PDB Chemical Component C0D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C0D
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAA |
CAJ |
1.525 |
1.531 |
| CAJ |
CAK |
1.444 |
1.530 |
| CAK |
CAL |
1.518 |
1.530 |
| CAL |
CAM |
1.511 |
1.530 |
| CAM |
NAQ |
1.472 |
1.464 |
| NAQ |
CAT |
1.343 |
1.348 |
| OAD |
CAT |
1.238 |
1.212 |
| CAT |
CAO |
1.514 |
1.507 |
| CAO |
CAN |
1.541 |
1.530 |
| CAN |
NAR |
1.459 |
1.464 |
| OAE |
CAU |
1.234 |
1.213 |
| NAR |
CAU |
1.355 |
1.348 |
| CAC |
CAW |
1.557 |
1.530 |
| CAU |
CAV |
1.515 |
1.508 |
| CAB |
CAW |
1.580 |
1.530 |
| CAW |
CAV |
1.584 |
1.530 |
| CAW |
CAP |
1.548 |
1.530 |
| CAV |
OAG |
1.421 |
1.430 |
| CAP |
H1 |
1.100 |
1.089 |
| CAP |
H2 |
1.099 |
1.090 |
| CAP |
H3 |
1.100 |
1.090 |
| CAB |
H4 |
1.100 |
1.090 |
| CAB |
H5 |
1.100 |
1.089 |
| CAB |
H6 |
1.100 |
1.090 |
| CAC |
H7 |
1.100 |
1.090 |
| CAC |
H8 |
1.100 |
1.090 |
| CAC |
H9 |
1.100 |
1.090 |
| CAV |
H10 |
1.100 |
1.090 |
| OAG |
H11 |
0.950 |
0.967 |
| NAR |
H12 |
1.000 |
0.970 |
| CAN |
H13 |
1.100 |
1.090 |
| CAN |
H14 |
1.100 |
1.089 |
| CAO |
H15 |
1.100 |
1.090 |
| CAO |
H16 |
1.100 |
1.090 |
| NAQ |
H17 |
1.000 |
0.969 |
| CAM |
H18 |
1.100 |
1.090 |
| CAM |
H19 |
1.101 |
1.090 |
| CAL |
H20 |
1.100 |
1.090 |
| CAL |
H21 |
1.100 |
1.089 |
| CAK |
H22 |
1.100 |
1.090 |
| CAK |
H23 |
1.100 |
1.089 |
| CAJ |
H24 |
1.100 |
1.090 |
| CAJ |
H25 |
1.100 |
1.090 |
| CAA |
H26 |
1.100 |
1.090 |
| CAA |
H27 |
1.100 |
1.090 |
| CAA |
H28 |
1.100 |
1.089 |
Bond Angles for C0D
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAA |
CAJ |
H24 |
110.0 |
109.5 |
| CAA |
CAJ |
H25 |
109.9 |
109.4 |
| CAJ |
CAK |
H22 |
109.6 |
109.4 |
| CAJ |
CAK |
H23 |
109.6 |
109.5 |
| CAK |
CAL |
H20 |
111.2 |
109.5 |
| CAK |
CAL |
H21 |
111.2 |
109.5 |
| CAL |
CAM |
H18 |
109.2 |
109.4 |
| CAL |
CAM |
H19 |
109.2 |
109.5 |
| CAM |
NAQ |
H17 |
119.6 |
120.0 |
| CAT |
CAO |
H15 |
109.4 |
109.5 |
| CAT |
CAO |
H16 |
109.4 |
109.5 |
| CAO |
CAN |
H13 |
108.9 |
109.5 |
| CAO |
CAN |
H14 |
108.9 |
109.4 |
| CAN |
NAR |
H12 |
118.5 |
120.1 |
| CAC |
CAW |
CAV |
108.1 |
109.5 |
| CAU |
CAV |
H10 |
107.8 |
109.5 |
| CAB |
CAW |
CAV |
111.1 |
109.5 |
| CAW |
CAV |
OAG |
109.8 |
109.5 |
| CAW |
CAV |
H10 |
107.0 |
109.5 |
| CAW |
CAP |
H1 |
109.5 |
109.4 |
| CAW |
CAP |
H2 |
109.5 |
109.4 |
| CAW |
CAP |
H3 |
109.5 |
109.4 |
| OAG |
CAV |
H10 |
109.0 |
109.5 |
| CAV |
OAG |
H11 |
109.5 |
114.0 |
| H1 |
CAP |
H2 |
109.5 |
109.5 |
| H1 |
CAP |
H3 |
109.5 |
109.5 |
| H2 |
CAP |
H3 |
109.5 |
109.5 |
| H4 |
CAB |
H5 |
109.4 |
109.4 |
| H4 |
CAB |
H6 |
109.4 |
109.5 |
