PDB Chemical Component BZD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BZD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O5	C1	1.459	1.425
O5	C5	1.469	1.426
C1	C2	1.540	1.530
C1	N1	1.436	1.465
C1	H1	1.115	1.090
C2	O2	1.442	1.429
C2	C3	1.557	1.532
C2	H2	1.115	1.090
O2	HO2	0.950	0.967
C3	O3	1.433	1.428
C3	C4	1.571	1.533
C3	H3	1.114	1.090
O3	HO3	0.949	0.967
C4	O4	1.441	1.429
C4	C5	1.598	1.530
C4	H4	1.115	1.090
O4	HO4	0.950	0.967
C5	C6	1.563	1.531
C5	H5	1.115	1.089
C6	O6	1.437	1.429
C6	H61	1.114	1.090
C6	H62	1.115	1.090
O6	HO6	0.950	0.967
N1	C7	1.359	1.347
N1	HN1	1.021	0.970
C7	O7	1.248	1.216
C7	N2	1.388	1.347
N2	C8	1.381	1.347
N2	HN2	1.019	0.971
C8	O8	1.224	1.215
C8	C9	1.520	1.477
C9	C10	1.458	1.396
C9	C14	1.450	1.395
C10	C11	1.430	1.379
C10	H101	1.103	1.080
C11	C12	1.441	1.383
C11	H111	1.104	1.079
C12	C13	1.448	1.383
C12	H121	1.103	1.080
C13	C14	1.440	1.379
C13	H131	1.103	1.079
C14	H141	1.102	1.080

Bond Angles for BZD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	O5	C5	112.1	107.6
O5	C1	C2	113.3	109.8
O5	C1	N1	110.7	109.4
O5	C1	H1	105.5	109.4
O5	C5	C4	109.8	109.8
O5	C5	C6	108.1	109.4
O5	C5	H5	111.0	109.4
C2	C1	N1	108.0	109.4
C2	C1	H1	108.3	109.4
C1	C2	O2	110.2	109.5
C1	C2	C3	108.9	109.0
C1	C2	H2	110.1	109.5
N1	C1	H1	111.0	109.4
C1	N1	C7	122.0	120.1
C1	N1	HN1	107.8	119.9
O2	C2	C3	111.6	109.7
O2	C2	H2	107.3	109.5
C2	O2	HO2	110.2	106.8
C3	C2	H2	108.7	109.5
C2	C3	O3	109.2	109.6
C2	C3	C4	108.1	108.6
C2	C3	H3	111.6	109.6
O3	C3	C4	112.3	109.8
O3	C3	H3	107.3	109.6
C3	O3	HO3	109.2	106.8
C4	C3	H3	108.4	109.6
C3	C4	O4	108.9	109.5
C3	C4	C5	108.2	109.0
C3	C4	H4	111.5	109.5
O4	C4	C5	111.9	109.6
O4	C4	H4	107.8	109.6
C4	O4	HO4	108.9	106.9
C5	C4	H4	108.5	109.7
C4	C5	C6	112.0	109.4
C4	C5	H5	107.1	109.4
C6	C5	H5	108.8	109.4
C5	C6	O6	109.8	109.5
C5	C6	H61	112.1	109.5
C5	C6	H62	112.1	109.4
O6	C6	H61	112.0	109.4
O6	C6	H62	112.0	109.5
C6	O6	HO6	109.8	106.8
H61	C6	H62	98.4	109.5
C7	N1	HN1	107.7	120.0
N1	C7	O7	117.7	120.0
N1	C7	N2	121.6	120.1
O7	C7	N2	120.7	120.0
C7	N2	C8	126.5	120.1
C7	N2	HN2	117.0	120.0
C8	N2	HN2	116.4	119.9
N2	C8	O8	122.5	119.9
N2	C8	C9	122.1	120.1
O8	C8	C9	115.4	120.0
C8	C9	C10	121.3	120.1
C8	C9	C14	119.7	120.2
C10	C9	C14	119.0	119.7
C9	C10	C11	120.9	119.9
C9	C10	H101	120.6	120.1
C9	C14	C13	119.9	119.9
