PDB Chemical Component BXD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BXD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O32 S28 1.455 1.421
C25 S28 1.797 1.817
C25 C23 1.561 1.530
S28 O33 1.448 1.421
S28 C29 1.792 1.816
O71 C68 1.446 1.429
O71 C72 1.449 1.429
C75 C72 1.552 1.530
C36 N34 1.492 1.469
C36 C39 1.539 1.507
C47 C39 1.418 1.382
C47 C45 1.414 1.383
C68 C5 1.558 1.530
N34 C23 1.492 1.470
F4 C2 1.361 1.399
C29 C19 1.565 1.531
C39 C40 1.415 1.382
C23 C21 1.563 1.526
C45 C43 1.416 1.382
C5 C2 1.548 1.530
C5 O7 1.444 1.430
C2 F1 1.357 1.399
C2 F3 1.358 1.399
C21 C19 1.562 1.526
C21 O62 1.438 1.429
C19 C16 1.567 1.531
C40 C42 1.427 1.382
C43 C42 1.426 1.382
O7 C8 1.399 1.360
C42 C49 1.571 1.507
C14 C8 1.417 1.386
C14 C13 1.414 1.383
C16 C13 1.538 1.507
C8 C9 1.414 1.392
C13 C11 1.419 1.382
C9 N65 1.357 1.402
C9 C10 1.415 1.388
C11 C10 1.416 1.385
C50 C49 1.557 1.530
C49 C54 1.565 1.529
C49 C58 1.566 1.531
C10 F64 1.328 1.351
C5 H1 1.100 1.090
C11 H2 1.080 1.079
C14 H3 1.080 1.080
C16 H4 1.100 1.090
C16 H5 1.100 1.090
C19 H6 1.100 1.090
C21 H7 1.100 1.090
C23 H8 1.100 1.090
C25 H9 1.100 1.090
C25 H10 1.099 1.089
C29 H11 1.100 1.090
C29 H12 1.100 1.090
N34 H13 1.000 1.009
C36 H15 1.100 1.090
C36 H16 1.100 1.089
C40 H17 1.080 1.080
C43 H18 1.080 1.080
C45 H19 1.080 1.080
C47 H20 1.080 1.080
C50 H21 1.100 1.090
C50 H22 1.100 1.089
C50 H23 1.100 1.091
C54 H24 1.100 1.090
C54 H25 1.100 1.090
C54 H26 1.100 1.090
C58 H27 1.100 1.090
C58 H28 1.100 1.090
C58 H29 1.101 1.090
O62 H30 0.950 0.967
N65 H31 1.000 0.970
N65 H32 1.000 0.970
C68 H33 1.100 1.090
C68 H34 1.100 1.090
C72 H35 1.100 1.090
C72 H36 1.100 1.090
C75 H37 1.100 1.090
C75 H38 1.100 1.090
C75 H39 1.100 1.089

Bond Angles for BXD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O32 S28 O33 118.1 119.3
C25 S28 O33 109.8 108.7
C25 S28 C29 100.4 101.3
S28 C25 H9 109.1 109.6
S28 C25 H10 109.1 109.6
C25 C23 H8 105.6 109.4
C29 S28 O33 110.3 108.8
S28 C29 H11 109.7 109.5
S28 C29 H12 109.6 109.6
O71 C68 H33 109.2 109.5
O71 C68 H34 109.2 109.5
O71 C72 H35 109.5 109.5
O71 C72 H36 109.5 109.4
C75 C72 H35 109.4 109.5
C75 C72 H36 109.5 109.5
C36 N34 H13 106.4 111.1
C36 C39 C40 118.8 120.1
C39 C36 H15 109.2 109.4
C39 C36 H16 109.1 109.5
C47 C45 H19 120.0 120.0
C68 C5 H1 109.6 109.5
N34 C23 H8 106.4 109.4
C29 C19 H6 106.7 109.4
C39 C40 C42 122.6 120.0
C39 C40 H17 118.7 120.0
C23 C21 O62 104.7 109.2
