PDB Chemical Component C1B

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C1B

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.426 1.400
C1 C6 1.413 1.393
C1 C7 1.392 1.479
C2 C3 1.397 1.362
C2 H2 1.081 1.079
C3 C4 1.359 1.400
C3 H3 1.080 1.080
C4 C5 1.330 1.408
C4 N3 1.291 1.348
C5 C6 1.376 1.385
C5 N4 1.324 1.383
C6 H6 1.080 1.081
C7 N1 1.312 1.378
C7 N2 1.323 1.303
N1 HN1 1.000 0.970
N2 HN21 1.000  
N2 HN22 1.000 0.970
N3 C8 1.296 1.312
N4 C8 1.325 1.368
N4 HN4 1.000 0.970
C8 C1' 1.403 1.477
C1' C2' 1.389 1.395
C1' C6' 1.412 1.399
C2' C3' 1.383 1.381
C2' H2' 1.080 1.080
C3' CVX 1.534 1.507
C3' C4' 1.394 1.382
CVX CWX 1.565 1.506
CVX C6X 1.573 1.529
CVX H31' 1.100 1.090
CWX OXX 1.227 1.343
CWX OYX 1.219 1.208
OYX H34' 0.950  
C6X C7X 1.572 1.507
C6X H421 1.100 1.090
C6X H422 1.100 1.091
C7X O8X 1.228 1.343
C7X O9X 1.216 1.208
O8X H44' 0.950 0.967
C4' C5' 1.401 1.394
C4' H4' 1.080 1.079
C5' C6' 1.416 1.398
C5' C1B 1.402 1.483
C6' O6' 1.385 1.358
O6' H6' 0.950 0.966
C1B C2B 1.392 1.398
C1B C6B 1.407 1.393
C2B C3B 1.365 1.386
C2B O2B 1.379 1.358
C3B C4B 1.367 1.382
C3B H3B 1.080 1.080
C4B C5B 1.372 1.383
C4B H4B 1.080 1.080
C5B C51 1.527 1.507
C5B C6B 1.399 1.381
C51 N52 1.481 1.465
C51 H511 1.100 1.090
C51 H512 1.100 1.090
N52 C53 1.316 1.348
N52 H52 1.001 0.970
C53 O54 1.216 1.216
C53 N55 1.311 1.349
N55 H551 1.000 0.970
N55 H552 1.000 0.970
C6B H6B 1.079 1.079
O2B H2B 0.951 0.968

Bond Angles for C1B

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 117.6 120.2
C2 C1 C7 120.6 119.9
C1 C2 C3 122.0 120.5
C1 C2 H2 119.0 119.7
C6 C1 C7 121.8 119.9
C1 C6 C5 118.0 119.6
C1 C6 H6 121.0 120.2
C1 C7 N1 118.1 120.0
C1 C7 N2 119.2 120.0
C3 C2 H2 119.0 119.7
C2 C3 C4 116.3 120.1
C2 C3 H3 121.9 120.0
C4 C3 H3 121.8 119.9
C3 C4 C5 123.7 119.7
C3 C4 N3 129.5 133.2
C5 C4 N3 106.8 107.2
C4 C5 C6 122.4 119.9
C4 C5 N4 112.6 106.2
C4 N3 C8 105.8 109.8
C6 C5 N4 125.0 133.9
C5 C6 H6 121.0 120.1
C5 N4 C8 99.8 107.1
C5 N4 HN4 130.1 126.5
N1 C7 N2 122.6 120.0
C7 N1 HN1 109.7 120.0
C7 N2 HN21 125.1  
C7 N2 HN22 109.7 120.1
HN21 N2 HN22 125.2  
N3 C8 N4 115.0 109.7
N3 C8 C1' 123.4 125.1
C8 N4 HN4 130.1 126.5
N4 C8 C1' 121.5 125.1
