PDB Chemical Component C0Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C0Y

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.529 1.530
C2 C3 1.537 1.530
C2 C4 1.532 1.530
C2 C5 1.538 1.507
C5 C6 1.383 1.377
C5 C10 1.423 1.390
C6 C7 1.385 1.397
C7 C8 1.390 1.397
C7 C12 1.496 1.476
C8 C9 1.383 1.376
C9 C10 1.392 1.391
C10 O11 1.377 1.357
C12 O13 1.217 1.215
C12 N14 1.357 1.349
N14 C15 1.469 1.471
N14 C19 1.464 1.472
C15 C16 1.517 1.533
C16 O17 1.435 1.430
O17 C18 1.436 1.430
C18 C19 1.520 1.529
C1 H11C 1.100 1.090
C1 H12C 1.100 1.090
C1 H13C 1.100 1.089
C3 H31C 1.100 1.091
C3 H32C 1.100 1.090
C3 H33C 1.099 1.089
C4 H41C 1.100 1.090
C4 H42C 1.100 1.091
C4 H43C 1.100 1.090
C6 H6 1.080 1.081
C8 H8 1.080 1.079
C9 H9 1.080 1.080
O11 H11 0.950 0.966
C15 H151 1.100 1.090
C15 H152 1.100 1.091
C19 H191 1.100 1.090
C19 H192 1.100 1.090
C16 H161 1.100 1.089
C16 H162 1.100 1.089
C18 H181 1.100 1.089
C18 H182 1.100 1.090

Bond Angles for C0Y

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C2 C3 108.1 109.5
C1 C2 C4 108.4 109.5
C1 C2 C5 110.4 109.5
C2 C1 H11C 109.5 109.5
C2 C1 H12C 109.5 109.4
C2 C1 H13C 109.4 109.5
C3 C2 C4 108.6 109.5
C3 C2 C5 110.4 109.4
C2 C3 H31C 109.5 109.4
C2 C3 H32C 109.4 109.5
C2 C3 H33C 109.5 109.5
C4 C2 C5 110.8 109.4
C2 C4 H41C 109.5 109.5
C2 C4 H42C 109.5 109.5
C2 C4 H43C 109.4 109.5
C2 C5 C6 116.6 120.0
C2 C5 C10 125.1 119.9
C6 C5 C10 118.3 120.1
C5 C6 C7 121.8 119.9
C5 C6 H6 119.1 120.0
C5 C10 C9 119.8 120.1
C5 C10 O11 121.1 119.9
C6 C7 C8 119.4 119.8
C6 C7 C12 120.0 120.0
C7 C6 H6 119.1 120.1
C8 C7 C12 120.6 120.1
C7 C8 C9 120.5 119.9
C7 C8 H8 119.8 120.0
C7 C12 O13 119.3 120.0
C7 C12 N14 119.1 120.0
C8 C9 C10 120.2 120.1
C9 C8 H8 119.8 120.1
C8 C9 H9 119.9 120.0
C9 C10 O11 119.1 119.9
C10 C9 H9 119.9 119.9
C10 O11 H11 109.5 114.0
O13 C12 N14 121.5 120.0
C12 N14 C15 122.5 121.0
C12 N14 C19 122.8 121.0
C15 N14 C19 113.4 118.0
N14 C15 C16 109.6 108.4
N14 C15 H151 109.4 109.7
N14 C15 H152 109.4 109.6
N14 C19 C18 109.7 108.6
N14 C19 H191 109.4 109.7
N14 C19 H192 109.3 109.7
C15 C16 O17 111.3 109.2
C16 C15 H151 109.4 109.7
C16 C15 H152 109.4 109.7
C15 C16 H161 108.9 109.5
C15 C16 H162 108.5 109.6
C16 O17 C18 110.1 114.2
O17 C16 H161 108.9 109.5
O17 C16 H162 108.5 109.5
O17 C18 C19 111.3 109.3
O17 C18 H181 108.8 109.5
O17 C18 H182 108.4 109.5
C18 C19 H191 109.4 109.6
C18 C19 H192 109.4 109.5
C19 C18 H181 108.9 109.6
C19 C18 H182 108.4 109.3
H11C C1 H12C 109.4 109.4
H11C C1 H13C 109.5 109.5
H12C C1 H13C 109.5 109.5
