PDB Chemical Component BYM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BYM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
N2 |
1.414 |
1.323 |
| C1 |
C5 |
1.471 |
1.476 |
| C1 |
O7 |
1.231 |
1.217 |
| C3 |
N2 |
1.412 |
1.348 |
| C3 |
S4 |
1.766 |
1.786 |
| C3 |
O6 |
1.230 |
1.217 |
| C8 |
C9 |
1.332 |
1.396 |
| C8 |
C11 |
1.472 |
1.380 |
| C8 |
O10 |
1.374 |
1.367 |
| C9 |
C13 |
1.470 |
1.389 |
| C9 |
O12 |
1.367 |
1.365 |
| C11 |
C15 |
1.378 |
1.400 |
| C11 |
H11 |
1.102 |
1.080 |
| C13 |
C16 |
1.353 |
1.378 |
| C13 |
H13 |
1.104 |
1.080 |
| C14 |
O10 |
1.459 |
1.440 |
| C14 |
O12 |
1.451 |
1.439 |
| C14 |
F17 |
1.385 |
1.399 |
| C14 |
F19 |
1.375 |
1.399 |
| C15 |
C16 |
1.511 |
1.400 |
| C15 |
C18 |
1.502 |
1.468 |
| C16 |
H16 |
1.104 |
1.080 |
| N2 |
HN2 |
1.020 |
0.970 |
| S4 |
C5 |
1.775 |
1.787 |
| C5 |
C18 |
1.357 |
1.357 |
| C18 |
H18 |
1.104 |
1.080 |
Bond Angles for BYM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C1 |
C5 |
113.7 |
116.6 |
| N2 |
C1 |
O7 |
122.3 |
121.7 |
| C1 |
N2 |
C3 |
112.2 |
121.5 |
| C1 |
N2 |
HN2 |
123.9 |
119.3 |
| C5 |
C1 |
O7 |
124.0 |
121.7 |
| C1 |
C5 |
S4 |
109.5 |
100.8 |
| C1 |
C5 |
C18 |
122.4 |
129.6 |
| N2 |
C3 |
S4 |
113.0 |
103.2 |
| N2 |
C3 |
O6 |
122.8 |
128.4 |
| C3 |
N2 |
HN2 |
123.9 |
119.3 |
| S4 |
C3 |
O6 |
124.2 |
128.4 |
| C3 |
S4 |
C5 |
91.6 |
97.9 |
| C9 |
C8 |
C11 |
121.4 |
120.0 |
| C9 |
C8 |
O10 |
112.3 |
108.6 |
| C8 |
C9 |
C13 |
121.7 |
120.1 |
| C8 |
C9 |
O12 |
112.6 |
108.6 |
| C11 |
C8 |
O10 |
126.3 |
131.4 |
| C8 |
C11 |
C15 |
118.7 |
119.9 |
| C8 |
C11 |
H11 |
123.8 |
120.0 |
| C8 |
O10 |
C14 |
99.8 |
105.4 |
| C13 |
C9 |
O12 |
125.7 |
131.3 |
| C9 |
C13 |
C16 |
118.4 |
120.3 |
| C9 |
C13 |
H13 |
124.8 |
119.9 |
| C9 |
O12 |
C14 |
100.3 |
105.5 |
| C15 |
C11 |
H11 |
117.4 |
120.1 |
| C11 |
C15 |
C16 |
118.8 |
119.8 |
| C11 |
C15 |
C18 |
123.8 |
120.1 |
| C16 |
C13 |
H13 |
116.8 |
119.8 |
| C13 |
C16 |
C15 |
121.0 |
119.9 |
| C13 |
C16 |
H16 |
114.0 |
120.0 |
| O10 |
C14 |
O12 |
109.7 |
103.9 |
| O10 |
C14 |
F17 |
108.5 |
110.6 |
| O10 |
C14 |
F19 |
111.2 |
110.5 |
| O12 |
C14 |
F17 |
110.8 |
110.6 |
| O12 |
C14 |
F19 |
107.8 |
110.6 |
| F17 |
C14 |
F19 |
108.9 |
110.5 |
| C16 |
C15 |
C18 |
117.4 |
120.1 |
| C15 |
C16 |
H16 |
125.0 |
120.0 |
| C15 |
C18 |
C5 |
128.3 |
120.0 |
| C15 |
C18 |
H18 |
121.8 |
120.0 |
| S4 |
C5 |
C18 |
128.2 |
129.6 |
| C5 |
C18 |
H18 |
109.9 |
120.0 |
Torsion Angles for BYM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C1 |
N2 |
O7 |
179.9 |
180.6 |
| N2 |
C1 |
C5 |
S4 |
0.3 |
359.6 |
