N2 HN21 1.000 0.970
N2 HN22 1.000 0.970
O21 HO21 0.950 0.967
C5A H511 1.100 1.090
C5A H512 1.100 1.090
C4A H4A 1.100 1.089
C3A H3A 1.100 1.092
C2A H2A 1.100 1.090
O2A HO2A 0.950 0.967
C1A H1A 1.100 1.090
C81 H81 1.080 1.080
N11 HN11 1.000 0.970
N21 HN24 1.000 0.970
N21 HN23 1.000 0.970

Bond Angles for C2E

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P1 O2P HO2P 109.5 114.0
O4' C4' H4' 112.8 109.8
C4' C5' H5'1 109.6 109.4
C4' C5' H5'2 109.6 109.4
C3' C4' H4' 110.0 109.9
O3' P11 O21 108.6 109.4
O3' P11 O5A 108.8 109.6
O3' C3' H3' 101.6 110.2
C2' C3' H3' 112.0 110.1
O2' C2' C1' 110.5 110.3
C2' C1' N9 109.8 109.8
C1' C2' H2' 111.0 110.4
C2' C1' H1' 112.2 109.9
O2' C2' H2' 108.1 110.3
C1' N9 C4 125.1 126.3
C1' N9 C8 126.1 126.2
N9 C1' H1' 108.4 109.8
C8 N9 C4 108.8 107.5
N9 C4 N3 134.9 134.2
N9 C4 C5 106.3 106.1
N9 C8 N7 111.0 109.8
N9 C8 H8 124.5 125.1
N7 C8 H8 124.5 125.1
C5 C6 O6 120.7 120.8
C2 N1 HN1 119.0 119.9
O21 P11 O5A 110.9 109.5
P11 O21 HO21 109.5 114.0
O11 P11 O5A 109.9 109.4
C5A C4A O4A 112.1 109.7
C5A C4A C3A 113.0 109.9
C4A C5A H511 109.2 109.4
C4A C5A H512 109.2 109.4
C5A C4A H4A 104.0 109.9
O4A C4A C3A 105.6 107.7
C4A O4A C1A 110.7 109.8
O4A C4A H4A 111.6 109.8
C4A C3A C2A 101.8 105.0
C3A C4A H4A 110.7 109.8
C4A C3A H3A 114.8 110.6
O4A C1A C2A 105.1 107.9
O4A C1A N91 110.3 109.8
O4A C1A H1A 111.8 109.8
O3A C3A C2A 114.0 110.2
C3A C2A O2A 109.0 110.3
C2A C3A H3A 112.3 110.0
C3A C2A H2A 112.7 110.4
O3A C3A H3A 102.8 110.4
O2A C2A H2A 107.6 110.3
C2A O2A HO2A 109.5 114.0
C1A C2A H2A 110.7 110.3
C1A N91 C41 125.1 126.3
N91 C1A H1A 107.7 109.7
C81 N91 C41 108.2 107.5
N91 C41 C51 107.0 106.1
N91 C41 N31 133.9 134.2
C81 N71 C51 107.3 109.4
N71 C81 H81 124.5 125.1
N71 C51 C41 106.3 107.2
N71 C51 C61 136.4 134.2
C61 C51 C41 117.3 118.6
C51 C41 N31 119.0 119.7
C51 C61 O61 121.9 120.8
C51 C61 N11 118.0 118.4
O61 C61 N11 120.1 120.8
C61 N11 HN11 118.9 119.8
C21 N11 HN11 118.8 119.9
C21 N21 HN24 120.0 120.0
C21 N21 HN23 120.0 120.0
H5'1 C5' H5'2 109.4 109.4
HN21 N2 HN22 120.0 120.0
H511 C5A H512 109.7 109.3
HN24 N21 HN23 120.0 120.0

Torsion Angles for C2E

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1P P1 O2P HO2P 360.0 300.0
O5' P1 O2P HO2P 120.5 60.0
O4' C4' C5' H5'1 186.1 52.4
O4' C4' C5' H5'2 66.1 292.6
C3' C4' O4' H4' 120.2 119.6
H5'1 C5' C4' H5'2 120.0 119.8
O4' C4' C3' H4' 238.0 240.4
C3' C4' C5' H5'1 303.9 170.6
C3' C4' C5' H5'2 183.9 50.8
P11 O3' C3' H3' 337.4 3.9
O21 P11 O3' O5A 239.2 240.0
O3' P11 O21 HO21 241.9 180.1
O11 P11 O3' O5A 119.0 120.0
O3' C3' C4' H4' 325.9 346.9
C2' C3' O3' H3' 121.5 121.9
C2' C3' C4' H4' 89.0 105.9
O3' C3' C2' H3' 244.2 238.1
C1' C2' C3' H3' 269.6 241.5
O2' C2' C1' H2' 240.1 237.8