C9	C14	H141	120.4	120.0
C11	C10	H101	118.6	120.0
C10	C11	C12	119.8	120.1
C10	C11	H111	119.7	120.0
C12	C11	H111	120.5	119.9
C11	C12	C13	120.0	120.3
C11	C12	H121	119.7	119.8
C13	C12	H121	120.3	119.9
C12	C13	C14	120.3	120.1
C12	C13	H131	120.1	119.9
C14	C13	H131	119.6	119.9
C13	C14	H141	119.7	120.1

Torsion Angles for BZD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	O5	C5	C4	58.4	67.7
C1	O5	C5	C6	180.8	187.7
C1	O5	C5	H5	300.1	307.6
C2	C1	O5	N1	121.5	120.1
C2	C1	O5	H1	241.7	239.9
O5	C1	C2	O2	180.2	181.2
O5	C1	C2	C3	57.5	61.2
O5	C1	C2	H2	298.4	301.4
N1	C1	O5	H1	120.2	119.8
O5	C1	N1	C7	256.9	270.0
O5	C1	N1	HN1	131.7	90.1
C5	O5	C1	C2	301.5	292.4
C5	O5	C1	N1	180.0	172.3
C5	O5	C1	H1	59.8	52.5
C3	C4	C5	O5	300.6	298.7
O4	C4	C5	O5	180.6	178.8
O5	C5	C4	H4	61.8	58.5
C4	C5	O5	C6	237.6	240.0
C4	C5	O5	H5	118.3	120.1
C6	C5	O5	H5	240.7	240.1
O5	C5	C6	O6	306.9	59.8
O5	C5	C6	H61	72.1	299.9
O5	C5	C6	H62	181.7	179.9
C2	C1	O5	C5	301.5	292.4
O5	C1	C2	N1	237.0	239.9
O5	C1	C2	H1	116.7	120.1
N1	C1	C2	H1	239.7	240.2
C2	C1	N1	C7	132.3	149.7
C2	C1	N1	HN1	7.1	329.7
O2	C2	C1	C3	122.6	120.0
O2	C2	C1	H2	241.8	239.8
C1	C2	O2	HO2	179.9	60.0
C3	C2	C1	H2	119.1	119.8
C1	C2	C3	O3	179.8	186.4
C1	C2	C3	C4	302.2	306.3
C1	C2	C3	H3	61.3	66.0
N1	C1	O5	C5	180.0	172.3
O5	C1	N1	C2	124.6	120.3
O5	C1	N1	H1	243.2	240.2
C2	C1	N1	H1	118.6	119.8
N1	C1	C2	O2	303.2	301.3
N1	C1	C2	C3	180.6	181.3
N1	C1	C2	H2	61.4	61.5
C7	N1	C1	HN1	125.2	180.0
C1	N1	C7	O7	358.7	359.9
C1	N1	C7	N2	181.1	180.1
H1	C1	O5	C5	59.8	52.5
O5	C1	H1	C2	238.4	239.7
O5	C1	H1	N1	120.0	119.8
C2	C1	H1	N1	241.6	240.2
H1	C1	C2	O2	63.5	61.1
H1	C1	C2	C3	300.9	301.1
H1	C1	C2	H2	181.8	181.3
H1	C1	N1	C7	13.7	29.8
H1	C1	N1	HN1	248.5	209.9
O2	C2	C1	N1	303.2	301.3
O2	C2	C1	H1	63.5	61.1
C1	C2	O2	C3	239.0	240.4
C1	C2	O2	H2	119.9	120.2
C3	C2	O2	H2	241.0	239.8
O2	C2	C3	O3	58.0	66.4
O2	C2	C3	C4	180.4	186.4
O2	C2	C3	H3	299.5	306.1
C3	C2	C1	N1	180.6	181.3
C3	C2	C1	H1	300.9	301.1
C1	C2	C3	O2	121.8	119.9
C1	C2	C3	H2	240.0	240.2
O2	C2	C3	H2	118.2	120.2
C3	C2	O2	HO2	301.0	179.6
O3	C3	C2	C4	237.6	240.1
O3	C3	C2	H3	118.4	120.4
C2	C3	O3	HO3	180.0	300.0
C4	C3	C2	H3	240.9	240.3
C2	C3	C4	O4	181.1	173.7
C2	C3	C4	C5	59.2	53.8
C2	C3	C4	H4	299.9	293.8
H2	C2	C1	N1	61.4	61.5
H2	C2	C1	H1	181.8	181.3
C1	C2	H2	O2	240.0	239.9