C8 C1' C2' 120.6 120.1
C8 C1' C6' 122.3 120.1
C2' C1' C6' 117.1 119.8
C1' C2' C3' 122.2 120.1
C1' C2' H2' 118.9 120.0
C1' C6' C5' 122.8 119.6
C1' C6' O6' 116.6 120.2
C3' C2' H2' 119.0 119.9
C2' C3' CVX 119.0 119.8
C2' C3' C4' 119.7 120.4
CVX C3' C4' 121.3 119.8
C3' CVX CWX 107.2 109.5
C3' CVX C6X 110.8 109.5
C3' CVX H31' 113.3 109.4
C3' C4' C5' 121.5 120.2
C3' C4' H4' 119.2 119.9
CWX CVX C6X 117.4 109.5
CWX CVX H31' 106.0 109.5
CVX CWX OXX 115.7 120.0
CVX CWX OYX 120.1 120.1
C6X CVX H31' 102.1 109.4
CVX C6X C7X 113.9 109.5
CVX C6X H421 107.0 109.5
CVX C6X H422 108.0 109.5
OXX CWX OYX 124.2 119.9
CWX OYX H34' 109.5  
C7X C6X H421 107.0 109.5
C7X C6X H422 108.0 109.4
C6X C7X O8X 122.2 120.0
C6X C7X O9X 115.6 120.0
H421 C6X H422 113.0 109.4
O8X C7X O9X 122.1 120.0
C7X O8X H44' 109.5 120.0
C5' C4' H4' 119.2 119.8
C4' C5' C6' 116.8 119.8
C4' C5' C1B 120.0 120.1
C6' C5' C1B 123.2 120.1
C5' C6' O6' 120.6 120.1
C5' C1B C2B 121.9 120.1
C5' C1B C6B 121.6 120.1
C6' O6' H6' 109.5 106.8
C2B C1B C6B 116.5 119.7
C1B C2B C3B 122.0 119.7
C1B C2B O2B 121.8 120.1
C1B C6B C5B 121.4 119.9
C1B C6B H6B 119.3 120.0
C3B C2B O2B 116.2 120.1
C2B C3B C4B 120.5 120.0
C2B C3B H3B 119.7 119.9
C2B O2B H2B 109.5 106.8
C4B C3B H3B 119.7 120.0
C3B C4B C5B 120.5 120.4
C3B C4B H4B 119.7 119.8
C5B C4B H4B 119.7 119.8
C4B C5B C51 118.0 119.9
C4B C5B C6B 119.0 120.2
C51 C5B C6B 123.0 119.9
C5B C51 N52 107.1 109.4
C5B C51 H511 110.8 109.5
C5B C51 H512 110.3 109.5
C5B C6B H6B 119.3 120.1
N52 C51 H511 110.8 109.5
N52 C51 H512 110.3 109.5
C51 N52 C53 119.7 120.0
C51 N52 H52 120.2 120.1
H511 C51 H512 107.6 109.5
C53 N52 H52 120.2 120.0
N52 C53 O54 121.5 120.0
N52 C53 N55 122.7 120.0
O54 C53 N55 115.8 120.0
C53 N55 H551 123.5 120.0
C53 N55 H552 112.9 120.0
H551 N55 H552 123.6 120.0

Torsion Angles for C1B

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 180.1 180.0
C2 C1 C6 C5 0.1 0.0
C2 C1 C6 H6 180.1 180.0
C2 C1 C7 N1 160.1 360.0
C2 C1 C7 N2 340.3 180.0
C3 C2 C1 H2 180.0 180.1
C1 C2 C3 C4 0.1 360.0
C1 C2 C3 H3 180.1 180.0
C2 C1 C6 C7 179.9 180.0
C6 C1 C2 C3 359.9 0.0
C6 C1 C2 H2 179.9 180.0
C6 C1 C7 N1 340.1 180.0
C6 C1 C7 N2 160.3 0.0
