PDB Chemical Component BZG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BZG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.481 1.610
P O2P 1.475 1.480
P O5' 1.604 1.611
P OXT 1.591 1.610
O1P H1P 0.950 0.967
O5' C5' 1.413 1.429
CZ1 CT1 1.393 1.383
CZ1 CE 1.387 1.382
CZ1 HZ1 1.080 1.080
CT1 CI 1.388 1.382
CT1 HT1 1.080 1.080
CI CT2 1.393 1.382
CI HI 1.081 1.080
CT2 CZ2 1.388 1.382
CT2 HT2 1.080 1.080
CZ2 CE 1.393 1.382
CZ2 HZ2 1.080 1.081
CE CW 1.391 1.507
CW OL 1.432 1.430
CW HWC1 1.100 1.089
CW HWC2 1.100 1.090
OL CK 1.363 1.354
CK NJ 1.338 1.326
CK CM 1.389 1.403
NJ CH 1.343 1.327
CH NI 1.331 1.385
CH NG 1.338 1.323
NI HIN1 1.000 0.970
NI HIN2 1.000 0.970
NG CF 1.339 1.328
CF CM 1.391 1.406
CF NE 1.329 1.371
CM NN 1.328 1.356
NN CO 1.329 1.301
CO NE 1.333 1.364
CO HO 1.080 1.080
NE CT' 1.479 1.465
CT' OS' 1.434 1.444
CT' CP' 1.528 1.545
CT' HT' 1.100 1.091
OS' C4' 1.437 1.444
CP' C3' 1.529 1.545
CP' HP'1 1.100 1.090
CP' HP'2 1.100 1.090
C5' C4' 1.527 1.529
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' C3' 1.525 1.545
C4' H4' 1.100 1.091
C3' O3' 1.428 1.428
C3' H3' 1.100 1.090
O3' HA 0.950 0.967
OXT HOT 0.950 0.967

Bond Angles for BZG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 110.9 109.5
O1P P O5' 111.7 109.4
O1P P OXT 112.4 109.5
P O1P H1P 109.5 114.0
O2P P O5' 108.2 109.4
O2P P OXT 110.2 109.5
O5' P OXT 103.2 109.5
P O5' C5' 119.0 123.0
P OXT HOT 109.5 114.0
O5' C5' C4' 109.4 109.5
O5' C5' H5'1 109.5 109.5
O5' C5' H5'2 109.5 109.4
CT1 CZ1 CE 120.0 120.0
CT1 CZ1 HZ1 120.0 120.0
CZ1 CT1 CI 120.0 120.0
CZ1 CT1 HT1 120.0 120.0
CE CZ1 HZ1 120.0 120.0
CZ1 CE CZ2 119.9 120.0
CZ1 CE CW 120.4 120.0
CI CT1 HT1 120.0 120.0
CT1 CI CT2 120.0 120.0
CT1 CI HI 120.0 120.0
CT2 CI HI 120.0 120.0
CI CT2 CZ2 119.9 120.0
CI CT2 HT2 120.0 120.0
CZ2 CT2 HT2 120.0 120.0
CT2 CZ2 CE 120.1 120.0
CT2 CZ2 HZ2 119.9 120.0
CE CZ2 HZ2 119.9 120.0
CZ2 CE CW 119.6 120.0
CE CW OL 117.5 109.5
CE CW HWC1 107.4 109.5
CE CW HWC2 107.4 109.5
OL CW HWC1 107.4 109.4
OL CW HWC2 107.4 109.5
CW OL CK 114.1 117.0
HWC1 CW HWC2 109.5 109.5
OL CK NJ 119.4 120.8
OL CK CM 120.3 120.7
NJ CK CM 119.4 118.6
CK NJ CH 120.7 121.2
CK CM CF 118.7 118.3
CK CM NN 134.1 134.6
NJ CH NI 119.5 118.9
NJ CH NG 121.2 122.2
NI CH NG 119.3 118.9