C23 C21 H7 108.8 109.2
C45 C43 H18 119.0 120.0
C5 O7 C8 121.2 117.0
O7 C5 H1 111.2 109.5
C21 C19 H6 106.7 109.4
O62 C21 H7 110.4 109.2
C21 O62 H30 109.5 114.0
C19 C16 H4 108.7 109.5
C19 C16 H5 108.6 109.4
C40 C42 C49 120.8 120.0
C42 C40 H17 118.7 120.0
C43 C42 C49 122.8 120.0
O7 C8 C9 117.9 120.1
C42 C49 C54 115.0 109.5
C42 C49 C58 111.0 109.4
C8 C9 N65 119.6 120.1
C8 C9 C10 119.7 119.8
C13 C11 H2 120.1 119.9
C10 C9 N65 120.7 120.1
C9 N65 H31 109.5 120.0
C9 N65 H32 109.5 120.0
C9 C10 F64 119.4 120.1
C11 C10 F64 120.1 120.0
C50 C49 C54 107.2 109.5
C50 C49 C58 109.0 109.4
C54 C49 C58 105.4 109.5
C49 C54 H24 109.5 109.5
C49 C54 H25 109.5 109.4
C49 C54 H26 109.5 109.5
C49 C58 H27 109.5 109.5
C49 C58 H28 109.5 109.5
C49 C58 H29 109.5 109.5
H4 C16 H5 109.5 109.5
H9 C25 H10 109.5 109.6
H11 C29 H12 109.5 109.7
H15 C36 H16 109.5 109.5
H21 C50 H22 109.5 109.5
H21 C50 H23 109.4 109.4
H22 C50 H23 109.5 109.5
H24 C54 H25 109.5 109.4
H24 C54 H26 109.4 109.5
H25 C54 H26 109.5 109.4
H27 C58 H28 109.5 109.4
H27 C58 H29 109.5 109.5
H28 C58 H29 109.5 109.4
H31 N65 H32 109.4 120.0
H33 C68 H34 109.5 109.5
H35 C72 H36 109.4 109.5
H37 C75 H38 109.5 109.5
H37 C75 H39 109.5 109.5
H38 C75 H39 109.4 109.5

Torsion Angles for BXD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C25 S28 O32 O33 234.9 234.8
O32 S28 C25 H9 311.0 71.4
O32 S28 C25 H10 70.6 311.2
C29 S28 O32 O33 126.8 125.4
O32 S28 C29 H11 294.8 48.8
O32 S28 C29 H12 55.0 288.5
O32 S28 C25 O33 129.9 131.2
S28 C25 C23 H8 299.5 303.5
C29 S28 C25 O33 243.8 245.6
C25 S28 C29 H11 181.7 294.5
C25 S28 C29 H12 301.9 174.1
H9 C25 S28 H10 240.4 120.3
N34 C23 C25 H8 244.9 240.2
C25 C23 C21 O62 183.0 169.7
C25 C23 C21 H7 64.9 50.3
C25 S28 O33 C29 250.2 250.6
O33 S28 C25 H9 181.1 300.2
O33 S28 C25 H10 300.7 180.0
O33 S28 C29 H11 65.9 180.1
O33 S28 C29 H12 186.1 59.8
O32 S28 C29 O33 228.9 228.7
C25 S28 C29 O33 115.8 114.3
C29 S28 C25 H9 64.9 185.8
C29 S28 C25 H10 184.5 65.6
S28 C29 C19 H6 48.2 56.3
H11 C29 S28 H12 239.8 120.4
O71 C68 C5 H1 320.7 175.0
H33 C68 O71 H34 240.3 120.1
C72 O71 C68 H33 19.6 60.0
C72 O71 C68 H34 139.3 300.0
C75 C72 O71 H35 240.0 240.0
C75 C72 O71 H36 120.0 120.0
H35 C72 O71 H36 240.1 240.0
O71 C72 C75 H35 120.0 120.0
O71 C72 C75 H36 240.0 240.1
H35 C72 C75 H36 119.9 120.0
C36 N34 C23 H8 308.2 324.8
C39 C36 N34 H13 176.9 304.0
C36 C39 C40 C42 180.4 180.0
C36 C39 C40 H17 0.3 0.0
H15 C36 C39 H16 119.6 120.0
C47 C39 C36 H15 128.1 149.8