| N2 |
C1 |
C5 |
C18 |
180.3 |
179.8 |
| C1 |
N2 |
C3 |
S4 |
359.7 |
359.6 |
| C1 |
N2 |
C3 |
O6 |
179.5 |
179.7 |
| C3 |
N2 |
C1 |
HN2 |
180.0 |
180.3 |
| N2 |
C1 |
C5 |
O7 |
180.1 |
179.4 |
| C5 |
C1 |
N2 |
C3 |
360.0 |
0.6 |
| C5 |
C1 |
N2 |
HN2 |
180.0 |
180.2 |
| C3 |
S4 |
C5 |
C1 |
359.6 |
0.2 |
| C15 |
C18 |
C5 |
C1 |
191.5 |
172.1 |
| S4 |
C5 |
C1 |
C18 |
180.0 |
179.8 |
| C1 |
C5 |
C18 |
H18 |
11.5 |
352.2 |
| N2 |
C1 |
O7 |
C5 |
179.9 |
180.6 |
| O7 |
C1 |
N2 |
C3 |
180.1 |
180.0 |
| O7 |
C1 |
N2 |
HN2 |
0.1 |
359.7 |
| O7 |
C1 |
C5 |
S4 |
180.2 |
180.1 |
| O7 |
C1 |
C5 |
C18 |
0.3 |
0.4 |
| C3 |
N2 |
C1 |
C5 |
360.0 |
0.6 |
| C3 |
N2 |
C1 |
O7 |
180.1 |
180.0 |
| C1 |
N2 |
C3 |
HN2 |
180.0 |
179.7 |
| S4 |
C3 |
N2 |
O6 |
180.2 |
179.9 |
| N2 |
C3 |
S4 |
C5 |
0.4 |
0.0 |
| C1 |
C5 |
S4 |
C3 |
359.6 |
0.2 |
| N2 |
C3 |
S4 |
O6 |
179.8 |
180.1 |
| S4 |
C3 |
N2 |
HN2 |
179.7 |
180.0 |
| C3 |
S4 |
C5 |
C18 |
179.6 |
180.0 |
| N2 |
C3 |
O6 |
S4 |
180.2 |
179.9 |
| O6 |
C3 |
N2 |
HN2 |
359.5 |
0.1 |
| O6 |
C3 |
S4 |
C5 |
180.6 |
180.0 |
| C11 |
C8 |
C9 |
O10 |
179.7 |
179.9 |
| C9 |
C8 |
C11 |
C15 |
0.3 |
0.0 |
| C9 |
C8 |
C11 |
H11 |
180.3 |
180.0 |
| C9 |
C8 |
O10 |
C14 |
345.9 |
17.1 |
| C13 |
C9 |
C8 |
O12 |
179.6 |
180.0 |
| C8 |
C9 |
C13 |
C16 |
0.1 |
360.0 |
| C8 |
C9 |
C13 |
H13 |
180.1 |
180.0 |
| C8 |
C9 |
O12 |
C14 |
13.2 |
342.6 |
| C9 |
C8 |
C11 |
O10 |
180.3 |
180.2 |
| C11 |
C8 |
C9 |
C13 |
359.9 |
360.0 |
| C11 |
C8 |
C9 |
O12 |
180.3 |
180.0 |
| C11 |
C8 |
O10 |
C14 |
166.2 |
197.3 |
| C15 |
C11 |
C8 |
H11 |
180.0 |
180.0 |
| C8 |
C11 |
C15 |
C16 |
359.6 |
0.0 |
| C8 |
C11 |
C15 |
C18 |
179.7 |
180.0 |
| C9 |
C8 |
O10 |
C11 |
179.7 |
179.8 |
| O10 |
C8 |
C9 |
C13 |
180.2 |
180.1 |
| O10 |
C8 |
C9 |
O12 |
0.6 |
0.2 |
| O10 |
C8 |
C11 |
C15 |
180.0 |
179.8 |
| O10 |
C8 |
C11 |
H11 |
360.0 |
359.8 |
| C8 |
O10 |
C14 |
O12 |
22.4 |
332.9 |
| C8 |
O10 |
C14 |
F17 |
261.3 |
91.6 |
| C8 |
O10 |
C14 |
F19 |
141.5 |
214.3 |
| C13 |
C9 |
C8 |
C11 |
359.9 |
360.0 |
| C13 |
C9 |
C8 |
O10 |
180.2 |
180.1 |
| C8 |
C9 |
C13 |
O12 |
180.5 |
180.0 |
| C13 |
C9 |
O12 |
C14 |
193.7 |
162.6 |
| C16 |
C13 |
C9 |
H13 |
180.0 |
180.0 |
| C9 |
C13 |
C16 |
C15 |
359.8 |
0.0 |
| C9 |
C13 |
C16 |
H16 |
179.8 |
180.0 |
| O12 |
C9 |
C8 |
C11 |
180.3 |
180.0 |
| O12 |
C9 |
C8 |
O10 |
0.6 |
0.2 |
| C8 |
C9 |
O12 |
C13 |
179.5 |
180.0 |
| O12 |
C9 |
C13 |
C16 |
179.6 |
180.0 |
| O12 |
C9 |
C13 |
H13 |
359.6 |
359.9 |
| O10 |
C14 |
O12 |
C9 |
337.9 |
27.2 |
| C9 |
O12 |
C14 |
F17 |
97.6 |
268.5 |
| C9 |
O12 |
C14 |
F19 |