CH NI HIN1 109.5 120.0
CH NI HIN2 109.4 120.0
CH NG CF 120.5 120.5
HIN1 NI HIN2 109.4 120.0
NG CF CM 119.6 119.1
NG CF NE 133.2 134.9
CM CF NE 107.2 106.0
CF CM NN 107.2 107.1
CF NE CO 108.0 107.5
CF NE CT' 126.2 126.3
CM NN CO 108.1 109.5
NN CO NE 109.6 109.9
NN CO HO 125.2 125.0
NE CO HO 125.2 125.1
CO NE CT' 125.3 126.2
NE CT' OS' 108.1 110.4
NE CT' CP' 113.1 110.4
NE CT' HT' 111.1 110.2
OS' CT' CP' 102.0 104.8
OS' CT' HT' 111.8 110.4
CT' OS' C4' 104.4 105.3
CP' CT' HT' 110.4 110.5
CT' CP' C3' 100.7 104.1
CT' CP' HP'1 111.6 110.5
CT' CP' HP'2 111.6 110.5
OS' C4' C5' 110.5 110.4
OS' C4' C3' 106.2 104.8
OS' C4' H4' 109.5 110.3
C3' CP' HP'1 111.6 110.5
C3' CP' HP'2 111.6 110.5
CP' C3' C4' 104.1 104.1
CP' C3' O3' 111.2 110.5
CP' C3' H3' 110.9 110.5
HP'1 CP' HP'2 109.5 110.6
C4' C5' H5'1 109.5 109.5
C4' C5' H5'2 109.5 109.5
C5' C4' C3' 113.9 110.4
C5' C4' H4' 108.3 110.4
H5'1 C5' H5'2 109.5 109.4
C3' C4' H4' 108.3 110.4
C4' C3' O3' 107.0 110.5
C4' C3' H3' 110.9 110.5
O3' C3' H3' 112.4 110.6
C3' O3' HA 109.5 114.0

Torsion Angles for BZG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O5' 120.7 240.0
O2P P O1P OXT 236.2 120.0
O5' P O1P OXT 115.5 240.0
O1P P O5' C5' 164.3 185.0
O1P P OXT HOT 235.8 300.0
O1P P O2P O5' 237.2 120.0
O1P P O2P OXT 125.1 239.9
O2P P O1P H1P 360.0 60.0
O5' P O2P OXT 247.9 120.0
O2P P O5' C5' 42.0 305.0
O2P P OXT HOT 360.0 180.0
O1P P O5' O2P 122.3 240.0
O1P P O5' OXT 239.0 120.0
O5' P O1P H1P 239.3 180.0
O2P P O5' OXT 116.7 240.0
O5' P OXT HOT 115.3 60.0
P O5' C5' C4' 157.8 180.0
P O5' C5' H5'1 277.8 300.1
P O5' C5' H5'2 37.8 60.0
O1P P OXT O2P 235.8 120.0
O1P P OXT O5' 120.5 240.0
OXT P O1P H1P 123.8 300.0
O2P P OXT O5' 244.7 120.0
OXT P O5' C5' 285.3 64.9
H1P O1P P O2P 360.0 60.0
H1P O1P P O5' 239.3 180.0
H1P O1P P OXT 123.8 300.0
C5' O5' P OXT 285.3 64.9
OS' C4' C5' O5' 304.2 66.5
C4' C5' O5' H5'1 240.0 239.9
C4' C5' O5' H5'2 120.0 120.0
O5' C5' C4' C3' 63.6 181.9
O5' C5' C4' H4' 184.2 304.3
H5'1 C5' O5' H5'2 239.9 240.0
CE CZ1 CT1 HZ1 180.0 180.2
CT1 CZ1 CE CZ2 0.1 360.0
CT1 CZ1 CE CW 182.4 180.0
CI CT1 CZ1 HT1 180.0 180.0
CZ1 CT1 CI CT2 359.9 0.0
CZ1 CT1 CI HI 179.9 179.9
CT1 CZ1 CE HZ1 180.0 179.8
CE CZ1 CT1 CI 0.0 360.0
CE CZ1 CT1 HT1 180.0 180.0
CT2 CZ2 CE CZ1 359.9 0.1
