PDB Chemical Component BUG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BUG
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.465 |
1.469 |
N |
H |
1.000 |
1.008 |
N |
H2 |
1.000 |
1.009 |
CA |
CB |
1.573 |
1.530 |
CA |
C |
1.548 |
1.507 |
CA |
HA1 |
1.100 |
1.090 |
CB |
CG1 |
1.508 |
1.531 |
CB |
CG2 |
1.494 |
1.531 |
CB |
CG3 |
1.529 |
1.530 |
CG1 |
HG11 |
1.100 |
1.090 |
CG1 |
HG12 |
1.100 |
1.090 |
CG1 |
HG13 |
1.100 |
1.090 |
CG2 |
HG21 |
1.100 |
1.090 |
CG2 |
HG22 |
1.100 |
1.089 |
CG2 |
HG23 |
1.100 |
1.090 |
CG3 |
HG31 |
1.100 |
1.091 |
CG3 |
HG32 |
1.100 |
1.090 |
CG3 |
HG33 |
1.099 |
1.090 |
C |
O |
1.253 |
1.207 |
C |
OXT |
1.333 |
1.343 |
OXT |
HXT |
0.950 |
0.967 |
Bond Angles for BUG
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
109.5 |
111.1 |
CA |
N |
H2 |
109.5 |
111.0 |
N |
CA |
CB |
111.5 |
109.4 |
N |
CA |
C |
115.4 |
109.4 |
N |
CA |
HA1 |
105.9 |
109.5 |
H |
N |
H2 |
109.4 |
111.0 |
CB |
CA |
C |
113.2 |
109.5 |
CB |
CA |
HA1 |
104.8 |
109.4 |
CA |
CB |
CG1 |
110.2 |
109.5 |
CA |
CB |
CG2 |
109.3 |
109.5 |
CA |
CB |
CG3 |
112.1 |
109.5 |
C |
CA |
HA1 |
105.0 |
109.5 |
CA |
C |
O |
120.2 |
120.0 |
CA |
C |
OXT |
113.3 |
120.0 |
CG1 |
CB |
CG2 |
108.1 |
109.4 |
CG1 |
CB |
CG3 |
110.2 |
109.5 |
CB |
CG1 |
HG11 |
109.5 |
109.4 |
CB |
CG1 |
HG12 |
109.5 |
109.5 |
CB |
CG1 |
HG13 |
109.5 |
109.4 |
CG2 |
CB |
CG3 |
106.8 |
109.4 |
CB |
CG2 |
HG21 |
109.5 |
109.4 |
CB |
CG2 |
HG22 |
109.5 |
109.5 |
CB |
CG2 |
HG23 |
109.4 |
109.5 |
CB |
CG3 |
HG31 |
109.5 |
109.4 |
CB |
CG3 |
HG32 |
109.5 |
109.5 |
CB |
CG3 |
HG33 |
109.5 |
109.5 |
HG11 |
CG1 |
HG12 |
109.5 |
109.5 |
HG11 |
CG1 |
HG13 |
109.4 |
109.5 |
HG12 |
CG1 |
HG13 |
109.5 |
109.5 |
HG21 |
CG2 |
HG22 |
109.4 |
109.5 |
HG21 |
CG2 |
HG23 |
109.5 |
109.5 |
HG22 |
CG2 |
HG23 |
109.4 |
109.5 |
HG31 |
CG3 |
HG32 |
109.4 |
109.5 |
HG31 |
CG3 |
HG33 |
109.4 |
109.5 |
HG32 |
CG3 |
HG33 |
109.5 |
109.5 |
O |
C |
OXT |
121.9 |
120.0 |
C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for BUG
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
240.0 |
236.0 |
CB |
CA |
N |
C |
229.1 |
240.0 |
CB |
CA |
N |
HA1 |
