PDB Chemical Component BY7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BY7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C07 |
C04 |
1.518 |
1.508 |
| C04 |
C03 |
1.390 |
1.383 |
| C04 |
C05 |
1.385 |
1.388 |
| C03 |
C02 |
1.403 |
1.391 |
| C05 |
C06 |
1.398 |
1.380 |
| C02 |
N02 |
1.358 |
1.390 |
| C02 |
N01 |
1.350 |
1.325 |
| C06 |
N01 |
1.351 |
1.319 |
| C06 |
C08 |
1.517 |
1.508 |
| C09 |
C08 |
1.530 |
1.529 |
| C09 |
C11 |
1.514 |
1.508 |
| C16 |
C11 |
1.390 |
1.381 |
| C16 |
C15 |
1.390 |
1.383 |
| C11 |
C12 |
1.404 |
1.383 |
| C21 |
C15 |
1.512 |
1.507 |
| C21 |
C22 |
1.525 |
1.530 |
| C15 |
C14 |
1.397 |
1.381 |
| C25 |
N24 |
1.469 |
1.469 |
| C22 |
C23 |
1.526 |
1.530 |
| C12 |
C13 |
1.402 |
1.382 |
| C23 |
N24 |
1.472 |
1.469 |
| N24 |
C26 |
1.469 |
1.469 |
| C14 |
C13 |
1.399 |
1.383 |
| C13 |
C17 |
1.526 |
1.507 |
| F19 |
C17 |
1.321 |
1.399 |
| C17 |
F20 |
1.326 |
1.399 |
| C17 |
F18 |
1.322 |
1.398 |
| C14 |
H1 |
1.080 |
1.080 |
| C21 |
H2 |
1.100 |
1.090 |
| C21 |
H3 |
1.100 |
1.091 |
| C22 |
H4 |
1.100 |
1.090 |
| C22 |
H5 |
1.100 |
1.090 |
| C23 |
H6 |
1.100 |
1.090 |
| C23 |
H7 |
1.100 |
1.089 |
| C26 |
H9 |
1.100 |
1.090 |
| C26 |
H10 |
1.100 |
1.090 |
| C26 |
H11 |
1.100 |
1.090 |
| C25 |
H12 |
1.100 |
1.091 |
| C25 |
H13 |
1.100 |
1.090 |
| C25 |
H14 |
1.100 |
1.090 |
| C12 |
H15 |
1.080 |
1.080 |
| C16 |
H16 |
1.080 |
1.081 |
| C09 |
H17 |
1.100 |
1.089 |
| C09 |
H18 |
1.100 |
1.090 |
| C08 |
H19 |
1.100 |
1.090 |
| C08 |
H20 |
1.100 |
1.090 |
| N02 |
H21 |
1.000 |
0.970 |
| N02 |
H22 |
1.000 |
0.970 |
| C03 |
H23 |
1.080 |
1.081 |
| C05 |
H24 |
1.080 |
1.081 |
| C07 |
H25 |
1.100 |
1.090 |
| C07 |
H26 |
1.100 |
1.090 |
| C07 |
H27 |
1.100 |
1.090 |
Bond Angles for BY7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C04 |
C03 |
H23 |
120.3 |
120.5 |
| C04 |
C05 |
H24 |
120.0 |
120.3 |
| C02 |
N02 |
H21 |
109.5 |
120.0 |
| C02 |
N02 |
H22 |
109.5 |
120.0 |
| C06 |
C08 |
H19 |
110.3 |
109.5 |
| C06 |
C08 |
H20 |
110.3 |
109.4 |
| C08 |
C09 |
H17 |
108.4 |
109.5 |
| C08 |
C09 |
H18 |
108.4 |
109.5 |
| C09 |
C08 |
H19 |
110.3 |
109.5 |