CZ1 CE CZ2 HZ2 179.9 179.9
CZ2 CE CZ1 CW 177.7 180.0
CZ1 CE CW OL 117.4 90.0
CZ1 CE CW HWC1 238.5 210.0
CZ1 CE CW HWC2 356.2 330.0
CT1 CZ1 HZ1 CE 180.0 180.2
HZ1 CZ1 CT1 CI 180.0 179.8
HZ1 CZ1 CT1 HT1 0.0 359.7
HZ1 CZ1 CE CZ2 180.1 180.2
HZ1 CZ1 CE CW 2.3 0.2
CI CT1 CZ1 CE 0.0 360.0
CI CT1 CZ1 HZ1 180.0 179.8
CZ1 CT1 CI HT1 180.0 180.0
CT2 CI CT1 HI 180.0 180.1
CT1 CI CT2 CZ2 0.0 0.0
CT1 CI CT2 HT2 180.0 180.0
HT1 CT1 CZ1 CE 180.0 180.0
HT1 CT1 CZ1 HZ1 0.0 359.7
CZ1 CT1 HT1 CI 180.0 180.0
HT1 CT1 CI CT2 179.9 180.0
HT1 CT1 CI HI 359.9 360.0
CT2 CI CT1 HT1 179.9 180.0
CT1 CI CT2 HI 180.0 179.9
CZ2 CT2 CI HT2 180.0 180.0
CI CT2 CZ2 CE 0.1 359.9
CI CT2 CZ2 HZ2 180.0 180.1
HI CI CT1 HT1 359.9 360.0
CT1 CI HI CT2 180.0 180.1
HI CI CT2 CZ2 180.0 180.1
HI CI CT2 HT2 0.0 0.1
CZ1 CE CZ2 CT2 359.9 0.1
CZ2 CT2 CI HI 180.0 180.1
CI CT2 CZ2 HT2 180.0 180.0
CE CZ2 CT2 HZ2 180.0 179.9
CT2 CZ2 CE CW 177.6 180.1
HT2 CT2 CI HI 0.0 0.1
CI CT2 HT2 CZ2 180.0 180.0
HT2 CT2 CZ2 CE 180.1 180.0
HT2 CT2 CZ2 HZ2 0.0 0.1
CZ2 CE CZ1 HZ1 180.1 180.2
CZ1 CE CZ2 CW 182.3 180.0
CE CZ2 CT2 HT2 180.1 180.0
CT2 CZ2 CE HZ2 180.0 180.1
CZ2 CE CW OL 299.6 270.0
CZ2 CE CW HWC1 60.8 30.0
CZ2 CE CW HWC2 178.5 150.0
HZ2 CZ2 CT2 HT2 0.0 0.1
CT2 CZ2 HZ2 CE 180.0 179.9
HZ2 CZ2 CE CW 357.7 359.9
CW CE CZ1 HZ1 2.3 0.2
CZ1 CE CW CZ2 177.7 180.0
CW CE CZ2 HZ2 357.7 359.9
OL CW CE HWC1 238.9 240.0
OL CW CE HWC2 121.2 120.0
CE CW OL CK 182.3 180.0
HWC1 CW CE HWC2 242.3 240.0
CE CW OL HWC1 121.2 120.0
CE CW OL HWC2 238.8 240.0
HWC1 CW OL HWC2 117.7 120.0
CW OL CK NJ 258.0 0.0
CW OL CK CM 89.2 179.7
CE CW HWC1 OL 232.7 240.0
CE CW HWC1 HWC2 116.3 120.0
OL CW HWC1 HWC2 243.6 240.0
HWC1 CW OL CK 61.2 60.0
CE CW HWC2 OL 127.3 120.0
CE CW HWC2 HWC1 243.7 240.0
OL CW HWC2 HWC1 116.3 120.0
HWC2 CW OL CK 303.5 300.0
CK OL CW HWC1 61.2 60.0
CK OL CW HWC2 303.5 300.0
NJ CK OL CM 168.8 180.3
OL CK NJ CH 192.3 180.0
OL CK CM CF 167.2 179.8
OL CK CM NN 348.5 0.0
OL CK NJ CM 191.1 179.7
NJ CK CM CF 358.4 359.5
NJ CK CM NN 179.7 179.7
CK NJ CH NI 178.9 180.0
CK NJ CH NG 359.8 360.0
OL CK CM NJ 168.8 180.3
CM CK NJ CH 1.2 0.3
NG CF CM CK 1.0 0.5
CK CM CF NE 182.2 180.3
CF CM CK NN 178.7 179.8
CK CM NN CO 178.2 180.0
CH NJ CK CM 1.2 0.3
NI CH NJ NG 179.1 180.0
NJ CH NI HIN1 0.0 0.0
