PDB Chemical Component BX2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BX2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.522 |
1.530 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| C3 |
N1 |
1.354 |
1.319 |
| N1 |
C7 |
1.355 |
1.319 |
| C11 |
O1 |
1.224 |
1.213 |
| C2 |
C3 |
1.508 |
1.507 |
| C2 |
H2 |
1.100 |
1.089 |
| C2 |
H2A |
1.101 |
1.090 |
| C12 |
N2 |
1.347 |
1.373 |
| N2 |
C13 |
1.442 |
1.465 |
| N2 |
C11 |
1.362 |
1.350 |
| C4 |
C3 |
1.391 |
1.381 |
| N3 |
C12 |
1.294 |
1.297 |
| N3 |
C10 |
1.512 |
1.473 |
| C4 |
C5 |
1.400 |
1.387 |
| C4 |
H4 |
1.080 |
1.081 |
| N4 |
C12 |
1.347 |
1.374 |
| N4 |
HN4 |
1.000 |
0.971 |
| N4 |
HN4A |
1.000 |
0.970 |
| C10 |
C5 |
1.539 |
1.506 |
| C5 |
C6 |
1.402 |
1.387 |
| N5 |
C21 |
1.353 |
1.322 |
| N5 |
C22 |
1.339 |
1.318 |
| C6 |
C7 |
1.394 |
1.382 |
| C6 |
H6 |
1.080 |
1.079 |
| C22 |
N6 |
1.339 |
1.318 |
| N6 |
C23 |
1.354 |
1.322 |
| C7 |
C8 |
1.507 |
1.507 |
| C8 |
C9 |
1.521 |
1.530 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.101 |
1.090 |
| C9 |
H9B |
1.100 |
1.090 |
| C14 |
C10 |
1.534 |
1.507 |
| C10 |
C11 |
1.550 |
1.516 |
| C13 |
H13 |
1.100 |
1.091 |
| C13 |
H13A |
1.100 |
1.090 |
| C13 |
H13B |
1.100 |
1.090 |
| C19 |
C14 |
1.408 |
1.379 |
| C14 |
C15 |
1.400 |
1.384 |
| C16 |
C15 |
1.395 |
1.383 |
| C15 |
H15 |
1.080 |
1.080 |
| C17 |
C16 |
1.394 |
1.380 |
| C16 |
H16 |
1.080 |
1.080 |
| C18 |
C17 |
1.398 |
1.393 |
| C17 |
H17 |
1.080 |
1.080 |
| C20 |
C18 |
1.464 |
1.484 |
| C18 |
C19 |
1.404 |
1.394 |
| C19 |
H19 |
1.080 |
1.079 |
| C21 |
C20 |
1.382 |
1.396 |
| C20 |
C23 |
1.385 |
1.397 |
| C21 |
H21 |
1.080 |
1.080 |
| C22 |
H22 |
1.080 |
1.080 |
| C23 |
H23 |
1.080 |
1.080 |
Bond Angles for BX2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| H1 |
C1 |
H1A |
109.4 |
109.5 |
| H1 |
C1 |
H1B |
109.5 |
109.4 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| C3 |
N1 |
C7 |
117.7 |
121.7 |
| N1 |
C7 |
C6 |
122.8 |
120.8 |
| N1 |
C7 |
C8 |
117.1 |
119.6 |
| C3 |
C2 |
H2 |
108.4 |
109.5 |
| C3 |
C2 |
H2A |
108.4 |
109.5 |
| H2 |
C2 |
H2A |
110.6 |
109.5 |
| C12 |
N2 |
C13 |
127.7 |
124.7 |
| C11 |
N2 |
C13 |
123.5 |
124.7 |
| N2 |
C13 |
H13 |
109.5 |
109.5 |
| N2 |
C13 |
H13A |
109.5 |
109.5 |
| N2 |
C13 |
H13B |
109.5 |
109.5 |
| N2 |
C11 |
C10 |
106.7 |
105.1 |
| C10 |
N3 |
C12 |
106.5 |
107.5 |
| N3 |
C12 |
N4 |
121.6 |
123.6 |
| N3 |
C10 |
C5 |
111.1 |
110.5 |
| N3 |
C10 |
C11 |
101.2 |
103.9 |
| C5 |
C4 |
H4 |
119.9 |
120.4 |
| C4 |
C5 |
C6 |
117.2 |
118.4 |
| C12 |
N4 |
HN4 |