113.4 |
120.0 |
N |
CA |
CB |
CG1 |
180.2 |
60.0 |
N |
CA |
CB |
CG2 |
298.8 |
180.0 |
N |
CA |
CB |
CG3 |
57.1 |
300.0 |
C |
CA |
N |
HA1 |
244.3 |
239.9 |
N |
CA |
C |
O |
353.5 |
340.0 |
N |
CA |
C |
OXT |
150.0 |
160.0 |
CA |
N |
H |
H2 |
120.0 |
123.9 |
H |
N |
CA |
CB |
180.0 |
300.0 |
H |
N |
CA |
C |
311.0 |
60.0 |
H |
N |
CA |
HA1 |
66.6 |
180.1 |
CA |
N |
H2 |
H |
239.9 |
236.0 |
H2 |
N |
CA |
CB |
300.0 |
64.0 |
H2 |
N |
CA |
C |
71.0 |
184.0 |
H2 |
N |
CA |
HA1 |
186.6 |
304.0 |
CB |
CA |
N |
H |
180.0 |
300.0 |
CB |
CA |
N |
H2 |
300.0 |
64.0 |
N |
CA |
CB |
C |
132.1 |
119.9 |
N |
CA |
CB |
HA1 |
245.9 |
240.0 |
C |
CA |
CB |
HA1 |
113.9 |
120.1 |
CB |
CA |
C |
O |
123.6 |
100.0 |
CB |
CA |
C |
OXT |
280.2 |
280.0 |
CG1 |
CB |
CA |
CG2 |
241.3 |
240.0 |
CG1 |
CB |
CA |
CG3 |
123.1 |
120.1 |
CA |
CB |
CG1 |
HG11 |
180.0 |
59.9 |
CA |
CB |
CG1 |
HG12 |
300.0 |
180.0 |
CA |
CB |
CG1 |
HG13 |
60.0 |
300.0 |
CG2 |
CB |
CA |
CG3 |
241.7 |
240.0 |
CA |
CB |
CG2 |
HG21 |
180.0 |
60.0 |
CA |
CB |
CG2 |
HG22 |
300.0 |
180.0 |
CA |
CB |
CG2 |
HG23 |
60.0 |
300.0 |
CA |
CB |
CG3 |
HG31 |
180.0 |
60.0 |
CA |
CB |
CG3 |
HG32 |
300.0 |
180.0 |
CA |
CB |
CG3 |
HG33 |
60.0 |
300.1 |
C |
CA |
N |
H |
311.0 |
60.0 |
C |
CA |
N |
H2 |
71.0 |
184.0 |
N |
CA |
C |
CB |
229.9 |
240.1 |
N |
CA |
C |
HA1 |
116.1 |
120.1 |
CB |
CA |
C |
HA1 |
246.3 |
240.0 |
C |
CA |
CB |
CG1 |
48.1 |
300.1 |
C |
CA |
CB |
CG2 |
166.7 |
60.0 |
C |
CA |
CB |
CG3 |
285.0 |
180.0 |
O |
C |
CA |
OXT |
203.5 |
180.0 |
CA |
C |
OXT |
HXT |
203.9 |
180.0 |
HA1 |
CA |
N |
H |
66.6 |
180.1 |
HA1 |
CA |
N |
H2 |
186.6 |
304.0 |
N |
CA |
HA1 |
CB |
118.0 |
120.0 |
N |
CA |
HA1 |
C |
237.5 |
240.0 |
CB |
CA |
HA1 |
C |
119.5 |
120.0 |
HA1 |
CA |
CB |
CG1 |
294.2 |
180.0 |
HA1 |
CA |
CB |
CG2 |
52.9 |
300.0 |
HA1 |
CA |
CB |
CG3 |
171.1 |
60.0 |
HA1 |
CA |
C |
O |
237.4 |
220.0 |
HA1 |
CA |
C |
OXT |
33.9 |
40.0 |
CG1 |
CB |
CA |
C |
48.1 |
300.1 |
CG1 |
CB |
CA |
HA1 |
294.2 |
180.0 |
CA |
CB |
CG1 |
CG2 |
119.4 |
120.0 |
CA |
CB |
CG1 |
CG3 |
235.8 |
239.9 |
CG2 |
CB |
CG1 |
CG3 |
116.4 |
119.9 |
CG1 |
CB |
CG2 |
HG21 |
300.0 |
180.0 |