C2' C1' N9 C4 66.4 85.0
C2' C1' N9 C8 246.9 265.3
N9 C1' C2' H1' 239.4 239.1
O2' C2' C3' H3' 150.8 122.6
O2' C2' C1' N9 211.2 251.2
C1' C2' O2' H2' 121.6 122.2
O2' C2' C1' H1' 331.8 12.1
C1' O4' C4' H4' 260.2 263.2
N9 C1' C2' H2' 331.1 13.4
C2' C1' N9 H1' 122.8 120.9
C8 N9 C1' C4 180.5 180.3
C1' N9 C4 N3 0.6 0.8
C1' N9 C4 C5 180.2 179.9
C1' N9 C8 N7 179.7 180.0
C1' N9 C8 H8 359.7 360.0
C1' N9 C4 C8 180.4 180.3
C4 N9 C1' H1' 303.6 324.1
C4 N9 C8 N7 0.1 0.3
C4 N9 C8 H8 180.1 180.2
C1' N9 C8 C4 179.6 179.7
C8 N9 C1' H1' 124.1 144.4
C8 N9 C4 N3 180.2 180.5
C8 N9 C4 C5 359.8 359.6
N7 C8 N9 H8 180.0 180.0
N7 C8 N9 C4 0.1 0.3
N9 C8 N7 H8 180.0 180.0
N9 C4 C5 N7 0.3 0.4
C5 N7 C8 H8 180.1 180.0
N9 C4 C5 C6 180.0 180.2
N2 C2 N1 HN1 360.0 359.9
N9 C4 N3 C2 179.8 179.5
N3 C2 N1 HN1 180.2 179.9
N9 C4 N3 C5 179.5 179.0
N9 C4 C5 N3 180.4 180.8
O3' P11 O21 O5A 119.5 120.1
O11 P11 O21 O5A 237.6 240.1
O3' P11 O5A O21 240.6 240.0
O5A P11 O21 HO21 122.4 59.9
O3' P11 O11 O5A 241.7 239.9
O21 P11 O11 O5A 123.0 119.9
O11 P11 O21 HO21 0.0 300.0
O4A C4A C5A C3A 240.8 241.7
C5A C4A O4A C1A 143.2 141.9
O4A C4A C5A H4A 120.7 120.8
C5A C4A C3A C2A 205.7 226.1
C3A C4A C5A H4A 239.9 239.1
C5A C4A C3A H3A 327.3 344.7
H511 C5A C4A H512 120.0 119.7
C5A C4A O4A C3A 123.5 119.6
O4A C4A C5A H511 182.4 52.0
O4A C4A C5A H512 62.4 292.2
C5A C4A O4A H4A 243.8 239.1
O4A C4A C3A C2A 328.5 345.6
C3A C4A O4A H4A 120.3 119.4
O4A C4A C3A H3A 90.2 104.3
C4A O4A C1A C2A 0.4 339.1
C4A O4A C1A N91 242.7 219.5
C4A O4A C1A H1A 122.9 98.8
C5A C4A C3A O4A 237.1 240.5
C3A C4A C5A H511 301.6 170.2
C3A C4A C5A H512 181.6 50.5
C5A C4A C3A H4A 116.2 121.1
C3A C4A O4A C1A 19.8 22.2
O4A C4A C3A H4A 239.1 240.6
O3A C3A C4A C2A 238.0 241.2
C4A C3A C2A O2A 272.2 243.1
C2A C3A C4A H3A 238.4 241.4
C4A C3A C2A H2A 152.8 121.0
O3A C3A C4A H3A 116.4 122.6
C1A O4A C4A C3A 19.8 22.2
C1A O4A C4A H4A 259.4 262.8
O4A C1A C2A H2A 216.8 252.0
O4A C1A N91 C41 195.7 203.5
N91 C1A O4A H1A 119.8 120.7
C2A C3A C4A H4A 89.5 105.1
C4A C3A C2A H3A 123.3 119.0
O4A C1A C2A C3A 339.2 10.9
O3A C3A C2A H3A 243.5 238.0
O2A C2A C3A H2A 119.4 122.2
C3A C2A O2A HO2A 180.0 180.0
C1A C2A C3A H2A 238.9 241.1
C4A C3A O3A C2A 114.6 115.6
O3A C3A C4A H4A 327.5 346.3
C4A C3A O3A H3A 236.5 237.3
O3A C3A C2A O2A 32.4 2.2
C2A C3A O3A H3A 121.9 121.7
O3A C3A C2A H2A 273.0 240.0
O3A P1 O2P HO2P 240.9 180.0
O4A C1A C2A O2A 97.3 129.8
O2A C2A C3A H3A 148.8 124.1
C3A C2A O2A H2A 237.5 237.8
C1A C2A O2A H2A 121.3 122.2
O4A C1A C2A N91 241.6 240.3
O4A C1A C2A H1A 121.9 119.7
C1A C2A C3A H3A 268.4 243.0
C3A C2A C1A H2A 122.4 118.9
O2A C2A C1A H2A 240.5 237.8
C1A C2A O2A HO2A 63.7 64.3
O4A C1A N91 C2A 115.1 118.5