120.0 |
120.0 |
| C12 |
N4 |
HN4A |
120.0 |
120.0 |
| HN4 |
N4 |
HN4A |
120.0 |
120.0 |
| C5 |
C6 |
C7 |
119.7 |
119.2 |
| C5 |
C6 |
H6 |
120.2 |
120.4 |
| C21 |
N5 |
C22 |
115.9 |
120.9 |
| N5 |
C21 |
C20 |
124.8 |
119.0 |
| N5 |
C21 |
H21 |
117.6 |
120.5 |
| N5 |
C22 |
N6 |
125.4 |
122.0 |
| N5 |
C22 |
H22 |
117.3 |
118.9 |
| C7 |
C6 |
H6 |
120.1 |
120.4 |
| C6 |
C7 |
C8 |
120.2 |
119.6 |
| C22 |
N6 |
C23 |
115.8 |
120.9 |
| N6 |
C23 |
C20 |
124.8 |
119.0 |
| N6 |
C23 |
H23 |
117.6 |
120.5 |
| C7 |
C8 |
C9 |
112.0 |
109.4 |
| C7 |
C8 |
H8 |
108.6 |
109.5 |
| C7 |
C8 |
H8A |
108.6 |
109.4 |
| C9 |
C8 |
H8 |
108.6 |
109.5 |
| C9 |
C8 |
H8A |
108.6 |
109.5 |
| C8 |
C9 |
H9 |
109.5 |
109.5 |
| C8 |
C9 |
H9A |
109.5 |
109.5 |
| C8 |
C9 |
H9B |
109.5 |
109.5 |
| H8 |
C8 |
H8A |
110.3 |
109.5 |
| H9 |
C9 |
H9A |
109.5 |
109.4 |
| H9 |
C9 |
H9B |
109.4 |
109.5 |
| H9A |
C9 |
H9B |
109.5 |
109.5 |
| H13 |
C13 |
H13A |
109.5 |
109.4 |
| H13 |
C13 |
H13B |
109.5 |
109.4 |
| H13A |
C13 |
H13B |
109.5 |
109.5 |
| C14 |
C15 |
H15 |
119.9 |
119.9 |
| C16 |
C15 |
H15 |
119.9 |
119.9 |
| C17 |
C16 |
H16 |
119.5 |
119.9 |
| C18 |
C17 |
H17 |
119.8 |
120.1 |
| C18 |
C19 |
H19 |
118.7 |
120.0 |
| C21 |
C20 |
C23 |
113.3 |
118.1 |
| C20 |
C23 |
H23 |
117.6 |
120.6 |
Torsion Angles for BX2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| C3 |
N1 |
C7 |
C6 |
0.0 |
360.0 |
| C3 |
N1 |
C7 |
C8 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
N1 |
359.9 |
0.0 |
| N1 |
C7 |
C6 |
H6 |
179.9 |
180.0 |
| C6 |
C7 |
N1 |
C8 |
180.1 |
179.9 |
| N1 |
C7 |
C8 |
C9 |
72.4 |
304.9 |
| N1 |
C7 |
C8 |
H8 |
192.5 |
65.0 |
| N1 |
C7 |
C8 |
H8A |
312.5 |
185.0 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H1A |
300.0 |
300.0 |
| C3 |
C2 |
C1 |
H1B |
60.0 |
60.0 |
| C2 |
C3 |
N1 |
C7 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
H2A |
120.0 |
120.0 |
| H2 |
C2 |
C1 |
H1 |
300.0 |
300.0 |
| H2 |
C2 |
C1 |
H1A |
60.0 |
60.0 |
| H2 |
C2 |
C1 |
H1B |
180.0 |
180.0 |
| C3 |
C2 |
H2 |
H2A |
241.4 |
240.0 |
| H2A |
C2 |
C1 |
H1 |
60.0 |
60.0 |
| H2A |
C2 |
C1 |
H1A |
180.0 |
180.0 |
| H2A |
C2 |
C1 |
H1B |
300.0 |
300.0 |
| C3 |
C2 |
H2A |
H2 |
118.6 |
120.0 |
| C11 |
N2 |
C12 |
C13 |
180.5 |
179.7 |
| C12 |
N2 |
C13 |
H13 |
180.0 |
269.7 |
| C12 |
N2 |
C13 |
H13A |
300.0 |
29.6 |
| C12 |
N2 |
C13 |
H13B |
60.0 |
149.7 |
| C13 |
N2 |
C11 |
C10 |
179.6 |
179.9 |
| H13 |
C13 |
N2 |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
N2 |
H13B |
120.0 |
119.9 |
| H13A |
C13 |
N2 |
H13B |
240.0 |
239.9 |
| C12 |