C1	C2	H2	C3	119.2	119.5
O2	C2	H2	C3	239.2	239.7
H2	C2	O2	HO2	60.0	299.8
H2	C2	C3	O3	299.8	306.2
H2	C2	C3	C4	62.2	66.1
H2	C2	C3	H3	181.4	185.9
HO2	O2	C2	C3	301.0	179.6
HO2	O2	C2	H2	60.0	299.8
O3	C3	C2	H2	299.8	306.2
C2	C3	O3	C4	119.9	119.3
C2	C3	O3	H3	238.9	239.7
C4	C3	O3	H3	119.0	120.4
O3	C3	C4	O4	301.6	293.5
O3	C3	C4	C5	179.7	173.6
O3	C3	C4	H4	60.5	53.7
O5	C5	C4	C3	300.6	298.7
C4	C3	C2	H2	62.2	66.1
C2	C3	C4	O3	239.5	240.1
C2	C3	C4	H3	121.1	119.7
O3	C3	C4	H3	241.6	239.5
C4	C3	O3	HO3	60.1	180.8
O4	C4	C3	C5	121.9	119.9
O4	C4	C3	H4	241.2	239.8
C3	C4	O4	HO4	180.0	60.0
C5	C4	C3	H4	119.3	119.9
C3	C4	C5	C6	180.5	178.6
C3	C4	C5	H5	61.2	58.8
H3	C3	C2	H2	181.4	185.9
C2	C3	H3	O3	119.5	120.4
C2	C3	H3	C4	241.1	240.9
O3	C3	H3	C4	121.5	120.5
H3	C3	O3	HO3	301.0	60.4
H3	C3	C4	O4	60.0	54.0
H3	C3	C4	C5	298.1	294.1
H3	C3	C4	H4	178.8	174.1
HO3	O3	C3	C4	60.1	180.8
HO3	O3	C3	H3	301.0	60.4
O5	C5	C4	O4	180.6	178.8
O4	C4	C3	H3	60.0	54.0
C3	C4	O4	C5	240.4	240.5
C3	C4	O4	H4	121.1	120.1
C5	C4	O4	H4	240.7	239.6
O4	C4	C5	C6	60.5	58.7
O4	C4	C5	H5	301.2	298.9
O5	C5	C4	C6	120.1	120.1
O5	C5	C4	H5	239.4	239.9
C5	C4	C3	H3	298.1	294.1
C3	C4	C5	O4	120.0	119.9
C3	C4	C5	H4	238.8	240.2
O4	C4	C5	H4	118.8	120.3
C5	C4	O4	HO4	299.6	179.5
C6	C5	C4	H5	119.2	119.8
C4	C5	C6	O6	68.0	180.1
C4	C5	C6	H61	193.2	60.2
C4	C5	C6	H62	302.8	300.2
H4	C4	C3	H3	178.8	174.1
C3	C4	H4	O4	240.5	239.9
C3	C4	H4	C5	119.1	119.5
O4	C4	H4	C5	238.6	239.6
H4	C4	O4	HO4	58.8	299.9
H4	C4	C5	C6	301.6	298.4
H4	C4	C5	H5	182.4	178.6
HO4	O4	C4	C5	299.6	179.5
HO4	O4	C4	H4	58.8	299.9
O5	C5	C6	C4	238.9	239.7
O5	C5	C6	H5	120.7	119.9
C6	C5	C4	H4	301.6	298.4
C4	C5	C6	H5	241.8	240.2
O6	C6	C5	H61	234.8	119.9
O6	C6	C5	H62	125.2	240.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	250.4	120.0
O5	C5	H5	C4	119.9	120.3
O5	C5	H5	C6	241.1	240.1
H5	C5	C4	H4	182.4	178.6
C4	C5	H5	C6	121.2	119.8
H5	C5	C6	O6	186.2	300.0
H5	C5	C6	H61	311.4	180.0
H5	C5	C6	H62	61.0	60.0
O6	C6	C5	H5	186.2	300.0
C5	C6	O6	H61	125.2	240.0
C5	C6	O6	H62	234.8	120.0
H61	C6	O6	H62	109.5	239.9
H61	C6	C5	H5	311.4	180.0
C5	C6	H61	O6	236.0	120.0
C5	C6	H61	H62	118.0	240.0
O6	C6	H61	H62	242.0	120.1
H61	C6	O6	HO6	54.8	300.0
H62	C6	C5	H5	61.0	60.0
C5	C6	H62	O6	124.0	240.0
C5	C6	H62	H61	242.0	120.0
O6	C6	H62	H61	118.0	240.0