O4A C1A N91 H1A 237.8 239.2
N91 C1A C2A H2A 335.2 11.6
C81 N91 C1A C41 180.6 180.4
C1A N91 C41 C51 180.9 179.9
C1A N91 C41 N31 0.2 0.9
C41 N91 C1A H1A 317.9 324.3
N71 C51 C41 N91 359.5 0.4
C61 C51 C41 N91 179.7 180.2
C51 C41 N91 N31 180.7 178.9
N71 C81 N91 C41 359.8 0.3
C81 N71 C51 C41 0.3 359.8
C81 N71 C51 C61 180.1 180.0
C1A N91 C81 C41 179.5 179.7
C81 N91 C1A H1A 138.5 144.7
C81 N91 C41 C51 0.4 359.5
C81 N91 C41 N31 179.7 180.6
N91 C41 C51 N71 359.5 0.4
C51 N71 C81 H81 179.9 180.0
C61 C51 N71 C41 179.8 180.2
N71 C51 C41 N31 180.1 179.6
N71 C51 C61 O61 0.4 0.1
N71 C51 C61 N11 180.0 180.0
N91 C41 C51 N31 179.4 180.9
N71 C51 C41 C61 179.9 180.2
C41 C51 C61 O61 180.2 180.4
C41 C51 C61 N11 359.9 0.3
N91 C41 C51 C61 179.7 180.2
N71 C51 C61 C41 180.2 179.7
C61 C51 C41 N31 0.3 359.4
O61 C61 C51 N11 180.3 180.1
C51 C61 N11 HN11 180.2 180.0
O61 C61 C51 C41 180.2 180.4
C51 C61 O61 N11 179.7 179.9
O61 C61 N11 HN11 359.9 359.9
N11 C61 C51 C41 359.9 0.3
C51 C61 N11 O61 180.3 180.1
C21 N11 C61 HN11 180.0 180.0
C61 N11 C21 HN11 180.0 180.0
N21 C21 N11 HN11 359.7 0.0
HN24 N21 C21 HN23 180.0 179.9
N91 C41 N31 C21 180.3 179.5
C51 C41 N31 C21 359.5 0.7
N31 C21 N11 HN11 179.5 180.0
N31 C21 N21 HN24 360.0 180.0
N31 C21 N21 HN23 180.0 0.1
N91 C41 N31 C51 180.8 178.8
C4' C5' H5'1 H5'2 239.9 240.2
C4' C5' H5'2 H5'1 120.1 119.8
H4' C4' C5' H5'1 64.1 291.7
H4' C4' C5' H5'2 304.1 171.9
H3' C3' C4' H4' 210.2 224.6
H2' C2' C3' H3' 31.0 0.4
O2' C2' H2' C1' 121.3 122.2
H2' C2' C1' N9 331.1 13.4
H2' C2' C1' H1' 91.7 134.3
HO2' O2' C2' C1' 64.1 64.4
HO2' O2' C2' H2' 302.5 302.2
C2' C1' H1' N9 238.6 239.1
H1' C1' C2' H2' 91.7 134.3
H1' C1' N9 C4 303.6 324.1
H1' C1' N9 C8 124.1 144.4
H8 C8 N9 C4 180.1 180.2
N9 C8 H8 N7 180.0 180.1
HO21 O21 P11 O5A 122.4 59.9
H511 C5A C4A O4A 182.4 52.0
H511 C5A C4A C3A 301.6 170.2
C4A C5A H511 H512 240.3 240.2
H511 C5A C4A H4A 61.6 291.2
H512 C5A C4A O4A 62.4 292.2
H512 C5A C4A C3A 181.6 50.5
C4A C5A H512 H511 119.7 119.8
H512 C5A C4A H4A 301.7 171.4
C5A C4A H4A O4A 121.0 120.8
C5A C4A H4A C3A 238.3 239.0
H4A C4A C5A H511 61.6 291.2
H4A C4A C5A H512 301.7 171.4
O4A C4A H4A C3A 117.3 118.2
H4A C4A O4A C1A 259.4 262.8
H4A C4A C3A C2A 89.5 105.1
H4A C4A C3A H3A 211.1 223.7
C4A C3A H3A C2A 244.3 244.5
H3A C3A C4A H4A 211.1 223.7
O3A C3A H3A C2A 123.0 121.8
H3A C3A C2A O2A 148.8 124.1
H3A C3A C2A H2A 29.4 2.0
C3A C2A H2A O2A 120.2 122.2
H2A C2A C3A H3A 29.4 2.0
H2A C2A O2A HO2A 302.5 302.2
HO2A O2A C2A H2A 302.5 302.2
O4A C1A H1A C2A 242.0 241.5
O4A C1A H1A N91 121.3 120.8
H1A C1A C2A H2A 94.9 132.3
H1A C1A N91 C41 317.9 324.3
H81 C81 N91 C41 179.8 180.3
H81 C81 N71 C51 179.9 180.0
C21 N21 HN24 HN23 180.0 180.1
C21 N21 HN23 HN24 180.0 179.9