N2 |
C11 |
C13 |
179.5 |
180.3 |
| C11 |
N2 |
C13 |
H13 |
359.4 |
90.0 |
| C11 |
N2 |
C13 |
H13A |
119.4 |
210.0 |
| C11 |
N2 |
C13 |
H13B |
239.4 |
330.1 |
| N3 |
C10 |
C11 |
N2 |
357.1 |
359.9 |
| C4 |
C3 |
N1 |
C7 |
360.0 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
57.1 |
5.0 |
| C4 |
C3 |
C2 |
H2A |
297.1 |
245.0 |
| N3 |
C12 |
N2 |
C13 |
184.9 |
180.1 |
| C12 |
N3 |
C10 |
C5 |
244.6 |
241.4 |
| C12 |
N3 |
C10 |
C11 |
5.7 |
0.0 |
| N3 |
C12 |
N4 |
HN4 |
360.0 |
360.0 |
| N3 |
C12 |
N4 |
HN4A |
180.0 |
180.0 |
| N2 |
C11 |
C10 |
N3 |
357.1 |
359.9 |
| C10 |
N3 |
C12 |
N4 |
166.2 |
180.0 |
| N3 |
C10 |
C5 |
C4 |
319.4 |
344.3 |
| C4 |
C5 |
C6 |
C7 |
0.1 |
360.0 |
| C4 |
C5 |
C6 |
H6 |
180.1 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
| N4 |
C12 |
N2 |
C13 |
11.5 |
0.2 |
| HN4 |
N4 |
C12 |
HN4A |
180.0 |
180.0 |
| C12 |
N4 |
HN4 |
HN4A |
180.0 |
180.0 |
| C12 |
N4 |
HN4A |
HN4 |
180.0 |
180.0 |
| N2 |
C11 |
C10 |
C5 |
116.4 |
118.5 |
| C5 |
C10 |
N3 |
C12 |
244.6 |
241.4 |
| N3 |
C10 |
C5 |
C11 |
113.4 |
114.5 |
| C10 |
C5 |
C4 |
H4 |
0.1 |
0.0 |
| C10 |
C5 |
C6 |
H6 |
359.9 |
0.0 |
| N1 |
C7 |
C6 |
C5 |
359.9 |
0.0 |
| N3 |
C10 |
C5 |
C6 |
139.6 |
164.3 |
| C6 |
C5 |
C4 |
H4 |
179.9 |
180.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
C8 |
180.0 |
180.0 |
| C21 |
N5 |
C22 |
N6 |
359.7 |
359.9 |
| C21 |
N5 |
C22 |
H22 |
179.7 |
180.0 |
| N5 |
C21 |
C20 |
C23 |
359.9 |
360.0 |
| C22 |
N5 |
C21 |
C20 |
0.2 |
0.1 |
| C22 |
N5 |
C21 |
H21 |
180.2 |
180.0 |
| N5 |
C22 |
N6 |
C23 |
0.3 |
0.0 |
| N1 |
C7 |
C6 |
C8 |
179.9 |
180.1 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
252.3 |
125.0 |
| C6 |
C7 |
C8 |
H8 |
12.4 |
245.0 |
| C6 |
C7 |
C8 |
H8A |
132.4 |
5.1 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
C8 |
0.0 |
359.9 |
| N5 |
C22 |
N6 |
H22 |
180.0 |
180.0 |
| C22 |
N6 |
C23 |
C20 |
359.8 |
0.0 |
| C22 |
N6 |
C23 |
H23 |
179.8 |
180.0 |
| C21 |
C20 |
C23 |
N6 |
0.1 |
360.0 |
| C20 |
C23 |
N6 |
H23 |
180.0 |
180.1 |
| N1 |
C7 |
C8 |
C6 |
180.1 |
179.9 |
| C8 |
C7 |
C6 |
H6 |
0.0 |
359.9 |
| C9 |
C8 |
C7 |
H8 |
240.0 |
240.0 |
| C9 |
C8 |
C7 |
H8A |
120.0 |
119.9 |
| C7 |
C8 |
C9 |
H9 |
180.0 |
60.1 |
| C7 |
C8 |
C9 |
H9A |
300.0 |
180.0 |
| C7 |
C8 |
C9 |
H9B |
60.0 |
300.0 |
| H8 |
C8 |
C7 |
H8A |
240.0 |
240.0 |
| C7 |
C8 |
C9 |
H8 |
120.0 |
120.0 |
| C7 |
C8 |
C9 |
H8A |
240.0 |
240.1 |
| H8 |
C8 |
C9 |
H8A |
120.0 |
120.0 |
| H9 |
C9 |
C8 |
H9A |
240.0 |
240.1 |
| H9 |
C9 |
C8 |
H9B |
120.0 |
120.0 |
| H9A |
C9 |
C8 |
H9B |
240.0 |
240.0 |