C4 C5 C6 C1 360.0 359.9
C1 C6 C5 N4 179.8 180.0
C5 C6 C1 H6 180.0 180.0
C2 C1 C7 C6 180.1 180.0
C7 C1 C2 C3 179.8 180.1
C7 C1 C2 H2 359.8 360.0
C7 C1 C6 C5 180.2 180.0
C7 C1 C6 H6 0.1 360.0
N1 C7 C1 N2 179.8 180.0
C1 C7 N1 HN1 180.0 0.0
C1 C7 N2 HN21 179.9  
C1 C7 N2 HN22 359.9 180.0
C3 C2 C1 C6 359.9 0.0
C3 C2 C1 C7 179.8 180.1
C1 C2 C3 H2 180.0 179.9
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 360.0 360.0
C2 C3 C4 N3 180.1 180.3
H2 C2 C1 C6 179.9 180.0
H2 C2 C1 C7 359.8 360.0
C1 C2 H2 C3 180.0 180.1
H2 C2 C3 C4 180.1 180.0
H2 C2 C3 H3 0.1 0.1
C4 C3 C2 H2 180.1 180.0
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 N3 179.8 179.7
C3 C4 C5 C6 360.0 0.0
C3 C4 C5 N4 180.1 180.0
C3 C4 N3 C8 179.9 180.1
H3 C3 C2 H2 0.1 0.1
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 180.0 180.0
H3 C3 C4 N3 0.1 0.3
C1 C6 C5 C4 360.0 359.9
C5 C4 C3 H3 180.0 180.0
C3 C4 C5 N3 180.1 180.3
C5 C4 N3 C8 0.0 0.4
C6 C5 C4 N4 179.9 180.0
C4 C5 C6 H6 180.0 180.0
C4 C5 N4 C8 359.9 0.0
C4 C5 N4 HN4 180.0 180.0
N3 C4 C3 H3 0.1 0.3
C3 C4 N3 C5 179.9 179.7
N3 C4 C5 C6 179.9 179.8
N3 C4 C5 N4 0.0 359.8
C4 N3 C8 N4 359.9 359.6
C4 N3 C8 C1' 179.7 179.8
C5 C6 C1 C7 180.2 180.0
C1 C6 C5 H6 180.0 180.0
C6 C5 C4 N3 179.9 179.8
C4 C5 C6 N4 180.2 180.0
C6 C5 N4 C8 180.1 180.0
C6 C5 N4 HN4 0.1 0.0
N4 C5 C4 N3 0.0 359.8
C4 C5 N4 C6 179.9 180.0
N4 C5 C6 H6 359.8 0.0
N3 C8 N4 C5 0.1 0.2
C8 N4 C5 HN4 180.0 180.0
C5 N4 C8 C1' 180.3 180.0
H6 C6 C1 C7 0.1 360.0
C1 C6 H6 C5 180.0 180.0
H6 C6 C5 N4 359.8 0.0
C1 C7 N1 N2 180.2 180.0
N1 C7 N2 HN21 0.1  
N1 C7 N2 HN22 180.1 0.0
C1 C7 N2 N1 179.8 180.0
N2 C7 N1 HN1 359.8 180.0
HN21 N2 C7 HN22 180.0  
HN1 N1 C7 N2 359.8 180.0
C7 N2 HN21 HN22 180.0  
C7 N2 HN22 HN21 180.0  
C5 N4 C8 N3 0.1 0.2
N3 C8 N4 HN4 180.1 180.2
N4 C8 N3 C1' 180.3 179.8
N3 C8 C1' C2' 179.5 219.7
N3 C8 C1' C6' 359.6 40.0
C5 N4 C8 HN4 180.0 180.0
N3 C8 N4 C1' 179.8 180.2
N4 C8 C1' C2' 359.2 40.0
N4 C8 C1' C6' 179.3 220.3
C5 N4 HN4 C8 180.0 180.0
HN4 N4 C8 C1' 0.3 360.0
N3 C8 C1' N4 180.3 179.7
C1' C8 N4 HN4 0.3 360.0
C2' C1' C8 C6' 179.9 179.7
C8 C1' C2' C3' 180.1 180.0
C8 C1' C2' H2' 0.1 0.1
C8 C1' C6' C5' 180.1 180.3
C8 C1' C6' O6' 359.7 359.7