C47 C39 C36 H16 8.4 29.8
C47 C39 C40 H17 180.1 180.3
C47 C45 C43 H18 180.1 179.8
O7 C5 C68 H1 122.7 120.0
C25 C23 N34 H8 114.6 119.8
N34 C23 C21 O62 54.4 49.6
N34 C23 C21 H7 296.3 290.3
C21 C19 C29 H6 244.6 239.9
C29 C19 C16 H4 66.9 175.2
C29 C19 C16 H5 185.9 55.2
C40 C39 C36 H15 307.8 330.0
C40 C39 C36 H16 188.2 210.0
C39 C40 C42 C49 179.8 180.0
C42 C40 C39 H17 180.0 180.0
C23 C21 C19 H6 305.7 309.9
O62 C21 C23 H7 118.1 119.4
C23 C21 O62 H30 180.0 301.2
C45 C43 C42 C49 180.2 180.0
C68 C5 O7 H1 238.3 240.0
C5 O7 C8 C9 142.9 185.3
C29 C19 C21 H6 115.4 120.1
C21 C19 C16 H4 300.9 54.8
C21 C19 C16 H5 60.0 294.8
C23 C21 O62 H7 243.0 240.6
O62 C21 C19 H6 63.0 70.2
H4 C16 C19 H5 240.9 120.0
C39 C40 C42 H17 180.0 180.0
C43 C42 C40 C49 180.2 180.0
C40 C42 C49 C54 171.7 60.0
C40 C42 C49 C58 291.3 180.0
C40 C42 C43 C49 179.8 180.0
C43 C42 C40 H17 180.0 180.0
C43 C42 C49 C54 351.5 240.0
C43 C42 C49 C58 111.1 360.0
C8 O7 C5 H1 359.6 325.6
O7 C8 C9 N65 0.3 360.0
O7 C8 C9 C10 180.4 180.0
C49 C42 C40 H17 359.8 360.0
C50 C49 C42 C54 239.6 239.9
C50 C49 C42 C58 120.0 120.0
C54 C49 C42 C58 240.4 240.0
C42 C49 C54 H24 180.0 60.0
C42 C49 C54 H25 300.0 180.0
C42 C49 C54 H26 60.0 299.9
C42 C49 C58 H27 180.0 60.0
C42 C49 C58 H28 300.0 180.0
C42 C49 C58 H29 60.0 300.0
C14 C8 C9 N65 180.2 180.2
C14 C13 C11 H2 179.8 179.8
C16 C13 C11 H2 359.1 359.9
C10 C9 C8 N65 180.1 180.1
C8 C9 N65 H31 180.0 0.0
C8 C9 N65 H32 300.0 180.0
C8 C9 C10 F64 179.5 179.9
C13 C11 C10 F64 180.5 180.0
C8 C9 N65 C10 180.1 180.1
N65 C9 C10 F64 359.6 360.0
H31 N65 C9 H32 240.0 180.0
C8 C9 C10 N65 179.9 179.9
C10 C9 N65 H31 359.9 180.0
C10 C9 N65 H32 119.9 360.0
C11 C10 C9 F64 180.3 180.1
C11 C10 C9 N65 179.8 180.1
C9 C10 C11 F64 179.7 179.9
C42 C49 C50 C54 125.1 120.0
C42 C49 C50 C58 238.7 240.0
C54 C49 C50 C58 113.6 120.0
C50 C49 C54 H24 301.4 180.1
C50 C49 C54 H25 61.4 300.1
C50 C49 C54 H26 181.4 60.0
C50 C49 C58 H27 59.9 300.0
C50 C49 C58 H28 180.0 60.0
C50 C49 C58 H29 299.9 180.0
C42 C49 C54 C58 122.6 120.0
C50 C49 C54 C58 244.0 240.0
C54 C49 C58 H27 305.2 180.0
C54 C49 C58 H28 65.2 300.0
C54 C49 C58 H29 185.2 59.9
H24 C54 C49 H25 240.0 240.0
H24 C54 C49 H26 120.0 120.1
H25 C54 C49 H26 240.0 240.1
C42 C49 C58 C54 234.8 240.0
C50 C49 C58 C54 114.8 120.0
C58 C49 C54 H24 57.4 300.1
C58 C49 C54 H25 177.4 60.0
C58 C49 C54 H26 297.4 180.0
H27 C58 C49 H28 240.0 240.1
H27 C58 C49 H29 120.0 120.1