| C09 |
C08 |
H20 |
110.3 |
109.5 |
| C11 |
C12 |
H15 |
119.5 |
119.9 |
| C21 |
C22 |
C23 |
110.7 |
109.4 |
| C22 |
C21 |
H2 |
109.5 |
109.5 |
| C22 |
C21 |
H3 |
109.5 |
109.5 |
| C21 |
C22 |
H4 |
109.2 |
109.5 |
| C21 |
C22 |
H5 |
109.1 |
109.4 |
| C15 |
C14 |
H1 |
119.4 |
120.0 |
| C22 |
C23 |
N24 |
110.5 |
109.4 |
| C23 |
C22 |
H4 |
109.2 |
109.5 |
| C23 |
C22 |
H5 |
109.2 |
109.5 |
| C22 |
C23 |
H6 |
109.2 |
109.5 |
| C22 |
C23 |
H7 |
109.2 |
109.5 |
| C23 |
N24 |
C26 |
109.4 |
111.0 |
| N24 |
C23 |
H6 |
109.2 |
109.5 |
| N24 |
C23 |
H7 |
109.2 |
109.5 |
| N24 |
C26 |
H9 |
109.5 |
109.5 |
| N24 |
C26 |
H10 |
109.4 |
109.5 |
| N24 |
C26 |
H11 |
109.4 |
109.5 |
| H2 |
C21 |
H3 |
109.5 |
109.5 |
| H4 |
C22 |
H5 |
109.5 |
109.5 |
| H6 |
C23 |
H7 |
109.5 |
109.5 |
| H9 |
C26 |
H10 |
109.5 |
109.5 |
| H9 |
C26 |
H11 |
109.5 |
109.5 |
| H10 |
C26 |
H11 |
109.5 |
109.5 |
| H12 |
C25 |
H13 |
109.5 |
109.5 |
| H12 |
C25 |
H14 |
109.5 |
109.4 |
| H13 |
C25 |
H14 |
109.5 |
109.5 |
| H17 |
C09 |
H18 |
109.5 |
109.5 |
| H19 |
C08 |
H20 |
109.5 |
109.4 |
| H21 |
N02 |
H22 |
109.5 |
120.0 |
| H25 |
C07 |
H26 |
109.5 |
109.5 |
| H25 |
C07 |
H27 |
109.4 |
109.5 |
| H26 |
C07 |
H27 |
109.5 |
109.5 |
Torsion Angles for BY7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C07 |
C04 |
C03 |
H23 |
0.6 |
0.1 |
| C07 |
C04 |
C05 |
H24 |
359.7 |
359.8 |
| C05 |
C04 |
C03 |
H23 |
180.2 |
179.8 |
| C03 |
C02 |
N02 |
H21 |
180.5 |
180.1 |
| C03 |
C02 |
N02 |
H22 |
300.6 |
0.1 |
| C05 |
C06 |
C08 |
H19 |
217.9 |
4.6 |
| C05 |
C06 |
C08 |
H20 |
339.0 |
244.7 |
| H21 |
N02 |
C02 |
H22 |
239.9 |
179.9 |
| N01 |
C06 |
C08 |
H19 |
39.8 |
185.0 |
| N01 |
C06 |
C08 |
H20 |
160.9 |
65.1 |
| C06 |
C08 |
C09 |
H17 |
280.1 |
60.0 |
| C06 |
C08 |
C09 |
H18 |
38.9 |
299.9 |
| C09 |
C08 |
C06 |
H19 |
240.5 |
120.0 |
| C09 |
C08 |
C06 |
H20 |
119.4 |
240.0 |
| H19 |
C08 |
C06 |
H20 |
238.9 |
119.9 |
| C06 |
C08 |
C09 |
H19 |
119.5 |
240.0 |
| C06 |
C08 |
C09 |
H20 |
240.6 |
120.0 |
| H17 |
C09 |
C08 |
H18 |
241.2 |
120.1 |
| H19 |
C08 |
C09 |
H20 |
121.1 |
240.0 |
| C09 |
C11 |
C12 |
H15 |
0.1 |
0.1 |
| C16 |