C8 C1' C2' C6' 180.1 180.3
C2' C1' C6' C5' 0.2 0.6
C2' C1' C6' O6' 179.8 180.0
C3' C2' C1' H2' 180.0 180.0
C1' C2' C3' CVX 177.5 180.0
C1' C2' C3' C4' 359.8 0.0
C8 C1' C6' C2' 179.9 179.7
C6' C1' C2' C3' 0.0 359.7
C6' C1' C2' H2' 180.0 179.8
C4' C5' C6' C1' 359.8 359.4
C1' C6' C5' C1B 179.9 179.7
C5' C6' C1' O6' 180.4 180.6
C1' C6' O6' H6' 238.4 90.0
C3' C2' C1' C6' 0.0 359.7
C1' C2' C3' H2' 180.0 180.0
CVX C3' C2' C4' 177.7 180.0
C2' C3' CVX CWX 230.1 60.0
C2' C3' CVX C6X 100.9 299.9
C2' C3' CVX H31' 346.8 180.0
C2' C3' C4' C5' 0.1 360.0
C2' C3' C4' H4' 180.1 180.0
H2' C2' C1' C6' 180.0 179.8
C1' C2' H2' C3' 180.0 180.0
H2' C2' C3' CVX 357.5 360.0
H2' C2' C3' C4' 179.9 180.0
CVX C3' C2' H2' 357.5 360.0
C2' C3' CVX C4' 182.4 180.0
CVX C3' C4' C5' 182.5 179.9
CVX C3' C4' H4' 2.5 0.0
CWX CVX C3' C6X 129.3 120.1
CWX CVX C3' H31' 243.4 240.0
C3' CVX CWX OXX 67.0 180.0
C3' CVX CWX OYX 247.3 360.0
C6X CVX C3' H31' 114.1 120.0
C3' CVX C6X C7X 287.2 185.0
C3' CVX C6X H421 169.2 305.1
C3' CVX C6X H422 47.2 65.0
C4' C3' C2' H2' 179.9 180.0
C2' C3' C4' CVX 177.6 180.0
C4' C3' CVX CWX 47.8 240.0
C4' C3' CVX C6X 278.5 120.0
C4' C3' CVX H31' 164.4 360.0
C5' C4' C3' H4' 180.0 179.9
C3' C4' C5' C6' 0.0 0.3
C3' C4' C5' C1B 179.9 180.1
CWX CVX C3' C4' 47.8 240.0
C3' CVX CWX C6X 234.6 239.9
C3' CVX CWX H31' 121.4 120.0
C6X CVX CWX H31' 246.7 240.0
CWX CVX C6X C7X 163.7 65.0
CWX CVX C6X H421 45.7 185.0
CWX CVX C6X H422 283.7 305.0
OXX CWX CVX OYX 179.6 180.0
CVX CWX OYX H34' 179.6  
C6X CVX C3' C4' 278.5 120.0
C3' CVX C6X CWX 123.6 120.0
C3' CVX C6X H31' 239.0 240.0
CWX CVX C6X H31' 115.5 120.0
C6X CVX CWX OXX 192.3 300.0
C6X CVX CWX OYX 12.7 120.0
C7X C6X CVX H421 118.0 239.9
C7X C6X CVX H422 240.0 120.0
CVX C6X C7X O8X 327.8 180.0
CVX C6X C7X O9X 148.1 0.1
H421 C6X CVX H422 122.0 240.0
H31' CVX C3' C4' 164.4 360.0
C3' CVX H31' CWX 242.7 240.0
C3' CVX H31' C6X 119.2 120.0
CWX CVX H31' C6X 236.5 240.0
H31' CVX CWX OXX 305.6 60.0
H31' CVX CWX OYX 126.0 240.0
H31' CVX C6X C7X 48.2 305.0
H31' CVX C6X H421 290.2 65.0
H31' CVX C6X H422 168.2 185.0
OXX CWX CVX C6X 192.3 300.0
OXX CWX CVX H31' 305.6 60.0
CVX CWX OXX OYX 180.4 180.0