NJ CH NI HIN2 120.0 180.0
NJ CH NG CF 359.6 0.0
NJ CH NI NG 180.9 180.0
NI CH NG CF 180.5 180.0
HIN1 NI CH HIN2 240.0 180.0
NJ CH NG NI 179.1 180.0
NG CH NI HIN1 179.1 180.1
NG CH NI HIN2 299.1 0.1
CH NG CF CM 0.0 359.7
CH NG CF NE 178.5 180.0
HIN1 NI CH NG 179.1 180.1
CH NI HIN1 HIN2 120.0 180.0
HIN2 NI CH NG 299.1 0.1
CH NI HIN2 HIN1 240.0 180.0
CK CM CF NG 1.0 0.5
CM CF NG NE 181.5 179.7
NG CF CM NN 180.0 180.4
NG CF NE CO 180.1 179.3
NG CF NE CT' 351.6 360.0
CK CM CF NN 181.0 180.2
NG CF CM NE 178.8 180.2
CM CF NE CO 358.7 359.6
CM CF NE CT' 170.2 180.2
CF CM NN CO 359.4 0.2
NG CF NE CM 181.4 179.7
NE CF CM NN 1.2 0.1
NN CO NE CF 0.9 0.6
CF NE CO HO 180.9 180.1
CO NE CF CT' 188.5 179.3
CF NE CT' OS' 242.6 203.6
CF NE CT' CP' 130.5 88.1
CF NE CT' HT' 5.7 325.8
CK CM NN CF 178.8 179.8
NN CM CF NE 1.2 0.1
CM NN CO NE 359.9 359.5
CM NN CO HO 179.9 180.0
CF NE CO NN 0.9 0.6
NE CO NN HO 180.0 179.5
NN CO NE CT' 189.3 179.9
CF NE CO CT' 171.6 180.7
NN CO NE HO 180.0 180.5
CO NE CT' OS' 52.7 24.4
CO NE CT' CP' 300.5 268.9
CO NE CT' HT' 175.7 146.6
NN CO HO NE 180.0 179.4
HO CO NE CT' 9.3 359.4
CF NE CT' CO 189.9 179.2
CT' NE CO HO 9.3 359.4
OS' CT' NE CP' 112.1 115.5
OS' CT' NE HT' 236.9 237.8
NE CT' OS' C4' 193.2 200.6
CP' CT' NE HT' 124.8 122.3
NE CT' CP' C3' 159.3 142.9
NE CT' CP' HP'1 277.9 261.5
NE CT' CP' HP'2 40.8 24.2
NE CT' OS' CP' 240.6 241.1
NE CT' OS' HT' 122.6 122.1
CP' CT' OS' HT' 242.1 241.0
OS' CT' CP' C3' 43.5 24.0
OS' CT' CP' HP'1 162.0 142.6
OS' CT' CP' HP'2 284.9 265.3
CT' OS' C4' C5' 155.8 159.3
CT' OS' C4' C3' 31.8 40.4
CT' OS' C4' H4' 275.0 281.6
NE CT' CP' OS' 115.8 118.9
NE CT' CP' HT' 234.8 237.8
OS' CT' CP' HT' 119.0 118.9
CP' CT' OS' C4' 312.6 319.6
C3' CP' CT' HP'1 241.4 241.3
C3' CP' CT' HP'2 118.5 118.7
CT' CP' C3' C4' 336.2 360.0
CT' CP' C3' O3' 91.0 118.7
CT' CP' C3' H3' 216.9 241.4
HP'1 CP' CT' HP'2 237.1 237.3
NE CT' HT' OS' 239.1 237.8
NE CT' HT' CP' 126.3 122.3
OS' CT' HT' CP' 247.2 244.5
HT' CT' OS' C4' 70.5 78.5
HT' CT' CP' C3' 284.5 265.1
HT' CT' CP' HP'1 43.1 23.7
HT' CT' CP' HP'2 166.0 146.4
O5' C5' C4' OS' 304.2 66.5
C4' OS' CT' CP' 312.6 319.6
C4' OS' CT' HT' 70.5 78.5
CP' C3' C4' OS' 356.5 336.1
OS' C4' C5' H5'1 184.2 306.4
OS' C4' C5' H5'2 64.2 186.4
C5' C4' OS' C3' 124.0 118.9
