Atom Nomenclature for C1I

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for C1I

Atom Name (V3) Atom Name (V2)
C1 C1
N2 N2
C3 C3
C4 C4
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
O11 O11
C12 C12
C13 C13
C14 C14
C15 C15
O17 O17
C18 C18
O20 O20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
N33 N33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
H11C H11C
H12C H12C
H13C H13C
H31C H31C
H32C H32C
H33C H33C
H4 H4
H61C H61C
H62C H62C
H18 H18
H81C H81C
H82C H82C
H91C H91C
H92C H92C
H28 H28
H13 H13
H21 H21
H15 H15
H17 H17
H20 H20
H221 H221
H222 H222
H241 H241
H242 H242
H243 H243
H25 H25
H261 H261
H262 H262
H271 H271
H272 H272
H30 H30
H38 H38
H32 H32
H34 H34
H35 H35
H37 H37