| H5 |
CAB |
H6 |
109.5 |
109.5 |
| H7 |
CAC |
H8 |
109.5 |
109.5 |
| H7 |
CAC |
H9 |
109.4 |
109.5 |
| H8 |
CAC |
H9 |
109.5 |
109.4 |
| H13 |
CAN |
H14 |
109.5 |
109.5 |
| H15 |
CAO |
H16 |
109.5 |
109.4 |
| H18 |
CAM |
H19 |
109.5 |
109.4 |
| H20 |
CAL |
H21 |
109.5 |
109.5 |
| H22 |
CAK |
H23 |
109.5 |
109.5 |
| H24 |
CAJ |
H25 |
109.5 |
109.5 |
| H26 |
CAA |
H27 |
109.5 |
109.5 |
| H26 |
CAA |
H28 |
109.5 |
109.5 |
| H27 |
CAA |
H28 |
109.5 |
109.5 |
Torsion Angles for C0D
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAA |
CAJ |
CAK |
H22 |
275.1 |
60.0 |
| CAA |
CAJ |
CAK |
H23 |
35.3 |
300.0 |
| H24 |
CAJ |
CAA |
H25 |
239.4 |
120.0 |
| CAJ |
CAK |
CAL |
H20 |
269.6 |
60.1 |
| CAJ |
CAK |
CAL |
H21 |
31.9 |
300.0 |
| H22 |
CAK |
CAJ |
H23 |
239.8 |
120.0 |
| CAK |
CAL |
CAM |
H18 |
212.0 |
60.1 |
| CAK |
CAL |
CAM |
H19 |
331.7 |
300.1 |
| H20 |
CAL |
CAK |
H21 |
237.7 |
120.0 |
| CAL |
CAM |
NAQ |
H17 |
349.5 |
360.0 |
| H18 |
CAM |
CAL |
H19 |
240.3 |
120.0 |
| NAQ |
CAT |
CAO |
H15 |
209.2 |
60.0 |
| NAQ |
CAT |
CAO |
H16 |
329.1 |
300.0 |
| OAD |
CAT |
CAO |
H15 |
27.5 |
240.0 |
| OAD |
CAT |
CAO |
H16 |
147.4 |
120.0 |
| CAT |
CAO |
CAN |
H13 |
286.5 |
60.0 |
| CAT |
CAO |
CAN |
H14 |
45.8 |
300.0 |
| H15 |
CAO |
CAT |
H16 |
240.1 |
120.0 |
| CAO |
CAN |
NAR |
H12 |
98.3 |
360.0 |
| H13 |
CAN |
CAO |
H14 |
240.7 |
120.0 |
| OAE |
CAU |
CAV |
H10 |
303.9 |
132.8 |
| NAR |
CAU |
CAV |
H10 |
132.8 |
312.8 |
| CAB |
CAW |
CAC |
CAV |
120.5 |
240.0 |
| CAC |
CAW |
CAV |
OAG |
291.8 |
174.6 |
| CAC |
CAW |
CAV |
H10 |
173.6 |
54.6 |
| CAC |
CAW |
CAP |
H1 |
180.0 |
300.0 |
| CAC |
CAW |
CAP |
H2 |
300.0 |
60.0 |
| CAC |
CAW |
CAP |
H3 |
60.0 |
180.0 |
| CAW |
CAV |
CAU |
H10 |
117.6 |
120.0 |
| OAG |
CAV |
CAU |
H10 |
240.9 |
240.0 |
| CAU |
CAV |
OAG |
H11 |
180.0 |
300.0 |
| CAC |
CAW |
CAB |
CAV |
241.4 |
120.0 |
| CAB |
CAW |
CAV |
OAG |
173.0 |
294.6 |
| CAB |
CAW |
CAV |
H10 |
54.8 |
174.6 |
| CAB |
CAW |
CAP |
H1 |
298.2 |
180.0 |
| CAB |
CAW |
CAP |
H2 |
58.2 |
300.1 |
| CAB |
CAW |
CAP |
H3 |
178.2 |
60.0 |
| CAU |
CAV |
CAW |
H10 |
241.9 |
240.0 |
| CAV |
CAW |
CAP |
H1 |
61.1 |
60.0 |
| CAV |
CAW |
CAP |
H2 |
181.1 |
180.0 |
| CAV |
CAW |
CAP |
H3 |
301.1 |
300.0 |
| OAG |
CAV |
CAW |
H10 |
118.2 |
120.0 |
| CAW |
CAV |
OAG |
H11 |
304.6 |
60.0 |
| H1 |
CAP |
CAW |
H2 |
240.0 |
239.9 |
| H1 |
CAP |
CAW |
H3 |
120.0 |
120.0 |
| H2 |
CAP |
CAW |
H3 |
240.0 |
240.0 |
| CAU |
CAV |
OAG |
H10 |
118.4 |
120.0 |
| CAW |
CAV |
OAG |
H10 |
243.1 |
240.0 |
| CAW |
CAP |
H1 |
H2 |
120.0 |
120.0 |
| CAW |
CAP |
H1 |
H3 |
240.0 |
240.1 |
| H2 |
CAP |
H1 |