C11 |
C12 |
H15 |
179.2 |
180.0 |
| C16 |
C15 |
C14 |
H1 |
180.4 |
180.0 |
| C21 |
C15 |
C14 |
H1 |
0.3 |
0.1 |
| C21 |
C22 |
C23 |
N24 |
168.3 |
180.0 |
| C23 |
C22 |
C21 |
H4 |
239.8 |
240.0 |
| C23 |
C22 |
C21 |
H5 |
120.2 |
120.0 |
| C21 |
C22 |
C23 |
H6 |
288.4 |
300.0 |
| C21 |
C22 |
C23 |
H7 |
48.1 |
60.0 |
| H2 |
C21 |
C22 |
H3 |
120.1 |
120.0 |
| H4 |
C22 |
C21 |
H5 |
240.4 |
240.0 |
| C25 |
N24 |
C23 |
H6 |
5.2 |
70.0 |
| C25 |
N24 |
C23 |
H7 |
245.5 |
310.0 |
| C25 |
N24 |
C26 |
H9 |
180.0 |
296.0 |
| C25 |
N24 |
C26 |
H10 |
300.0 |
56.0 |
| C25 |
N24 |
C26 |
H11 |
60.0 |
176.0 |
| C23 |
C22 |
C21 |
H2 |
74.1 |
60.0 |
| C23 |
C22 |
C21 |
H3 |
314.0 |
300.0 |
| C21 |
C22 |
C23 |
H4 |
120.2 |
120.0 |
| C21 |
C22 |
C23 |
H5 |
239.8 |
240.1 |
| C22 |
C23 |
N24 |
C26 |
244.7 |
66.1 |
| N24 |
C23 |
C22 |
H6 |
239.9 |
240.0 |
| N24 |
C23 |
C22 |
H7 |
120.1 |
120.0 |
| H4 |
C22 |
C23 |
H5 |
119.6 |
120.1 |
| H6 |
C23 |
C22 |
H7 |
240.3 |
240.0 |
| N24 |
C23 |
C22 |
H4 |
48.1 |
60.0 |
| N24 |
C23 |
C22 |
H5 |
288.4 |
300.0 |
| C22 |
C23 |
N24 |
H6 |
120.2 |
120.0 |
| C22 |
C23 |
N24 |
H7 |
239.9 |
240.0 |
| C23 |
N24 |
C26 |
H9 |
60.7 |
60.0 |
| C23 |
N24 |
C26 |
H10 |
180.7 |
180.0 |
| C23 |
N24 |
C26 |
H11 |
300.8 |
300.0 |
| H6 |
C23 |
N24 |
H7 |
119.7 |
120.0 |
| C26 |
N24 |
C23 |
H6 |
124.6 |
306.1 |
| C26 |
N24 |
C23 |
H7 |
4.8 |
186.0 |
| H9 |
C26 |
N24 |
H10 |
240.0 |
240.0 |
| H9 |
C26 |
N24 |
H11 |
120.0 |
120.0 |
| H10 |
C26 |
N24 |
H11 |
240.0 |
240.0 |
| H2 |
C21 |
C22 |
C23 |
74.1 |
60.0 |
| C22 |
C21 |
H2 |
H3 |
239.9 |
239.9 |
| H2 |
C21 |
C22 |
H4 |
194.3 |
180.0 |
| H2 |
C21 |
C22 |
H5 |
313.9 |
300.0 |
| H3 |
C21 |
C22 |
C23 |
314.0 |
300.0 |
| C22 |
C21 |
H3 |
H2 |
120.1 |
120.0 |
| H3 |
C21 |
C22 |
H4 |
74.2 |
60.0 |
| H3 |
C21 |
C22 |
H5 |
193.8 |
180.0 |
| C21 |
C22 |
H4 |
C23 |
238.8 |
240.0 |
| H4 |
C22 |
C21 |
H2 |
194.3 |
180.0 |
| H4 |
C22 |
C21 |
H3 |
74.2 |
60.0 |
| C21 |
C22 |
H4 |
H5 |
119.4 |
120.0 |
| H4 |
C22 |
C23 |
N24 |
48.1 |
60.0 |
| C23 |
C22 |
H4 |
H5 |
240.6 |
240.0 |
| H4 |
C22 |
C23 |
H6 |
168.2 |
180.0 |
| H4 |
C22 |
C23 |
