PDB Chemical Component C
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for C
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP3 |
P |
1.598 |
1.610 |
| OP3 |
HOP3 |
0.951 |
0.967 |
| P |
OP1 |
1.459 |
1.479 |
| P |
OP2 |
1.478 |
1.610 |
| P |
O5' |
1.579 |
1.610 |
| OP2 |
HOP2 |
0.951 |
0.965 |
| O5' |
C5' |
1.439 |
1.427 |
| C5' |
C4' |
1.497 |
1.529 |
| C5' |
H5' |
1.115 |
1.089 |
| C5' |
H5'' |
1.116 |
1.091 |
| C4' |
O4' |
1.485 |
1.445 |
| C4' |
C3' |
1.533 |
1.544 |
| C4' |
H4' |
1.115 |
1.090 |
| O4' |
C1' |
1.440 |
1.444 |
| C3' |
O3' |
1.409 |
1.429 |
| C3' |
C2' |
1.491 |
1.547 |
| C3' |
H3' |
1.116 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C2' |
O2' |
1.386 |
1.429 |
| C2' |
C1' |
1.496 |
1.544 |
| C2' |
H2' |
1.115 |
1.089 |
| O2' |
HO2' |
0.950 |
0.966 |
| C1' |
N1 |
1.502 |
1.465 |
| C1' |
H1' |
1.115 |
1.090 |
| N1 |
C2 |
1.346 |
1.344 |
| N1 |
C6 |
1.358 |
1.362 |
| C2 |
O2 |
1.282 |
1.220 |
| C2 |
N3 |
1.372 |
1.332 |
| N3 |
C4 |
1.303 |
1.326 |
| C4 |
N4 |
1.361 |
1.375 |
| C4 |
C5 |
1.460 |
1.410 |
| N4 |
H41 |
1.020 |
0.970 |
| N4 |
H42 |
1.020 |
0.969 |
| C5 |
C6 |
1.321 |
1.354 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.080 |
Bond Angles for C
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| P |
OP3 |
HOP3 |
106.3 |
106.8 |
| OP3 |
P |
OP1 |
106.3 |
109.5 |
| OP3 |
P |
OP2 |
109.2 |
109.4 |
| OP3 |
P |
O5' |
103.3 |
109.5 |
| OP1 |
P |
OP2 |
119.7 |
109.5 |
| OP1 |
P |
O5' |
110.4 |
109.5 |
| OP2 |
P |
O5' |
106.7 |
109.4 |
| P |
OP2 |
HOP2 |
119.8 |
106.9 |
| P |
O5' |
C5' |
122.6 |
106.8 |
| O5' |
C5' |
C4' |
108.6 |
109.5 |
| O5' |
C5' |
H5' |
112.5 |
109.4 |
| O5' |
C5' |
H5'' |
112.5 |
109.5 |
| C4' |
C5' |
H5' |
112.6 |
109.5 |
| C4' |
C5' |
H5'' |
112.6 |
109.4 |
| C5' |
C4' |
O4' |
108.2 |
110.4 |
| C5' |
C4' |
C3' |
119.0 |
110.6 |
| C5' |
C4' |
H4' |
102.2 |
110.3 |
| H5' |
C5' |
H5'' |
97.9 |
109.5 |
| O4' |
C4' |
C3' |
104.1 |
104.8 |
| O4' |
C4' |
H4' |
117.6 |
110.3 |
| C4' |
O4' |
C1' |
105.5 |
105.2 |
| C3' |
C4' |
H4' |
106.5 |
110.3 |
| C4' |
C3' |
O3' |
108.3 |
110.5 |
| C4' |
C3' |
C2' |
99.4 |
104.1 |
| C4' |
C3' |
H3' |
119.1 |
110.4 |
| O4' |
C1' |
C2' |
108.2 |
104.9 |
| O4' |
C1' |
N1 |
108.8 |
110.4 |
| O4' |
C1' |
H1' |
111.6 |
110.4 |
| O3' |
C3' |
C2' |
116.5 |
110.6 |
| O3' |
C3' |
H3' |
103.0 |
110.5 |
| C3' |
O3' |
HO3' |
108.2 |
106.8 |
| C2' |
C3' |
H3' |
111.3 |
110.6 |
| C3' |
C2' |
O2' |
111.7 |
110.5 |
| C3' |
C2' |
C1' |
101.8 |