H31C C3 H32C 109.5 109.5
H31C C3 H33C 109.5 109.5
H32C C3 H33C 109.5 109.5
H41C C4 H42C 109.4 109.4
H41C C4 H43C 109.4 109.5
H42C C4 H43C 109.5 109.5
H151 C15 H152 109.6 109.7
H191 C19 H192 109.6 109.7
H161 C16 H162 110.8 109.6
H181 C18 H182 110.9 109.6

Torsion Angles for C0Y

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C2 C1 C4 242.4 239.9
C3 C2 C1 C5 120.9 120.0
C1 C2 C3 H31C 216.1 60.0
C1 C2 C3 H32C 336.1 180.0
C1 C2 C3 H33C 96.1 300.1
C4 C2 C1 C5 238.4 240.0
C1 C2 C4 H41C 200.4 60.0
C1 C2 C4 H42C 320.4 180.0
C1 C2 C4 H43C 80.4 300.0
C1 C2 C5 C6 5.7 0.0
C1 C2 C5 C10 184.0 179.7
H11C C1 C2 H12C 240.0 240.0
H11C C1 C2 H13C 120.0 120.0
H12C C1 C2 H13C 240.0 240.0
C1 C2 C3 C4 117.4 120.1
C1 C2 C3 C5 239.1 240.0
C3 C2 C1 H11C 229.9 60.0
C3 C2 C1 H12C 349.9 180.0
C3 C2 C1 H13C 109.9 300.0
C4 C2 C3 C5 121.7 120.0
C3 C2 C4 H41C 317.6 180.1
C3 C2 C4 H42C 77.6 300.0
C3 C2 C4 H43C 197.6 60.0
C3 C2 C5 C6 246.3 240.0
C3 C2 C5 C10 64.5 59.7
H31C C3 C2 H32C 240.0 240.0
H31C C3 C2 H33C 120.0 120.0
H32C C3 C2 H33C 240.0 240.0
C1 C2 C4 C3 242.8 239.9
C1 C2 C4 C5 121.3 120.0
C4 C2 C1 H11C 347.5 180.0
C4 C2 C1 H12C 107.5 300.0
C4 C2 C1 H13C 227.5 60.0
C3 C2 C4 C5 238.5 240.0
C4 C2 C3 H31C 98.6 300.0
C4 C2 C3 H32C 218.7 60.0
C4 C2 C3 H33C 338.7 180.0
C4 C2 C5 C6 125.9 120.0
C4 C2 C5 C10 304.2 299.7
H41C C4 C2 H42C 240.0 240.0
H41C C4 C2 H43C 120.0 120.0
H42C C4 C2 H43C 240.0 240.0
C1 C2 C5 C3 119.5 120.0
C1 C2 C5 C4 239.8 240.0
C5 C2 C1 H11C 109.1 300.0
C5 C2 C1 H12C 229.0 60.0
C5 C2 C1 H13C 349.0 180.0
C3 C2 C5 C4 120.4 120.0
C5 C2 C3 H31C 337.0 180.0
C5 C2 C3 H32C 97.0 300.0
C5 C2 C3 H33C 217.0 60.0
C5 C2 C4 H41C 79.0 300.0
C5 C2 C4 H42C 199.0 60.0
C5 C2 C4 H43C 319.1 180.0
C6 C5 C2 C10 181.7 180.3
C2 C5 C6 C7 178.6 180.0
C2 C5 C6 H6 358.6 359.9
C2 C5 C10 C9 181.6 179.7
C2 C5 C10 O11 2.3 0.1
C2 C5 C6 C10 178.4 179.7
C6 C5 C10 C9 359.9 359.4
C6 C5 C10 O11 180.5 179.7
C5 C6 C7 C8 359.7 360.0
C5 C6 C7 C12 182.3 180.0
C7 C6 C5 H6 180.0 180.1
C2 C5 C10 C6 181.7 180.3
C10 C5 C6 C7 0.2 0.3
C10 C5 C6 H6 180.2 180.2
C8 C9 C10 C5 0.1 0.6
C9 C10 C5 O11 179.4 179.7
C5 C10 C9 H9 180.1 180.3
C5 C10 O11 H11 248.1 90.0
C7 C6 C5 C10 0.2 0.3
C5 C6 C7 H6 180.0 179.9
C8 C7 C6 C12 177.4 180.0
C6 C7 C8 C9 0.3 0.0
C6 C7 C8 H8 180.3 180.0
C6 C7 C12 O13 120.1 311.4
C6 C7 C12 N14 304.3 131.4
C6 C7 C8 C12 182.6 180.0
C8 C7 C6 H6 179.7 180.0
C8 C7 C12 O13 302.7 131.4
C8 C7 C12 N14 126.9 311.4
C7 C8 C9 C10 359.8 359.7
C9 C8 C7 H8 180.0 180.0
C7 C8 C9 H9 179.8 180.0
C6 C7 C12 C8 177.4 180.0