H28 C58 C49 H29 240.0 240.0
F64 C10 C9 N65 359.6 360.0
H1 C5 O7 C8 359.6 325.6
H2 C11 C10 F64 0.5 0.0
C19 C16 H4 H5 118.5 240.0
C19 C16 H5 H4 241.4 120.0
H6 C19 C16 H4 183.1 295.0
H6 C19 C16 H5 302.1 175.0
C23 C21 H7 O62 114.4 119.4
H7 C21 C19 H6 185.0 189.6
H7 C21 O62 H30 297.0 60.6
H8 C23 C21 O62 298.9 289.8
H8 C23 C21 H7 180.8 170.5
H9 C25 S28 O33 181.1 300.2
H9 C25 S28 C29 64.9 185.8
S28 C25 H9 H10 119.4 239.8
H9 C25 C23 H8 179.3 63.3
H10 C25 S28 O33 300.7 180.0
H10 C25 S28 C29 184.5 65.6
S28 C25 H10 H9 240.6 120.2
H10 C25 C23 H8 59.7 183.6
H11 C29 S28 O33 65.9 180.1
S28 C29 H11 H12 120.3 239.7
H11 C29 C19 H6 288.3 176.2
H12 C29 S28 O33 186.1 59.8
S28 C29 H12 H11 239.7 120.3
H12 C29 C19 H6 168.1 296.5
H13 N34 C23 H8 186.5 200.8
H15 C36 N34 H13 297.1 63.9
H15 C36 C39 C40 307.8 330.0
C39 C36 H15 H16 240.6 239.9
H16 C36 N34 H13 56.7 183.9
H16 C36 C39 C40 188.2 210.0
C39 C36 H16 H15 119.4 120.0
C39 C40 H17 C42 180.0 180.0
H17 C40 C42 C49 359.8 360.0
H18 C43 C42 C49 0.2 0.0
H19 C45 C43 H18 0.1 359.9
H20 C47 C45 H19 0.0 0.1
H21 C50 C49 C54 54.9 300.0
H21 C50 C49 C58 301.3 180.0
H22 C50 H21 H23 120.0 120.0
H22 C50 C49 C54 174.9 60.0
H22 C50 C49 C58 61.3 300.0
H21 C50 H22 H23 240.0 240.0
H23 C50 C49 C54 294.9 180.0
H23 C50 C49 C58 181.3 60.0
H21 C50 H23 H22 120.0 120.0
H24 C54 C49 C58 57.4 300.1
C49 C54 H24 H25 120.0 120.0
C49 C54 H24 H26 240.0 239.9
H25 C54 H24 H26 120.0 120.0
H25 C54 C49 C58 177.4 60.0
C49 C54 H25 H24 239.9 240.0
C49 C54 H25 H26 120.0 120.0
H24 C54 H25 H26 240.0 240.0
H26 C54 C49 C58 297.4 180.0
C49 C54 H26 H24 120.0 120.1
C49 C54 H26 H25 240.0 240.1
H24 C54 H26 H25 120.0 120.0
C49 C58 H27 H28 120.0 119.9
C49 C58 H27 H29 240.0 239.9
H28 C58 H27 H29 120.0 120.0
C49 C58 H28 H27 240.0 240.1
C49 C58 H28 H29 120.0 120.0
H27 C58 H28 H29 240.0 240.0
C49 C58 H29 H27 120.0 120.0
C49 C58 H29 H28 240.0 240.0
H27 C58 H29 H28 120.0 120.0
H30 O62 C21 H7 297.0 60.6
C9 N65 H31 H32 120.0 180.0
C9 N65 H32 H31 240.0 180.0
O71 C68 H33 H34 119.5 240.0
H33 C68 C5 H1 200.6 295.0
O71 C68 H34 H33 240.5 120.0
H34 C68 C5 H1 80.8 55.0
O71 C72 H35 H36 120.0 119.9
C75 C72 H35 H36 240.1 240.0
O71 C72 H36 H35 240.0 240.0
C75 C72 H36 H35 119.9 120.0
H37 C75 C72 H35 60.0 180.0
H37 C75 C72 H36 300.1 60.0
H38 C75 H37 H39 120.0 120.0
H38 C75 C72 H35 180.0 300.0
H38 C75 C72 H36 60.1 180.0
H37 C75 H38 H39 240.0 240.0
H39 C75 C72 H35 300.0 60.0
H39 C75 C72 H36 180.0 300.0
H37 C75 H39 H38 120.0 120.0