104.0 |
| C3' |
C2' |
H2' |
112.6 |
110.5 |
| O2' |
C2' |
C1' |
108.1 |
110.8 |
| O2' |
C2' |
H2' |
106.9 |
110.4 |
| C2' |
O2' |
HO2' |
111.6 |
106.9 |
| C1' |
C2' |
H2' |
115.9 |
110.4 |
| C2' |
C1' |
N1 |
112.1 |
110.4 |
| C2' |
C1' |
H1' |
108.4 |
110.3 |
| N1 |
C1' |
H1' |
107.7 |
110.3 |
| C1' |
N1 |
C2 |
118.7 |
119.8 |
| C1' |
N1 |
C6 |
119.7 |
119.8 |
| C2 |
N1 |
C6 |
121.7 |
120.4 |
| N1 |
C2 |
O2 |
119.6 |
119.5 |
| N1 |
C2 |
N3 |
121.7 |
121.1 |
| N1 |
C6 |
C5 |
119.7 |
119.2 |
| N1 |
C6 |
H6 |
121.5 |
120.4 |
| O2 |
C2 |
N3 |
118.7 |
119.4 |
| C2 |
N3 |
C4 |
116.4 |
120.7 |
| N3 |
C4 |
N4 |
119.7 |
120.2 |
| N3 |
C4 |
C5 |
123.6 |
119.6 |
| N4 |
C4 |
C5 |
116.8 |
120.2 |
| C4 |
N4 |
H41 |
116.8 |
120.0 |
| C4 |
N4 |
H42 |
109.6 |
120.1 |
| C4 |
C5 |
C6 |
116.9 |
119.0 |
| C4 |
C5 |
H5 |
126.2 |
120.5 |
| H41 |
N4 |
H42 |
109.5 |
119.9 |
| C6 |
C5 |
H5 |
116.9 |
120.5 |
| C5 |
C6 |
H6 |
118.8 |
120.3 |
Torsion Angles for C
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP3 |
OP2 |
130.5 |
240.0 |
| OP1 |
P |
OP3 |
O5' |
243.7 |
120.0 |
| OP2 |
P |
OP3 |
O5' |
113.2 |
240.1 |
| OP3 |
P |
OP2 |
HOP2 |
302.8 |
60.0 |
| OP3 |
P |
O5' |
C5' |
296.6 |
180.0 |
| HOP3 |
OP3 |
P |
OP1 |
179.9 |
300.0 |
| HOP3 |
OP3 |
P |
OP2 |
49.5 |
60.1 |
| HOP3 |
OP3 |
P |
O5' |
296.2 |
180.0 |
| OP1 |
P |
OP3 |
HOP3 |
179.9 |
300.0 |
| OP3 |
P |
OP1 |
OP2 |
235.8 |
120.0 |
| OP3 |
P |
OP1 |
O5' |
111.4 |
240.0 |
| OP2 |
P |
OP1 |
O5' |
235.6 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
180.1 |
180.0 |
| OP1 |
P |
O5' |
C5' |
49.9 |
60.0 |
| OP2 |
P |
OP3 |
HOP3 |
49.5 |
60.1 |
| OP3 |
P |
OP2 |
OP1 |
122.8 |
240.0 |
| OP3 |
P |
OP2 |
O5' |
249.0 |
119.9 |
| OP1 |
P |
OP2 |
O5' |
126.2 |
240.0 |
| OP2 |
P |
O5' |
C5' |
181.5 |
299.9 |
| O5' |
P |
OP3 |
HOP3 |
296.2 |
180.0 |
| OP3 |
P |
O5' |
OP1 |
246.7 |
120.1 |
| OP3 |
P |
O5' |
OP2 |
115.1 |
240.1 |
| OP1 |
P |
O5' |
OP2 |
228.4 |
120.1 |
| O5' |
P |
OP2 |
HOP2 |
53.9 |
300.1 |
| P |
O5' |
C5' |
C4' |
176.3 |
180.0 |
| P |
O5' |
C5' |
H5' |
301.6 |
60.0 |
| P |
O5' |
C5' |
H5'' |
51.0 |
300.0 |
| HOP2 |
OP2 |
P |
O5' |
53.9 |
300.1 |
| C4' |
C5' |
O5' |
H5' |
234.7 |
120.0 |
| C4' |
C5' |
O5' |
H5'' |
125.3 |
240.0 |
| O5' |
C5' |
C4' |
O4' |
285.5 |
61.4 |
| O5' |
C5' |
C4' |
C3' |
44.0 |
176.9 |
| O5' |
C5' |
C4' |
H4' |
160.8 |
299.2 |
| H5' |
C5' |
O5' |
H5'' |
250.6 |
120.0 |
| O5' |
C5' |
C4' |
H5' |
125.2 |
240.0 |
| O5' |
C5' |
C4' |
H5'' |
234.7 |
120.0 |
| H5' |