C12 C7 C6 H6 2.3 0.0
C12 C7 C8 C9 177.7 180.0
C12 C7 C8 H8 357.7 0.0
O13 C12 C7 N14 175.8 179.9
C7 C12 N14 C15 173.7 183.8
C7 C12 N14 C19 340.0 3.5
C5 C10 C9 C8 0.1 0.6
C9 C8 C7 C12 177.7 180.0
C7 C8 C9 H8 180.0 180.0
C8 C9 C10 O11 179.5 180.2
C10 C9 C8 H9 180.0 179.8
C5 C10 C9 O11 180.6 180.3
C10 C9 C8 H8 179.8 179.7
C8 C9 C10 H9 180.0 180.2
C9 C10 O11 H11 68.7 270.3
C5 C10 O11 C9 179.4 179.7
O11 C10 C9 H9 359.5 360.0
C7 C12 O13 N14 184.3 180.1
O13 C12 N14 C15 358.0 3.9
O13 C12 N14 C19 164.3 183.5
C7 C12 N14 O13 175.7 179.9
C15 N14 C12 C19 193.7 180.3
C12 N14 C15 C16 114.8 129.4
C12 N14 C15 H151 234.8 249.2
C12 N14 C15 H152 354.9 9.7
C12 N14 C19 C18 245.0 230.5
C12 N14 C19 H191 5.0 350.3
C12 N14 C19 H192 125.1 110.9
C12 N14 C15 C19 167.5 179.7
C15 N14 C19 C18 52.5 50.2
C15 N14 C19 H191 172.4 170.0
C15 N14 C19 H192 292.5 290.6
N14 C15 C16 O17 55.9 52.3
C16 C15 N14 H151 240.0 240.2
C16 C15 N14 H152 119.9 119.7
N14 C15 C16 H161 175.9 172.2
N14 C15 C16 H162 296.6 292.4
H151 C15 N14 H152 239.9 239.5
C12 N14 C19 C15 192.6 180.3
C19 N14 C15 C16 307.3 309.7
C19 N14 C15 H151 67.3 69.5
C19 N14 C15 H152 187.4 190.0
O17 C18 C19 N14 304.5 308.0
C18 C19 N14 H191 240.0 240.2
C18 C19 N14 H192 119.9 119.6
N14 C19 C18 H181 184.5 188.0
N14 C19 C18 H182 63.7 67.8
H191 C19 N14 H192 239.9 239.4
C16 C15 N14 C19 307.3 309.7
N14 C15 C16 H151 120.0 119.8
N14 C15 C16 H152 240.0 240.3
C15 C16 O17 C18 299.7 297.4
O17 C16 C15 H161 240.0 240.1
O17 C16 C15 H162 119.3 119.9
H151 C15 C16 H152 120.0 120.5
H161 C16 C15 H162 239.3 239.8
O17 C16 C15 H151 295.9 292.6
O17 C16 C15 H152 175.8 172.0
C15 C16 O17 H161 120.0 119.9
C15 C16 O17 H162 240.7 240.1
C16 O17 C18 C19 60.1 62.5
C16 O17 C18 H181 180.1 182.5
C16 O17 C18 H182 300.9 302.7
H161 C16 O17 H162 120.7 120.2
N14 C19 C18 O17 304.5 308.0
C18 O17 C16 H161 179.6 177.5
C18 O17 C16 H162 58.9 57.3
O17 C18 C19 H191 184.5 188.1
O17 C18 C19 H192 64.4 67.7
C19 C18 O17 H181 240.0 239.9
C19 C18 O17 H182 119.2 119.7
H181 C18 O17 H182 239.2 239.8
N14 C19 C18 H191 120.0 119.8
N14 C19 C18 H192 240.1 240.3
O17 C18 C19 H181 120.0 120.0
O17 C18 C19 H182 240.8 240.1
H191 C19 C18 H192 120.1 120.4
H181 C18 C19 H182 120.8 120.1
H11C C1 C2 C3 229.9 60.0
H11C C1 C2 C4 347.5 180.0
H11C C1 C2 C5 109.1 300.0
C2 C1 H11C H12C 120.0 120.0
C2 C1 H11C H13C 240.0 240.0
H12C C1 H11C H13C 120.0 120.0
H12C C1 C2 C3 349.9 180.0
H12C C1 C2 C4 107.5 300.0
H12C C1 C2 C5 229.0 60.0
C2 C1 H12C H11C 240.0 240.0
C2 C1 H12C H13C 120.0 120.0
H11C C1 H12C H13C 240.0 240.0
H13C C1 C2 C3 109.9 300.0
