PDB Chemical Component C05

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for C05

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	N	1.363	1.289
N1	N2	1.406	1.284
N	N3	1.355	1.405
N2	C	1.288	1.315
N3	C	1.340	1.354
N3	C1	1.502	1.465
C	S	1.741	1.762
C5	C1	1.530	1.543
C5	C4	1.531	1.548
C1	C2	1.556	1.539
O	C7	1.220	1.213
S	C6	1.812	1.810
C4	C3	1.519	1.549
C7	C6	1.501	1.507
C7	N4	1.348	1.348
C2	C3	1.526	1.543
O1	C13	1.416	1.344
O1	C10	1.403	1.343
C6	C8	1.501	1.530
C13	C12	1.363	1.345
C9	C10	1.494	1.506
C9	N4	1.455	1.464
C10	C11	1.353	1.345
C12	C11	1.382	1.414
C1	H	1.100	1.089
C2	H2	1.100	1.090
C2	H1	1.100	1.090
C3	H4	1.100	1.090
C3	H3	1.100	1.090
C4	H5	1.100	1.090
C4	H6	1.100	1.090
N4	H13	1.000	0.970
C5	H8	1.100	1.090
C5	H7	1.100	1.090
C6	H9	1.100	1.091
C8	H12	1.100	1.090
C8	H11	1.100	1.089
C8	H10	1.100	1.090
C9	H15	1.100	1.090
C9	H14	1.101	1.090
C11	H16	1.080	1.080
C12	H17	1.080	1.080
C13	H18	1.080	1.080

Bond Angles for C05

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	N	N3	104.2	106.8
N	N3	C	108.4	105.2
N	N3	C1	121.8	127.4
N3	C1	H	108.2	110.0
C	S	C6	101.1	100.0
C5	C1	H	107.9	110.1
C5	C4	H5	110.0	110.8
C5	C4	H6	110.0	110.9
C1	C2	C3	107.6	106.6
C2	C1	H	107.6	110.0
C1	C2	H2	109.9	110.0
C1	C2	H1	109.9	110.1
O	C7	C6	123.5	120.0
O	C7	N4	122.2	120.0
S	C6	C8	111.0	109.5
S	C6	H9	106.0	109.5
C4	C3	H4	110.1	110.5
C4	C3	H3	110.1	110.6
C7	C6	C8	108.7	109.5
C7	C6	H9	109.4	109.5
C7	N4	H13	118.4	120.0
C3	C2	H2	109.9	110.0
C3	C2	H1	109.9	110.0
C2	C3	H4	110.0	110.4
C2	C3	H3	110.0	110.5
C10	O1	C13	99.0	109.5
O1	C13	C12	113.6	108.4
O1	C13	H18	123.2	125.7
O1	C10	C9	121.3	125.8
O1	C10	C11	114.8	108.4
C8	C6	H9	109.4	109.4
C6	C8	H12	109.5	109.5
C6	C8	H11	109.4	109.5
C6	C8	H10	109.5	109.5
C13	C12	H17	126.8	126.6
C9	C10	C11	123.9	125.8
C10	C9	H15	109.2	109.5
C10	C9	H14	109.2	109.5
C9	N4	H13	118.3	120.0
C10	C11	H16	126.9	126.6
C12	C11	H16	126.9	126.5
H2	C2	H1	109.5	110.1
H4	C3	H3	109.5	110.4
H5	C4	H6	109.5	110.7
H8	C5	H7	109.5	110.5
H12	C8	H11	109.5	109.5
H12	C8	H10	109.4	109.4
H11	C8	H10	109.5	109.5
H15	C9	H14	109.5	109.4