C5' |
C4' |
H5'' |
109.5 |
240.0 |
| O4' |
C4' |
C5' |
C3' |
241.6 |
244.5 |
| O4' |
C4' |
C5' |
H4' |
124.7 |
122.2 |
| C5' |
C4' |
O4' |
C1' |
150.7 |
159.5 |
| C3' |
C4' |
C5' |
H4' |
243.1 |
237.7 |
| C5' |
C4' |
C3' |
O3' |
75.5 |
98.3 |
| C5' |
C4' |
C3' |
C2' |
197.6 |
217.1 |
| C5' |
C4' |
C3' |
H3' |
318.5 |
335.8 |
| O5' |
C5' |
H5' |
C4' |
236.9 |
120.1 |
| O5' |
C5' |
H5' |
H5'' |
118.4 |
240.0 |
| C4' |
C5' |
H5' |
H5'' |
241.5 |
119.9 |
| H5' |
C5' |
C4' |
O4' |
160.3 |
181.4 |
| H5' |
C5' |
C4' |
C3' |
278.7 |
296.9 |
| H5' |
C5' |
C4' |
H4' |
35.6 |
59.2 |
| O5' |
C5' |
H5'' |
C4' |
123.1 |
239.9 |
| O5' |
C5' |
H5'' |
H5' |
241.6 |
120.0 |
| C4' |
C5' |
H5'' |
H5' |
118.5 |
240.0 |
| H5'' |
C5' |
C4' |
O4' |
50.8 |
301.4 |
| H5'' |
C5' |
C4' |
C3' |
169.2 |
56.9 |
| H5'' |
C5' |
C4' |
H4' |
286.1 |
179.2 |
| O4' |
C4' |
C5' |
H5' |
160.3 |
181.4 |
| O4' |
C4' |
C5' |
H5'' |
50.8 |
301.4 |
| C5' |
C4' |
O4' |
C3' |
127.5 |
119.1 |
| C5' |
C4' |
O4' |
H4' |
245.0 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
117.5 |
118.8 |
| O4' |
C4' |
C3' |
O3' |
196.1 |
217.2 |
| O4' |
C4' |
C3' |
C2' |
318.1 |
336.0 |
| O4' |
C4' |
C3' |
H3' |
79.0 |
94.7 |
| C4' |
O4' |
C1' |
C2' |
5.0 |
319.6 |
| C4' |
O4' |
C1' |
N1 |
242.9 |
200.7 |
| C4' |
O4' |
C1' |
H1' |
124.2 |
78.5 |
| C3' |
C4' |
C5' |
H5' |
278.7 |
296.9 |
| C3' |
C4' |
C5' |
H5'' |
169.2 |
56.9 |
| C5' |
C4' |
C3' |
O4' |
239.5 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
114.6 |
122.3 |
| O4' |
C4' |
C3' |
H4' |
235.1 |
241.2 |
| C3' |
C4' |
O4' |
C1' |
23.1 |
40.5 |
| O3' |
C3' |
C4' |
C2' |
238.0 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
117.0 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
239.1 |
241.3 |
| C4' |
C3' |
C2' |
O2' |
288.7 |
241.1 |
| C4' |
C3' |
C2' |
C1' |
43.8 |
0.1 |
| C4' |
C3' |
C2' |
H2' |
168.5 |
118.6 |
| H4' |
C4' |
C5' |
H5' |
35.6 |
59.2 |
| H4' |
C4' |
C5' |
H5'' |
286.1 |
179.2 |
| C5' |
C4' |
H4' |
O4' |
118.2 |
122.2 |
| C5' |
C4' |
H4' |
C3' |
234.5 |
237.6 |
| O4' |
C4' |
H4' |
C3' |
116.2 |
115.4 |
| H4' |
C4' |
O4' |
C1' |
265.6 |
281.7 |
| H4' |
C4' |
C3' |
O3' |
321.0 |
336.0 |
| H4' |
C4' |
C3' |
C2' |
83.0 |
94.7 |
| H4' |
C4' |
C3' |
H3' |
204.0 |
213.4 |
| C1' |
O4' |
C4' |
C3' |
23.1 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
265.6 |
281.7 |
| C3' |
C2' |
C1' |
O4' |
328.3 |
23.9 |
| O2' |
C2' |
C1' |
O4' |
85.9 |
142.6 |
| O4' |
C1' |
C2' |
H2' |
205.8 |
265.3 |
| C2' |
C1' |