H7 |
287.9 |
300.0 |
| C21 |
C22 |
H5 |
C23 |
121.2 |
119.9 |
| H5 |
C22 |
C21 |
H2 |
313.9 |
300.0 |
| H5 |
C22 |
C21 |
H3 |
193.8 |
180.0 |
| C21 |
C22 |
H5 |
H4 |
240.6 |
240.0 |
| H5 |
C22 |
C23 |
N24 |
288.4 |
300.0 |
| C23 |
C22 |
H5 |
H4 |
119.4 |
120.0 |
| H5 |
C22 |
C23 |
H6 |
48.6 |
59.9 |
| H5 |
C22 |
C23 |
H7 |
168.3 |
180.0 |
| C22 |
C23 |
H6 |
N24 |
239.1 |
240.0 |
| H6 |
C23 |
C22 |
H4 |
168.2 |
180.0 |
| H6 |
C23 |
C22 |
H5 |
48.6 |
59.9 |
| C22 |
C23 |
H6 |
H7 |
119.5 |
120.0 |
| H6 |
C23 |
N24 |
C26 |
124.6 |
306.1 |
| N24 |
C23 |
H6 |
H7 |
240.5 |
240.0 |
| C22 |
C23 |
H7 |
N24 |
120.9 |
119.9 |
| H7 |
C23 |
C22 |
H4 |
287.9 |
300.0 |
| H7 |
C23 |
C22 |
H5 |
168.3 |
180.0 |
| C22 |
C23 |
H7 |
H6 |
240.4 |
240.0 |
| H7 |
C23 |
N24 |
C26 |
4.8 |
186.0 |
| N24 |
C23 |
H7 |
H6 |
119.5 |
120.0 |
| N24 |
C26 |
H9 |
H10 |
120.0 |
120.0 |
| N24 |
C26 |
H9 |
H11 |
240.0 |
240.0 |
| H10 |
C26 |
H9 |
H11 |
120.0 |
120.0 |
| N24 |
C26 |
H10 |
H9 |
240.0 |
240.0 |
| N24 |
C26 |
H10 |
H11 |
120.0 |
120.0 |
| H9 |
C26 |
H10 |
H11 |
240.0 |
240.0 |
| N24 |
C26 |
H11 |
H9 |
120.0 |
120.0 |
| N24 |
C26 |
H11 |
H10 |
240.0 |
240.0 |
| H9 |
C26 |
H11 |
H10 |
120.0 |
120.0 |
| H13 |
C25 |
H12 |
H14 |
120.0 |
120.0 |
| H12 |
C25 |
H13 |
H14 |
240.0 |
240.0 |
| H12 |
C25 |
H14 |
H13 |
120.0 |
120.0 |
| C08 |
C09 |
H17 |
H18 |
118.1 |
239.9 |
| H17 |
C09 |
C08 |
H19 |
160.6 |
180.0 |
| H17 |
C09 |
C08 |
H20 |
39.5 |
300.0 |
| C08 |
C09 |
H18 |
H17 |
241.9 |
120.1 |
| H18 |
C09 |
C08 |
H19 |
279.4 |
59.9 |
| H18 |
C09 |
C08 |
H20 |
158.3 |
180.0 |
| C06 |
C08 |
H19 |
H20 |
121.6 |
240.1 |
| H19 |
C08 |
C09 |
H17 |
160.6 |
180.0 |
| H19 |
C08 |
C09 |
H18 |
279.4 |
59.9 |
| C09 |
C08 |
H19 |
H20 |
238.4 |
120.1 |
| C06 |
C08 |
H20 |
H19 |
238.4 |
119.9 |
| H20 |
C08 |
C09 |
H17 |
39.5 |
300.0 |
| H20 |
C08 |
C09 |
H18 |
158.3 |
180.0 |
| C09 |
C08 |
H20 |
H19 |
121.6 |
239.9 |
| C02 |
N02 |
H21 |
H22 |
120.0 |
180.1 |
| C02 |
N02 |
H22 |
H21 |
239.9 |
179.9 |
| H26 |
C07 |
H25 |
H27 |
120.0 |
120.0 |
| H25 |
C07 |
H26 |
H27 |
240.0 |
240.0 |
| H25 |
C07 |
H27 |
H26 |
120.0 |
120.0 |