PDB Chemical Component BVD

Ideal Model

Chemical Description

Name 5-BROMOVINYLDEOXYURIDINE
Formula C11 H13 Br N2 O5
Formal charge 0
Molecular weight 333.135 g/mol
Component type NON-POLYMER

Chemical features

Atom count 32
Chiral atom count 3
Chiral atoms C4' C1' C3'
Bond count 33
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-[(E)-2-bromoethenyl]-2'-deoxyuridine
Systematic name (OpenEye OEToolkits) 5-[(E)-2-bromoethenyl]-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(\C=C\Br)C(=O)NC2=O
SMILES (CACTVS) OC[CH]1O[CH](C[CH]1O)N2C=C(C=CBr)C(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)\C=C\Br)CO)O
InChI descriptor InChI=1S/C11H13BrN2O5/c12-2-1-6-4-14(11(18)13-10(6)17)9-3-7(16)8(5-15)19-9/h1-2,4,7-9,15-16H,3,5H2,(H,13,17,18)/b2-1+/t7-,8+,9+/m0/s1
InChIKey descriptor ODZBBRURCPAEIQ-PIXDULNESA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1KI8
Processing site RCSB