O4' |
N1 |
122.0 |
118.9 |
| C2' |
C1' |
O4' |
H1' |
240.8 |
241.1 |
| N1 |
C1' |
O4' |
H1' |
118.7 |
122.2 |
| O4' |
C1' |
N1 |
C2 |
204.1 |
57.0 |
| O4' |
C1' |
N1 |
C6 |
26.0 |
237.0 |
| O3' |
C3' |
C4' |
H4' |
321.0 |
336.0 |
| C4' |
C3' |
O3' |
C2' |
110.8 |
114.7 |
| C4' |
C3' |
O3' |
H3' |
233.0 |
237.5 |
| C2' |
C3' |
O3' |
H3' |
122.1 |
122.8 |
| O3' |
C3' |
C2' |
O2' |
44.6 |
359.8 |
| O3' |
C3' |
C2' |
C1' |
159.7 |
118.8 |
| O3' |
C3' |
C2' |
H2' |
284.4 |
237.3 |
| C2' |
C3' |
C4' |
H4' |
83.0 |
94.7 |
| C4' |
C3' |
C2' |
O3' |
244.1 |
241.3 |
| C4' |
C3' |
C2' |
H3' |
126.5 |
118.6 |
| O4' |
C1' |
C2' |
C3' |
328.3 |
23.9 |
| O3' |
C3' |
C2' |
H3' |
242.4 |
237.3 |
| C2' |
C3' |
O3' |
HO3' |
69.2 |
65.3 |
| O2' |
C2' |
C3' |
C1' |
244.9 |
241.0 |
| O2' |
C2' |
C3' |
H2' |
120.2 |
122.5 |
| C3' |
C2' |
O2' |
HO2' |
180.0 |
298.6 |
| C1' |
C2' |
C3' |
H2' |
235.3 |
241.5 |
| C3' |
C2' |
C1' |
N1 |
88.3 |
142.8 |
| C3' |
C2' |
C1' |
H1' |
207.0 |
265.0 |
| H3' |
C3' |
C4' |
H4' |
204.0 |
213.4 |
| C4' |
C3' |
H3' |
O3' |
119.8 |
122.6 |
| C4' |
C3' |
H3' |
C2' |
245.3 |
245.3 |
| O3' |
C3' |
H3' |
C2' |
125.5 |
122.8 |
| H3' |
C3' |
O3' |
HO3' |
307.1 |
302.6 |
| H3' |
C3' |
C2' |
O2' |
162.2 |
122.5 |
| H3' |
C3' |
C2' |
C1' |
277.3 |
241.5 |
| H3' |
C3' |
C2' |
H2' |
42.1 |
0.0 |
| HO3' |
O3' |
C3' |
C2' |
69.2 |
65.3 |
| HO3' |
O3' |
C3' |
H3' |
307.1 |
302.6 |
| O4' |
C1' |
C2' |
O2' |
85.9 |
142.6 |
| O2' |
C2' |
C3' |
H3' |
162.2 |
122.5 |
| C3' |
C2' |
O2' |
C1' |
111.1 |
114.7 |
| C3' |
C2' |
O2' |
H2' |
236.5 |
237.4 |
| C1' |
C2' |
O2' |
H2' |
125.4 |
122.7 |
| O2' |
C2' |
C1' |
N1 |
206.0 |
261.5 |
| O2' |
C2' |
C1' |
H1' |
324.7 |
23.7 |
| O4' |
C1' |
C2' |
N1 |
240.0 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
121.2 |
118.9 |
| C1' |
C2' |
C3' |
H3' |
277.3 |
241.5 |
| C3' |
C2' |
C1' |
O2' |
242.3 |
241.3 |
| C3' |
C2' |
C1' |
H2' |
122.5 |
118.6 |
| O2' |
C2' |
C1' |
H2' |
240.2 |
237.3 |
| C1' |
C2' |
O2' |
HO2' |
68.8 |
183.9 |
| N1 |
C1' |
C2' |
H1' |
241.2 |
237.8 |
| C2' |
C1' |
N1 |
C2 |
84.4 |
301.5 |
| C2' |
C1' |
N1 |
C6 |
266.4 |
121.5 |
| H2' |
C2' |
C3' |
H3' |
42.1 |
0.0 |
| C3' |
C2' |
H2' |
O2' |
122.9 |
122.5 |
| C3' |
C2' |
H2' |
C1' |
243.4 |
245.5 |
| O2' |
C2' |
H2' |
C1' |
120.5 |
123.0 |
| H2' |
C2' |
O2' |
HO2' |
303.5 |
61.2 |
| H2' |
C2' |
C1' |
N1 |
325.8 |
24.2 |
| H2' |
C2' |
C1' |
H1' |
84.5 |
146.4 |
| HO2' |
O2' |
C2' |
C1' |
68.8 |
183.9 |
| HO2' |
O2' |
C2' |