OXX CWX OYX H34' 360.0  
OYX CWX CVX C6X 12.7 120.0
OYX CWX CVX H31' 126.0 240.0
CVX CWX OYX OXX 179.6 180.0
C7X C6X CVX H31' 48.2 305.0
CVX C6X C7X H421 242.0 120.1
CVX C6X C7X H422 120.0 240.0
H421 C6X C7X H422 238.0 119.9
O8X C7X C6X O9X 179.7 179.9
C6X C7X O8X H44' 180.4 180.0
H421 C6X CVX H31' 290.2 65.0
CVX C6X H421 C7X 122.5 239.9
CVX C6X H421 H422 241.2 120.0
C7X C6X H421 H422 118.8 240.1
H421 C6X C7X O8X 85.8 59.9
H421 C6X C7X O9X 266.2 240.0
H422 C6X CVX H31' 168.2 185.0
CVX C6X H422 C7X 236.3 120.0
CVX C6X H422 H421 118.2 240.0
C7X C6X H422 H421 241.8 120.0
H422 C6X C7X O8X 207.8 300.0
H422 C6X C7X O9X 28.1 120.1
O8X C7X C6X H421 85.8 59.9
O8X C7X C6X H422 207.8 300.0
C6X C7X O8X O9X 180.4 180.1
O9X C7X C6X H421 266.2 240.0
O9X C7X C6X H422 28.1 120.1
C6X C7X O9X O8X 179.7 179.9
O9X C7X O8X H44' 0.0 360.0
H44' O8X C7X O9X 0.0 360.0
C1' C6' C5' C4' 359.8 359.4
C3' C4' C5' H4' 180.0 180.1
C6' C5' C4' C1B 180.1 180.3
C4' C5' C6' O6' 180.2 180.0
C4' C5' C1B C2B 139.2 245.0
C4' C5' C1B C6B 318.3 65.3
C3' C4' H4' C5' 180.0 179.9
H4' C4' C5' C6' 180.0 180.3
H4' C4' C5' C1B 360.0 360.0
C1' C6' C5' O6' 179.6 179.4
C6' C5' C4' H4' 180.0 180.3
C4' C5' C6' C1B 179.9 179.7
C6' C5' C1B C2B 319.1 64.7
C6' C5' C1B C6B 138.2 245.0
C5' C6' O6' H6' 58.0 269.5
C1B C5' C4' H4' 360.0 360.0
C4' C5' C1B C6' 180.1 180.3
C1B C5' C6' O6' 0.3 0.2
C2B C1B C5' C6B 180.9 179.7
C5' C1B C2B C3B 178.6 180.0
C5' C1B C2B O2B 357.1 360.0
C5' C1B C6B C5B 181.2 180.3
C5' C1B C6B H6B 1.2 359.7
C1' C6' O6' C5' 180.4 180.6
O6' C6' C5' C1B 0.3 0.2
C5' C1B C2B C6B 179.1 180.3
C2B C1B C6B C5B 0.4 0.6
C2B C1B C6B H6B 180.3 180.0
C3B C2B C1B O2B 181.4 180.0
C1B C2B C3B C4B 0.4 360.0
C1B C2B C3B H3B 180.4 180.0
C1B C2B O2B H2B 231.9 270.0
C5' C1B C6B C2B 180.9 179.7
C6B C1B C2B C3B 359.4 359.7
C6B C1B C2B O2B 178.0 179.7
C4B C5B C6B C1B 360.0 359.4
C51 C5B C6B C1B 179.9 179.7
C5B C6B C1B H6B 180.0 180.6
C3B C2B C1B C6B 359.4 359.7
C1B C2B C3B O2B 178.7 180.0
C3B C2B O2B H2B 50.6 90.0
C4B C3B C2B H3B 180.0 180.0
C2B C3B C4B C5B 359.9 0.0
C2B C3B C4B H4B 179.9 180.0
O2B C2B C1B C6B 178.0 179.7
C1B C2B O2B C3B 181.3 180.0
O2B C2B C3B C4B 181.8 180.0