| C7 |
C8 |
H8 |
C9 |
237.9 |
240.0 |
| C7 |
C8 |
H8 |
H8A |
118.9 |
120.0 |
| C9 |
C8 |
H8 |
H8A |
241.1 |
240.0 |
| H8 |
C8 |
C9 |
H9 |
59.9 |
300.0 |
| H8 |
C8 |
C9 |
H9A |
180.0 |
60.0 |
| H8 |
C8 |
C9 |
H9B |
300.0 |
180.0 |
| C7 |
C8 |
H8A |
C9 |
122.1 |
119.9 |
| C7 |
C8 |
H8A |
H8 |
241.0 |
240.0 |
| C9 |
C8 |
H8A |
H8 |
118.9 |
120.0 |
| H8A |
C8 |
C9 |
H9 |
299.9 |
180.0 |
| H8A |
C8 |
C9 |
H9A |
60.0 |
299.9 |
| H8A |
C8 |
C9 |
H9B |
180.0 |
60.0 |
| H9 |
C9 |
C8 |
H8 |
59.9 |
300.0 |
| H9 |
C9 |
C8 |
H8A |
299.9 |
180.0 |
| C8 |
C9 |
H9 |
H9A |
120.0 |
120.0 |
| C8 |
C9 |
H9 |
H9B |
240.0 |
240.0 |
| H9A |
C9 |
H9 |
H9B |
120.0 |
120.0 |
| H9A |
C9 |
C8 |
H8 |
180.0 |
60.0 |
| H9A |
C9 |
C8 |
H8A |
60.0 |
299.9 |
| C8 |
C9 |
H9A |
H9 |
240.0 |
240.0 |
| C8 |
C9 |
H9A |
H9B |
120.0 |
120.0 |
| H9 |
C9 |
H9A |
H9B |
240.0 |
240.0 |
| H9B |
C9 |
C8 |
H8 |
300.0 |
180.0 |
| H9B |
C9 |
C8 |
H8A |
180.0 |
60.0 |
| C8 |
C9 |
H9B |
H9 |
120.0 |
120.0 |
| C8 |
C9 |
H9B |
H9A |
240.0 |
240.0 |
| H9 |
C9 |
H9B |
H9A |
120.0 |
120.0 |
| C10 |
C11 |
N2 |
C13 |
179.6 |
179.9 |
| C11 |
C10 |
N3 |
C12 |
5.7 |
0.0 |
| N3 |
C10 |
C11 |
C5 |
240.8 |
241.4 |
| N2 |
C13 |
H13 |
H13A |
120.0 |
120.0 |
| N2 |
C13 |
H13 |
H13B |
240.0 |
240.0 |
| H13A |
C13 |
H13 |
H13B |
120.0 |
120.0 |
| N2 |
C13 |
H13A |
H13 |
240.0 |
240.0 |
| N2 |
C13 |
H13A |
H13B |
120.0 |
120.1 |
| H13 |
C13 |
H13A |
H13B |
240.0 |
240.1 |
| N2 |
C13 |
H13B |
H13 |
120.0 |
120.0 |
| N2 |
C13 |
H13B |
H13A |
240.0 |
239.9 |
| H13 |
C13 |
H13B |
H13A |
120.0 |
119.9 |
| C19 |
C14 |
C15 |
H15 |
180.2 |
180.3 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
180.1 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
179.9 |
| C17 |
C16 |
C15 |
H15 |
179.8 |
180.0 |
| H16 |
C16 |
C15 |
H15 |
359.8 |
0.0 |
| C18 |
C17 |
C16 |
H16 |
180.1 |
180.1 |
| H17 |
C17 |
C16 |
H16 |
0.2 |
360.0 |
| N5 |
C21 |
C20 |
C18 |
179.9 |
180.0 |
| N6 |
C23 |
C20 |
C18 |
180.1 |
180.0 |
| C20 |
C18 |
C17 |
H17 |
0.3 |
0.0 |
| C20 |
C18 |
C19 |
H19 |
359.8 |
359.8 |
| C19 |
C18 |
C17 |
H17 |
179.9 |
179.7 |
| C20 |
C21 |
N5 |
C22 |
0.2 |
0.1 |
| N5 |
C21 |
C20 |
H21 |
180.0 |
180.0 |
| N6 |
C23 |
C20 |
C21 |
0.1 |
360.0 |
| C21 |
C20 |
C23 |
H23 |
180.1 |
180.0 |
| N6 |
C23 |
C20 |
H23 |
180.0 |
179.9 |
| H21 |
C21 |
N5 |
C22 |
180.2 |
180.0 |
| N5 |
C21 |
H21 |
C20 |
180.0 |
180.0 |
| H21 |
C21 |
C20 |
C23 |
179.9 |
180.0 |
| N5 |
C22 |
H22 |
N6 |
180.0 |
180.0 |
| H22 |
C22 |
N6 |
C23 |
180.4 |
180.0 |
| N6 |
C23 |
H23 |
C20 |
180.0 |
180.1 |