H62	C6	O6	HO6	305.2	60.0
HO6	O6	C6	H61	54.8	300.0
HO6	O6	C6	H62	305.2	60.0
C7	N1	C1	H1	13.7	29.8
C1	N1	C7	HN1	234.7	180.0
O7	C7	N1	N2	177.6	179.9
N1	C7	N2	C8	358.2	180.0
N1	C7	N2	HN2	178.2	360.0
HN1	N1	C1	H1	248.5	209.9
C1	N1	HN1	C7	133.3	180.0
HN1	N1	C7	O7	124.0	179.9
HN1	N1	C7	N2	306.4	0.0
O7	C7	N1	HN1	124.0	179.9
N1	C7	O7	N2	182.3	180.1
O7	C7	N2	C8	180.7	0.1
O7	C7	N2	HN2	0.7	180.1
N2	C7	N1	HN1	306.4	0.0
N1	C7	N2	O7	177.6	179.9
C8	N2	C7	HN2	180.0	180.0
C7	N2	C8	O8	1.3	360.0
C7	N2	C8	C9	180.4	180.0
C7	N2	C8	HN2	180.0	180.0
O8	C8	N2	C9	180.9	180.0
N2	C8	C9	C10	180.5	180.0
N2	C8	C9	C14	1.1	359.7
C7	N2	HN2	C8	180.0	180.0
HN2	N2	C8	O8	181.3	180.0
HN2	N2	C8	C9	0.4	360.0
O8	C8	N2	HN2	181.3	180.0
N2	C8	O8	C9	179.2	180.0
O8	C8	C9	C10	359.7	360.0
O8	C8	C9	C14	180.3	179.7
C9	C8	N2	HN2	0.4	360.0
N2	C8	C9	O8	180.8	180.0
C10	C9	C8	C14	179.4	180.3
C8	C9	C10	C11	179.6	180.0
C8	C9	C10	H101	359.6	360.0
C8	C9	C14	C13	180.4	179.7
C8	C9	C14	H141	0.4	0.3
C8	C9	C10	C14	180.6	179.7
C10	C9	C14	C13	1.0	359.4
C10	C9	C14	H141	181.0	180.0
C11	C10	C9	H101	180.0	180.0
C9	C10	C11	C12	1.1	0.0
C9	C10	C11	H111	181.2	180.0
C8	C9	C14	C10	179.4	180.3
C14	C9	C10	C11	359.0	0.3
C14	C9	C10	H101	179.0	180.3
C12	C13	C14	C9	358.7	0.6
C9	C14	C13	H131	178.7	180.3
C13	C14	C9	H141	180.0	179.4
C11	C10	C9	C14	359.0	0.3
C9	C10	C11	H101	180.0	180.0
C12	C11	C10	H111	180.0	180.0
C10	C11	C12	C13	358.6	0.0
C10	C11	C12	H121	178.6	180.0
H101	C10	C9	C14	179.0	180.3
C9	C10	H101	C11	180.0	180.0
H101	C10	C11	C12	181.2	180.0
H101	C10	C11	H111	1.2	360.0
C12	C11	C10	H101	181.2	180.0
C10	C11	C12	H111	180.0	180.0
C13	C12	C11	H121	180.0	180.0
C11	C12	C13	C14	1.5	359.7
C11	C12	C13	H131	181.5	180.0
H111	C11	C10	H101	1.2	360.0
C10	C11	H111	C12	180.0	180.0
H111	C11	C12	C13	178.6	180.1
H111	C11	C12	H121	358.6	0.0
C9	C14	C13	C12	358.7	0.6
C13	C12	C11	H111	178.6	180.1
C11	C12	C13	H121	180.0	180.0
C14	C13	C12	H131	180.0	179.7
C12	C13	C14	H141	178.7	180.0
H121	C12	C11	H111	358.6	0.0
C11	C12	H121	C13	180.0	180.0
H121	C12	C13	C14	181.4	179.7
H121	C12	C13	H131	1.5	360.0
C9	C14	C13	H141	180.0	180.6
C14	C13	C12	H121	181.4	179.7
C12	C13	C14	H131	180.0	180.3
H131	C13	C12	H121	1.5	360.0
C12	C13	H131	C14	180.0	179.7
H131	C13	C14	H141	358.7	359.7
C9	C14	H141	C13	180.0	179.4
H141	C14	C13	H131	358.7	359.7