O2B C2B C3B H3B 1.8 360.0
C4B C3B C2B O2B 181.8 180.0
C2B C3B C4B H3B 180.0 180.0
C5B C4B C3B H4B 180.0 180.0
C3B C4B C5B C51 179.9 180.0
C3B C4B C5B C6B 359.8 0.3
H3B C3B C2B O2B 1.8 360.0
C2B C3B H3B C4B 180.0 180.0
H3B C3B C4B C5B 179.9 180.0
H3B C3B C4B H4B 359.9 360.0
C1B C6B C5B C4B 360.0 359.4
C5B C4B C3B H3B 179.9 180.0
C3B C4B C5B H4B 180.0 180.0
C51 C5B C4B C6B 180.0 179.7
C4B C5B C51 N52 144.8 90.0
C4B C5B C51 H511 23.9 330.0
C4B C5B C51 H512 264.8 210.0
C4B C5B C6B H6B 180.0 180.0
H4B C4B C3B H3B 359.9 360.0
C3B C4B H4B C5B 180.0 180.0
H4B C4B C5B C51 359.9 0.0
H4B C4B C5B C6B 179.9 180.3
C1B C6B C5B C51 179.9 179.7
C51 C5B C4B H4B 359.9 0.0
C4B C5B C51 C6B 180.0 180.3
C51 C5B C6B H6B 360.0 0.3
N52 C51 C5B H511 120.9 120.0
N52 C51 C5B H512 240.0 240.0
C5B C51 N52 C53 103.1 180.0
C5B C51 N52 H52 283.1 0.1
H511 C51 C5B H512 119.1 120.0
C1B C6B C5B H6B 180.0 179.4
C6B C5B C4B H4B 179.9 180.3
C4B C5B C6B C51 180.0 179.7
C6B C5B C51 N52 324.8 269.7
C6B C5B C51 H511 203.9 149.7
C6B C5B C51 H512 84.9 29.7
N52 C51 C5B C6B 324.8 269.7
C5B C51 N52 H511 239.1 240.0
C5B C51 N52 H512 120.0 120.0
H511 C51 N52 H512 240.9 239.9
C53 N52 C51 H52 180.0 180.0
C51 N52 C53 O54 0.6 360.0
C51 N52 C53 N55 180.3 180.0
H511 C51 C5B C6B 203.9 149.7
C5B C51 H511 N52 118.7 120.0
C5B C51 H511 H512 239.4 240.0
N52 C51 H511 H512 120.6 120.1
H511 C51 N52 C53 224.0 300.0
H511 C51 N52 H52 44.0 120.0
H512 C51 C5B C6B 84.9 29.7
C5B C51 H512 N52 241.9 240.1
C5B C51 H512 H511 120.9 120.0
N52 C51 H512 H511 239.0 239.9
H512 C51 N52 C53 343.0 60.0
H512 C51 N52 H52 163.0 240.1
C53 N52 C51 H511 224.0 300.0
C53 N52 C51 H512 343.0 60.0
C51 N52 C53 H52 180.0 180.0
O54 C53 N52 N55 180.3 180.0
N52 C53 N55 H551 180.1 180.0
N52 C53 N55 H552 0.1 359.7
H52 N52 C51 H511 44.0 120.0
H52 N52 C51 H512 163.0 240.1
C51 N52 H52 C53 180.0 180.0
H52 N52 C53 O54 180.6 179.9
H52 N52 C53 N55 0.3 360.0
O54 C53 N52 H52 180.6 179.9
N52 C53 O54 N55 179.7 180.0
O54 C53 N55 H551 359.9 360.0
O54 C53 N55 H552 179.9 179.8
N55 C53 N52 H52 0.3 360.0
N52 C53 N55 O54 180.3 180.0
H551 N55 C53 H552 180.0 180.2
C53 N55 H551 H552 180.0 179.8
C53 N55 H552 H551 180.0 180.2
C1B C6B H6B C5B 180.0 180.6