H3 |
120.0 |
120.1 |
| CAW |
CAP |
H2 |
H1 |
240.0 |
240.0 |
| CAW |
CAP |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
CAP |
H2 |
H3 |
240.0 |
239.9 |
| CAW |
CAP |
H3 |
H1 |
120.0 |
119.9 |
| CAW |
CAP |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
CAP |
H3 |
H2 |
120.0 |
120.1 |
| H4 |
CAB |
CAW |
CAV |
298.6 |
60.0 |
| H5 |
CAB |
H4 |
H6 |
120.0 |
120.0 |
| H5 |
CAB |
CAW |
CAV |
58.6 |
179.9 |
| H4 |
CAB |
H5 |
H6 |
240.0 |
240.0 |
| H6 |
CAB |
CAW |
CAV |
178.6 |
300.0 |
| H4 |
CAB |
H6 |
H5 |
120.0 |
120.0 |
| H7 |
CAC |
CAW |
CAV |
59.5 |
67.1 |
| H8 |
CAC |
H7 |
H9 |
120.0 |
120.0 |
| H8 |
CAC |
CAW |
CAV |
179.5 |
187.1 |
| H7 |
CAC |
H8 |
H9 |
240.0 |
239.9 |
| H9 |
CAC |
CAW |
CAV |
299.5 |
307.0 |
| H7 |
CAC |
H9 |
H8 |
120.0 |
120.1 |
| CAW |
CAV |
H10 |
OAG |
118.7 |
120.0 |
| H10 |
CAV |
OAG |
H11 |
61.6 |
180.0 |
| H11 |
OAG |
CAV |
H10 |
61.6 |
180.0 |
| CAO |
CAN |
H13 |
H14 |
118.9 |
240.0 |
| H13 |
CAN |
NAR |
H12 |
338.0 |
120.0 |
| CAO |
CAN |
H14 |
H13 |
241.1 |
120.0 |
| H14 |
CAN |
NAR |
H12 |
218.7 |
240.0 |
| CAT |
CAO |
H15 |
H16 |
119.8 |
240.0 |
| H15 |
CAO |
CAN |
H13 |
166.4 |
180.0 |
| H15 |
CAO |
CAN |
H14 |
285.7 |
60.0 |
| CAT |
CAO |
H16 |
H15 |
240.2 |
120.0 |
| H16 |
CAO |
CAN |
H13 |
46.6 |
300.0 |
| H16 |
CAO |
CAN |
H14 |
165.8 |
180.0 |
| CAL |
CAM |
H18 |
H19 |
119.5 |
240.0 |
| H18 |
CAM |
NAQ |
H17 |
229.4 |
119.9 |
| CAL |
CAM |
H19 |
H18 |
240.5 |
120.0 |
| H19 |
CAM |
NAQ |
H17 |
109.7 |
239.9 |
| CAK |
CAL |
H20 |
H21 |
123.3 |
240.0 |
| H20 |
CAL |
CAM |
H18 |
93.1 |
180.0 |
| H20 |
CAL |
CAM |
H19 |
212.9 |
60.0 |
| CAK |
CAL |
H21 |
H20 |
236.7 |
120.0 |
| H21 |
CAL |
CAM |
H18 |
330.8 |
300.0 |
| H21 |
CAL |
CAM |
H19 |
90.5 |
180.1 |
| CAJ |
CAK |
H22 |
H23 |
120.2 |
240.0 |
| H22 |
CAK |
CAL |
H20 |
149.7 |
180.0 |
| H22 |
CAK |
CAL |
H21 |
272.0 |
60.0 |
| CAJ |
CAK |
H23 |
H22 |
239.7 |
120.0 |
| H23 |
CAK |
CAL |
H20 |
29.5 |
300.0 |
| H23 |
CAK |
CAL |
H21 |
151.8 |
180.0 |
| CAA |
CAJ |
H24 |
H25 |
120.9 |
240.0 |
| H24 |
CAJ |
CAK |
H22 |
155.4 |
180.0 |
| H24 |
CAJ |
CAK |
H23 |
275.6 |
60.0 |
| CAA |
CAJ |
H25 |
H24 |
239.1 |
120.0 |
| H25 |
CAJ |
CAK |
H22 |
34.8 |
300.0 |
| H25 |
CAJ |
CAK |
H23 |
155.0 |
180.0 |
| H26 |
CAA |
CAJ |
H24 |
299.7 |
60.0 |
| H26 |
CAA |
CAJ |
H25 |
60.3 |
300.0 |
| H27 |
CAA |
H26 |
H28 |
120.0 |
120.1 |
| H27 |
CAA |
CAJ |
H24 |
59.7 |
180.0 |
| H27 |
CAA |
CAJ |
H25 |
180.3 |
60.0 |
| H26 |
CAA |
H27 |
H28 |
240.0 |
239.9 |
| H28 |
CAA |
CAJ |
H24 |
179.7 |
300.0 |
| H28 |
CAA |
CAJ |
H25 |
300.3 |
180.0 |
| H26 |
CAA |
H28 |
H27 |
120.0 |
120.0 |