Atom Nomenclature for BZ9

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for BZ9

Atom Name (V3) Atom Name (V2)
N1 N1
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C10 C10
C13 C13
C15 C15
C17 C17
C20 C20
C21 C21
C22 C22
C24 C24
C26 C26
C28 C28
C35 C35
N34 N34
C32 C32
N27 N27
N31 N31
C30 C30
C29 C29
C23 C23
N25 N25
O33 O33
C18 C18
C36 C36
C19 C19
C14 C14
C12 C12
C11 C11
N16 N16
C9 C9
N2 N2
C3 C3
H5 H5
H6 H6
H7 H7
H8 H8
H13 H13
H15 H15
H22 H22
H24 H24
H35 H35
H35A H35A
H30 H30
H29 H29
H23 H23
H36 H36
H36A H36A
H36B H36B
H19 H19
H14 H14
H12 H12
HN16 HN16
HN1 HN1
H221 H221
H231 H231