Atom Nomenclature for BZ1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for BZ1

Atom Name (V3) Atom Name (V2)
C3 C3
C9 C9
C10 C10
C11 C11
C12 C12
S1 S1
C4 C4
C5 C5
C6 C6
S2 S2
N2 N2
O3 O3
O4 O4
C7 C7
C8 C8
S3 S3
O2 O2
O5 O5
N3 N3
N1 N1
C2 C2
O1 O1
C1 C1
H31 H31
H32 H32
H11 H11
H121 H121
H122 H122
H41 H41
H42 H42
H51 H51
H52 H52
H53 H53
H61 H61
H62 H62
HN21 HN21
HN22 HN22
H8 H8
HN1 HN1
H21 H21
H22 H22
H11A H11A
H12 H12
H13 H13