216.7 |
145.8 |
| C15 |
C11 |
C8 |
O10 |
180.0 |
179.8 |
| C8 |
C11 |
C15 |
H11 |
180.0 |
180.0 |
| C13 |
C16 |
C15 |
C11 |
0.4 |
360.0 |
| C16 |
C15 |
C11 |
C18 |
179.9 |
180.0 |
| C11 |
C15 |
C16 |
H16 |
180.4 |
180.0 |
| C11 |
C15 |
C18 |
C5 |
329.1 |
163.6 |
| C11 |
C15 |
C18 |
H18 |
149.1 |
343.5 |
| H11 |
C11 |
C8 |
O10 |
360.0 |
359.8 |
| C8 |
C11 |
H11 |
C15 |
180.0 |
180.0 |
| H11 |
C11 |
C15 |
C16 |
179.6 |
180.0 |
| H11 |
C11 |
C15 |
C18 |
359.7 |
0.0 |
| C16 |
C13 |
C9 |
O12 |
179.6 |
180.0 |
| C9 |
C13 |
C16 |
H13 |
180.0 |
180.0 |
| C11 |
C15 |
C16 |
C13 |
0.4 |
360.0 |
| C13 |
C16 |
C15 |
C18 |
180.3 |
180.0 |
| C15 |
C16 |
C13 |
H16 |
180.0 |
180.0 |
| H13 |
C13 |
C9 |
O12 |
359.6 |
359.9 |
| C9 |
C13 |
H13 |
C16 |
180.0 |
180.0 |
| H13 |
C13 |
C16 |
C15 |
179.8 |
180.0 |
| H13 |
C13 |
C16 |
H16 |
359.8 |
0.0 |
| C9 |
O12 |
C14 |
O10 |
337.9 |
27.2 |
| O12 |
C14 |
O10 |
F17 |
121.1 |
241.3 |
| O12 |
C14 |
O10 |
F19 |
240.9 |
118.7 |
| F17 |
C14 |
O10 |
F19 |
119.7 |
237.4 |
| O10 |
C14 |
O12 |
F17 |
240.2 |
118.7 |
| O10 |
C14 |
O12 |
F19 |
121.2 |
241.4 |
| F17 |
C14 |
O12 |
F19 |
240.9 |
122.7 |
| O10 |
C14 |
F17 |
O12 |
120.5 |
245.4 |
| O10 |
C14 |
F17 |
F19 |
238.9 |
122.7 |
| O12 |
C14 |
F17 |
F19 |
118.4 |
237.2 |
| O10 |
C14 |
F19 |
O12 |
239.7 |
114.5 |
| O10 |
C14 |
F19 |
F17 |
119.5 |
237.3 |
| O12 |
C14 |
F19 |
F17 |
239.8 |
122.8 |
| C16 |
C15 |
C11 |
H11 |
179.6 |
180.0 |
| C11 |
C15 |
C16 |
C18 |
180.1 |
180.0 |
| C15 |
C16 |
C13 |
H13 |
179.8 |
180.0 |
| C13 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
| C16 |
C15 |
C18 |
C5 |
149.2 |
343.6 |
| C16 |
C15 |
C18 |
H18 |
329.2 |
163.6 |
| C1 |
C5 |
C18 |
C15 |
191.5 |
172.1 |
| C18 |
C15 |
C11 |
H11 |
359.7 |
0.0 |
| C11 |
C15 |
C18 |
C16 |
179.9 |
180.0 |
| C18 |
C15 |
C16 |
H16 |
0.3 |
0.0 |
| S4 |
C5 |
C18 |
C15 |
11.5 |
352.4 |
| C5 |
C18 |
C15 |
H18 |
180.0 |
180.1 |
| H16 |
C16 |
C13 |
H13 |
359.8 |
0.0 |
| C13 |
C16 |
H16 |
C15 |
180.0 |
180.0 |
| H16 |
C16 |
C15 |
C18 |
0.3 |
0.0 |
| HN2 |
N2 |
C1 |
C5 |
180.0 |
180.2 |
| HN2 |
N2 |
C1 |
O7 |
0.1 |
359.7 |
| C1 |
N2 |
HN2 |
C3 |
180.0 |
180.3 |
| HN2 |
N2 |
C3 |
S4 |
179.7 |
180.0 |
| HN2 |
N2 |
C3 |
O6 |
359.5 |
0.1 |
| S4 |
C5 |
C1 |
O7 |
180.2 |
180.1 |
| C1 |
C5 |
S4 |
C18 |
180.0 |
180.2 |
| C5 |
S4 |
C3 |
O6 |
180.6 |
180.0 |
| C15 |
C18 |
C5 |
S4 |
11.5 |
352.4 |
| S4 |
C5 |
C18 |
H18 |
191.5 |
172.4 |
| C18 |
C5 |
C1 |
O7 |
0.3 |
0.4 |
| C1 |
C5 |
C18 |
S4 |
180.0 |
179.7 |
| C15 |
C18 |
C5 |
H18 |
180.0 |
179.9 |
| C15 |
C18 |
H18 |
C5 |
180.0 |
180.1 |