Torsion Angles for C05

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	N	N3	C	1.6	0.0
N1	N	N3	C1	181.9	179.9
N2	N1	N	N3	359.1	0.0
N	N3	C1	H	347.2	178.7
N	N3	C	N2	358.0	359.9
N2	C	S	C6	306.5	0.0
N	N3	C	C1	180.3	179.9
N3	C	S	C6	126.5	179.9
N	N3	C1	C	179.6	180.2
C5	C1	N3	H	239.8	238.6
C2	C1	N3	H	118.5	121.4
N3	C1	C2	H2	245.5	238.5
N3	C1	C2	H1	6.0	0.0
N	N3	C	S	178.0	180.0
C	S	C6	C8	224.5	295.0
C	S	C6	H9	343.2	55.0
N3	C1	C5	H	120.4	121.4
C2	C1	C5	H	244.7	240.7
C5	C1	C2	H2	119.8	119.3
C5	C1	C2	H1	240.4	240.8
C4	C5	C1	H	103.1	95.6
C5	C4	C3	H4	99.8	203.4
C5	C4	C3	H3	220.6	80.8
H5	C4	C5	H6	239.3	123.3
N	N3	C1	C2	105.7	300.1
N3	C1	C2	H	241.1	238.6
C5	C1	C2	H	115.5	119.3
C3	C2	C1	H2	240.3	240.8
C3	C2	C1	H1	119.7	119.3
C1	C2	C3	H4	252.5	142.3
C1	C2	C3	H3	131.8	264.7
H2	C2	C1	H1	239.4	238.5
O	C7	C6	C8	249.8	265.0
O	C7	C6	H9	130.5	145.0
O	C7	N4	H13	185.0	180.0
O	C7	C6	S	13.1	25.0
C7	C6	S	C8	238.1	240.0
C7	C6	S	H9	119.4	120.0
C8	C6	S	H9	241.3	240.1
S	C6	C8	H12	180.0	300.0
S	C6	C8	H11	300.0	60.0
S	C6	C8	H10	60.0	180.0
C4	C3	C2	H2	252.4	264.4
C4	C3	C2	H1	131.8	142.9
C2	C3	C4	H4	240.4	118.6
C2	C3	C4	H3	119.6	241.2
H4	C3	C4	H3	239.3	122.6
O	C7	C6	N4	180.2	179.9
S	C6	C7	C8	123.2	120.0
S	C6	C7	H9	242.6	240.0
C6	C7	N4	H13	5.3	359.9
C8	C6	C7	H9	119.4	120.0
C7	C6	C8	H12	304.0	60.0
C7	C6	C8	H11	64.1	180.0
C7	C6	C8	H10	184.1	300.1
O	C7	N4	C6	179.8	180.1
C9	N4	C7	H13	180.0	180.1
C3	C2	C1	H	244.6	240.7
C1	C2	C3	H2	119.7	119.2
C1	C2	C3	H1	240.3	240.7
C4	C3	C2	H4	119.6	241.3
C4	C3	C2	H3	240.3	118.9
H2	C2	C3	H1	120.6	121.5
H4	C3	C2	H3	120.7	237.6
C13	O1	C10	C9	180.2	180.0
C13	O1	C10	C11	0.0	0.0
O1	C13	C12	H17	180.0	180.0
C10	O1	C13	C12	360.0	360.0
C10	O1	C13	H18	180.0	180.0
C9	C10	O1	C11	180.2	180.0
O1	C10	C9	H15	138.7	150.0
O1	C10	C9	H14	258.4	30.0
O1	C10	C11	H16	180.0	180.0
S	C6	C8	H9	116.6	120.0
C7	C6	C8	H9	240.6	240.0
H12	C8	C6	H11	240.0	240.0
H12	C8	C6	H10	120.0	119.9
H11	C8	C6	H10	240.0	240.0
O1	C13	C12	H18	180.0	180.1
C13	C12	C11	H16	180.0	180.0
C9	C10	O1	C13	180.2	180.0
O1	C10	C9	C11	179.8	180.0
C10	C9	N4	H13	33.4	0.1
C9	C10	C11	H16	359.8	359.9
H15	C9	C10	H14	240.3	120.0
C7	N4	C9	H13	180.0	179.9
O1	C10	C9	N4	18.6	270.0
C11	C10	O1	C13	0.0	0.0
O1	C10	C11	C9	180.2	180.0
C11	C10	C9	H15	318.9	330.0
C11	C10	C9	H14	78.6	210.0
C12	C11	C10	H16	180.0	180.0
O1	C13	C12	C11	0.0	0.0
C10	C11	C12	H16	180.0	180.0
H	C1	C2	C3	244.6	240.7
H	C1	C2	H2	4.3	359.9
H	C1	C2	H1	124.9	121.4
C1	C2	H2	C3	241.7	242.9
H2	C2	C1	H	4.3	359.9
C1	C2	H2	H1	120.8	121.5
C3	C2	H2	H1	239.2	238.6
H2	C2	C3	H4	132.8	23.0
H2	C2	C3	H3	12.1	145.5
C1	C2	H1	C3	118.3	117.1
H1	C2	C1	H	124.9	121.4
C1	C2	H1	H2	239.2	238.5
C3	C2	H1	H2	120.9	121.4
H1	C2	C3	H4	12.2	261.6
H1	C2	C3	H3	251.5	24.0
C4	C3	H4	H3	121.1	237.3
H4	C3	C2	H2	132.8	23.0
H4	C3	C2	H1	12.2	261.6
C2	C3	H4	H3	239.0	122.5
C4	C3	H3	H4	238.9	122.7
H3	C3	C2	H2	12.1	145.5
H3	C3	C2	H1	251.5	24.0
C2	C3	H3	H4	121.0	237.5
C5	C4	H5	H6	121.0	236.5
H5	C4	C3	H4	340.1	321.8
H5	C4	C3	H3	100.9	199.2
C5	C4	H6	H5	238.9	123.4
H6	C4	C3	H4	219.4	84.9
H6	C4	C3	H3	340.2	322.3
H8	C5	C1	H	222.7	214.4
H8	C5	C4	H5	19.9	160.9
H8	C5	C4	H6	140.6	37.6
H7	C5	C1	H	343.4	337.0
H7	C5	C4	H5	259.2	38.3
H7	C5	C4	H6	20.0	275.0
S	C6	H9	C8	240.3	240.0
C7	C6	H9	C8	118.9	120.0
H9	C6	C8	H12	63.4	180.0
H9	C6	C8	H11	183.5	300.0
H9	C6	C8	H10	303.4	60.1
H12	C8	C6	H9	63.4	180.0
C6	C8	H12	H11	120.0	120.0
C6	C8	H12	H10	240.0	240.0
H11	C8	H12	H10	120.0	120.0
H11	C8	C6	H9	183.5	300.0
C6	C8	H11	H12	240.0	240.0
C6	C8	H11	H10	120.0	120.0
H12	C8	H11	H10	240.0	240.0
H10	C8	C6	H9	303.4	60.1
C6	C8	H10	H12	120.0	120.0
C6	C8	H10	H11	240.0	240.0
H12	C8	H10	H11	120.0	120.0
H15	C9	C10	C11	318.9	330.0
C10	C9	H15	H14	119.5	240.0
H15	C9	N4	H13	273.3	120.1
H14	C9	C10	C11	78.6	210.0
C10	C9	H14	H15	240.5	120.0
H14	C9	N4	H13	153.6	240.0
H17	C12	C11	H16	360.0	360.0
O1	C13	H18	C12	180.0	179.9
H18	C13	C12	H17	0.0	360.0