H13C C1 C2 C4 227.5 60.0
H13C C1 C2 C5 349.0 180.0
C2 C1 H13C H11C 120.0 120.0
C2 C1 H13C H12C 240.0 240.0
H11C C1 H13C H12C 120.0 120.0
H31C C3 C2 C4 98.6 300.0
H31C C3 C2 C5 337.0 180.0
C2 C3 H31C H32C 120.0 120.0
C2 C3 H31C H33C 240.0 240.0
H32C C3 H31C H33C 120.0 120.0
H32C C3 C2 C4 218.7 60.0
H32C C3 C2 C5 97.0 300.0
C2 C3 H32C H31C 240.0 240.0
C2 C3 H32C H33C 120.0 120.0
H31C C3 H32C H33C 240.0 240.0
H33C C3 C2 C4 338.7 180.0
H33C C3 C2 C5 217.0 60.0
C2 C3 H33C H31C 120.0 119.9
C2 C3 H33C H32C 240.0 239.9
H31C C3 H33C H32C 120.0 120.0
H41C C4 C2 C5 79.0 300.0
C2 C4 H41C H42C 120.0 120.0
C2 C4 H41C H43C 240.0 240.0
H42C C4 H41C H43C 120.0 120.0
H42C C4 C2 C5 199.0 60.0
C2 C4 H42C H41C 240.0 240.0
C2 C4 H42C H43C 120.0 120.0
H41C C4 H42C H43C 240.0 240.0
H43C C4 C2 C5 319.1 180.0
C2 C4 H43C H41C 120.0 120.0
C2 C4 H43C H42C 240.0 240.0
H41C C4 H43C H42C 120.0 120.0
H6 C6 C5 C10 180.2 180.2
C5 C6 H6 C7 180.0 180.1
H6 C6 C7 C8 179.7 180.0
H6 C6 C7 C12 2.3 0.0
H8 C8 C7 C12 357.7 0.0
C7 C8 H8 C9 180.0 180.0
H8 C8 C9 C10 179.8 179.7
H8 C8 C9 H9 359.8 360.0
C8 C9 H9 C10 180.0 179.8
H9 C9 C8 H8 359.8 360.0
H9 C9 C10 O11 359.5 360.0
H151 C15 N14 C19 67.3 69.5
N14 C15 H151 C16 239.9 241.0
N14 C15 H151 H152 120.0 120.5
H151 C15 C16 O17 295.9 292.6
C16 C15 H151 H152 240.1 239.5
H151 C15 C16 H161 55.9 52.4
H151 C15 C16 H162 176.6 172.7
H152 C15 N14 C19 187.4 190.0
N14 C15 H152 C16 120.1 118.9
N14 C15 H152 H151 240.0 239.5
H152 C15 C16 O17 175.8 172.0
C16 C15 H152 H151 119.9 120.6
H152 C15 C16 H161 295.8 291.9
H152 C15 C16 H162 56.6 52.1
N14 C19 H191 C18 239.8 240.8
N14 C19 H191 H192 119.9 120.5
C18 C19 H191 H192 240.1 239.7
H191 C19 C18 H181 64.5 68.1
H191 C19 C18 H182 303.7 308.0
N14 C19 H192 C18 120.1 119.1
N14 C19 H192 H191 240.1 239.4
C18 C19 H192 H191 119.9 120.4
H192 C19 C18 H181 304.4 307.7
H192 C19 C18 H182 183.6 187.6
C15 C16 H161 O17 238.5 240.3
H161 C16 C15 H151 55.9 52.4
H161 C16 C15 H152 295.8 291.9
C15 C16 H161 H162 119.3 120.2
H161 C16 O17 C18 179.6 177.5
O17 C16 H161 H162 240.7 239.9
C15 C16 H162 O17 121.0 119.7
H162 C16 C15 H151 176.6 172.7
H162 C16 C15 H152 56.6 52.1
C15 C16 H162 H161 240.5 239.8
H162 C16 O17 C18 58.9 57.3
O17 C16 H162 H161 119.5 120.1
O17 C18 H181 C19 238.5 240.1
O17 C18 H181 H182 119.2 120.2
H181 C18 C19 H191 64.5 68.1
H181 C18 C19 H192 304.4 307.7
C19 C18 H181 H182 240.7 240.0
O17 C18 H182 C19 121.0 119.7
O17 C18 H182 H181 240.5 239.9
H182 C18 C19 H191 303.7 308.0
H182 C18 C19 H192 183.6 187.6
C19 C18 H182 H181 119.5 120.1