H2' |
303.5 |
61.2 |
| O4' |
C1' |
N1 |
C2' |
119.6 |
115.5 |
| O4' |
C1' |
N1 |
H1' |
238.8 |
237.7 |
| N1 |
C1' |
C2' |
H2' |
325.8 |
24.2 |
| C2' |
C1' |
N1 |
H1' |
119.2 |
122.2 |
| C2 |
N1 |
C1' |
C6 |
178.0 |
180.0 |
| C1' |
N1 |
C2 |
O2 |
0.7 |
0.0 |
| C1' |
N1 |
C2 |
N3 |
181.1 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
180.2 |
179.7 |
| C1' |
N1 |
C6 |
H6 |
0.1 |
0.1 |
| O4' |
C1' |
H1' |
C2' |
240.9 |
244.5 |
| O4' |
C1' |
H1' |
N1 |
119.4 |
122.3 |
| H1' |
C1' |
C2' |
H2' |
84.5 |
146.4 |
| C2' |
C1' |
H1' |
N1 |
238.5 |
237.8 |
| H1' |
C1' |
N1 |
C2 |
325.2 |
179.3 |
| H1' |
C1' |
N1 |
C6 |
147.2 |
359.3 |
| C2 |
N1 |
C1' |
H1' |
325.2 |
179.3 |
| C1' |
N1 |
C2 |
C6 |
182.0 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
2.2 |
359.6 |
| C2 |
N1 |
C6 |
H6 |
182.1 |
180.1 |
| O2 |
C2 |
N1 |
N3 |
179.5 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
359.7 |
0.0 |
| C6 |
N1 |
C1' |
H1' |
147.2 |
359.3 |
| C1' |
N1 |
C6 |
C2 |
178.0 |
180.0 |
| C6 |
N1 |
C2 |
O2 |
178.7 |
180.1 |
| C6 |
N1 |
C2 |
N3 |
359.1 |
0.1 |
| C4 |
C5 |
C6 |
N1 |
357.9 |
0.6 |
| N1 |
C6 |
C5 |
H5 |
177.8 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.6 |
| O2 |
C2 |
N1 |
C6 |
178.7 |
180.1 |
| N1 |
C2 |
O2 |
N3 |
180.4 |
180.0 |
| O2 |
C2 |
N3 |
C4 |
180.1 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
359.1 |
0.1 |
| N1 |
C2 |
N3 |
O2 |
179.5 |
180.0 |
| C2 |
N3 |
C4 |
N4 |
180.8 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.3 |
0.2 |
| N4 |
C4 |
N3 |
C5 |
180.5 |
179.8 |
| N3 |
C4 |
N4 |
H41 |
359.5 |
360.0 |
| N3 |
C4 |
N4 |
H42 |
234.3 |
179.7 |
| N3 |
C4 |
C5 |
C6 |
1.0 |
359.5 |
| N3 |
C4 |
C5 |
H5 |
181.0 |
180.0 |
| N3 |
C4 |
N4 |
C5 |
179.5 |
180.2 |
| N4 |
C4 |
C5 |
C6 |
180.5 |
179.7 |
| N4 |
C4 |
C5 |
H5 |
0.6 |
0.3 |
| H41 |
N4 |
C4 |
H42 |
125.3 |
180.3 |
| N1 |
C6 |
C5 |
C4 |
357.9 |
0.6 |
| N3 |
C4 |
C5 |
N4 |
180.5 |
179.8 |
| C5 |
C4 |
N4 |
H41 |
180.0 |
179.7 |
| C5 |
C4 |
N4 |
H42 |
54.7 |
359.5 |
| C6 |
C5 |
C4 |
H5 |
179.9 |
179.4 |
| C4 |
C5 |
C6 |
H6 |
177.9 |
180.2 |
| H41 |
N4 |
C4 |
C5 |
180.0 |
179.7 |
| C4 |
N4 |
H41 |
H42 |
234.7 |
179.7 |
| H42 |
N4 |
C4 |
C5 |
54.7 |
359.5 |
| C4 |
N4 |
H42 |
H41 |
129.4 |
180.3 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.4 |
| C4 |
C5 |
C6 |
H5 |
180.1 |
180.6 |
| C4 |
C5 |
H5 |
C6 |
179.9 |
179.4 |
| H5 |
C5 |
C6 |
H6 |
357.9 |
359.6 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.6 |
| H6 |
C6 |
C5 |
H5 |
357.9 |
359.6 |