C5' C4' OS' H4' 240.8 237.8
C3' C4' OS' H4' 116.8 118.9
OS' C4' C3' O3' 238.8 217.4
OS' C4' C3' H3' 115.8 94.6
C3' CP' CT' HT' 284.5 265.1
CT' CP' C3' HP'1 118.6 118.7
CT' CP' C3' HP'2 241.5 241.4
OS' C4' C3' CP' 356.5 336.1
HP'1 CP' C3' HP'2 122.9 122.7
C5' C4' C3' CP' 234.7 217.2
CP' C3' C4' H4' 114.1 94.9
C4' C3' CP' O3' 245.2 241.3
C4' C3' CP' H3' 119.3 118.6
O3' C3' CP' H3' 234.2 237.3
CP' C3' O3' HA 180.0 61.5
HP'1 CP' CT' HT' 43.1 23.7
CT' CP' HP'1 C3' 248.2 245.3
CT' CP' HP'1 HP'2 124.1 122.6
C3' CP' HP'1 HP'2 235.9 237.3
HP'1 CP' C3' C4' 217.6 241.3
HP'1 CP' C3' O3' 332.5 0.0
HP'1 CP' C3' H3' 98.3 122.7
HP'2 CP' CT' HT' 166.0 146.4
CT' CP' HP'2 C3' 111.8 114.6
CT' CP' HP'2 HP'1 235.9 237.3
C3' CP' HP'2 HP'1 124.1 122.7
HP'2 CP' C3' C4' 94.7 118.6
HP'2 CP' C3' O3' 209.6 237.3
HP'2 CP' C3' H3' 335.4 0.0
O5' C5' C4' H5'1 120.0 120.1
O5' C5' C4' H5'2 240.0 240.0
OS' C4' C5' C3' 240.5 244.6
OS' C4' C5' H4' 119.9 122.2
CP' C3' C4' C5' 234.7 217.2
H5'1 C5' C4' H5'2 120.0 120.0
C3' C4' C5' H4' 239.4 237.6
C5' C4' C3' O3' 116.9 98.6
C5' C4' C3' H3' 354.0 335.8
O5' C5' H5'1 C4' 240.1 239.9
O5' C5' H5'1 H5'2 120.1 119.9
C4' C5' H5'1 H5'2 240.0 240.0
H5'1 C5' C4' C3' 303.7 61.8
H5'1 C5' C4' H4' 64.3 184.2
O5' C5' H5'2 C4' 119.9 120.0
O5' C5' H5'2 H5'1 240.0 240.0
C4' C5' H5'2 H5'1 120.0 120.0
H5'2 C5' C4' C3' 183.6 301.8
H5'2 C5' C4' H4' 304.2 64.2
OS' C4' C3' C5' 121.8 118.9
OS' C4' C3' H4' 242.4 241.2
C4' C3' CP' HP'1 217.6 241.3
C4' C3' CP' HP'2 94.7 118.6
CP' C3' C4' O3' 117.8 118.6
CP' C3' C4' H3' 240.7 241.4
C3' C4' C5' H5'1 303.7 61.8
C3' C4' C5' H5'2 183.6 301.8
C5' C4' C3' H4' 120.6 122.3
O3' C3' C4' H3' 123.0 122.8
C4' C3' O3' HA 293.0 176.1
OS' C4' H4' C5' 239.5 237.8
OS' C4' H4' C3' 115.4 115.4
H4' C4' C5' H5'1 64.3 184.2
H4' C4' C5' H5'2 304.2 64.2
C5' C4' H4' C3' 236.0 237.6
H4' C4' C3' O3' 356.3 336.2
H4' C4' C3' H3' 233.4 213.5
O3' C3' CP' HP'1 332.5 0.0
O3' C3' CP' HP'2 209.6 237.3
CP' C3' O3' C4' 247.0 245.4
CP' C3' O3' H3' 125.0 122.6
O3' C3' C4' H4' 356.3 336.2
C4' C3' O3' H3' 238.0 237.3
H3' C3' CP' HP'1 98.3 122.7
H3' C3' CP' HP'2 335.4 0.0
CP' C3' H3' C4' 115.1 114.6
CP' C3' H3' O3' 234.9 237.3
H3' C3' C4' H4' 233.4 213.5
C4' C3' H3' O3' 119.8 122.7
H3' C3' O3' HA 55.0 298.8
HA O3' C3' H3' 55.0 298.8