CG1 |
CB |
CG2 |
HG22 |
60.0 |
300.0 |
CG1 |
CB |
CG2 |
HG23 |
179.9 |
60.0 |
CG1 |
CB |
CG3 |
HG31 |
56.9 |
299.9 |
CG1 |
CB |
CG3 |
HG32 |
176.9 |
59.9 |
CG1 |
CB |
CG3 |
HG33 |
296.9 |
180.0 |
HG11 |
CG1 |
CB |
HG12 |
240.0 |
240.0 |
HG11 |
CG1 |
CB |
HG13 |
120.0 |
119.9 |
HG12 |
CG1 |
CB |
HG13 |
240.0 |
240.0 |
CG2 |
CB |
CA |
C |
166.7 |
60.0 |
CG2 |
CB |
CA |
HA1 |
52.9 |
300.0 |
CA |
CB |
CG2 |
CG1 |
240.0 |
240.0 |
CA |
CB |
CG2 |
CG3 |
121.5 |
120.0 |
CG1 |
CB |
CG2 |
CG3 |
241.5 |
240.1 |
CG2 |
CB |
CG1 |
HG11 |
60.6 |
299.9 |
CG2 |
CB |
CG1 |
HG12 |
180.6 |
60.0 |
CG2 |
CB |
CG1 |
HG13 |
300.6 |
180.0 |
CG2 |
CB |
CG3 |
HG31 |
299.7 |
180.0 |
CG2 |
CB |
CG3 |
HG32 |
59.7 |
300.0 |
CG2 |
CB |
CG3 |
HG33 |
179.7 |
60.1 |
HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.0 |
HG21 |
CG2 |
CB |
HG23 |
120.1 |
120.0 |
HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.0 |
CG3 |
CB |
CA |
C |
285.0 |
180.0 |
CG3 |
CB |
CA |
HA1 |
171.1 |
60.0 |
CA |
CB |
CG3 |
CG1 |
123.1 |
120.1 |
CA |
CB |
CG3 |
CG2 |
240.3 |
240.0 |
CG1 |
CB |
CG3 |
CG2 |
117.2 |
119.9 |
CG3 |
CB |
CG1 |
HG11 |
304.2 |
180.0 |
CG3 |
CB |
CG1 |
HG12 |
64.2 |
300.1 |
CG3 |
CB |
CG1 |
HG13 |
184.2 |
60.1 |
CG3 |
CB |
CG2 |
HG21 |
58.5 |
299.9 |
CG3 |
CB |
CG2 |
HG22 |
178.5 |
60.0 |
CG3 |
CB |
CG2 |
HG23 |
298.4 |
180.0 |
HG31 |
CG3 |
CB |
HG32 |
240.0 |
240.0 |
HG31 |
CG3 |
CB |
HG33 |
120.0 |
119.9 |
HG32 |
CG3 |
CB |
HG33 |
240.0 |
239.9 |
HG11 |
CG1 |
CB |
CG2 |
60.6 |
299.9 |
HG11 |
CG1 |
CB |
CG3 |
304.2 |
180.0 |
CB |
CG1 |
HG11 |
HG12 |
120.0 |
120.0 |
CB |
CG1 |
HG11 |
HG13 |
240.0 |
240.1 |
HG12 |
CG1 |
HG11 |
HG13 |
120.0 |
120.1 |
HG12 |
CG1 |
CB |
CG2 |
180.6 |
60.0 |
HG12 |
CG1 |
CB |
CG3 |
64.2 |
300.1 |
CB |
CG1 |
HG12 |
HG11 |
239.9 |
240.0 |
CB |
CG1 |
HG12 |
HG13 |
120.0 |
120.0 |
HG11 |
CG1 |
HG12 |
HG13 |
240.1 |
239.9 |
HG13 |
CG1 |
CB |
CG2 |
300.6 |
180.0 |
HG13 |
CG1 |
CB |
CG3 |
184.2 |
60.1 |
CB |
CG1 |
HG13 |
HG11 |
120.0 |
119.9 |
CB |
CG1 |
HG13 |
HG12 |
240.0 |
240.0 |
HG11 |
CG1 |
HG13 |
HG12 |
120.0 |
120.1 |
HG21 |
CG2 |
CB |
CG3 |
58.5 |
299.9 |
CB |
CG2 |
HG21 |
HG22 |
120.0 |
120.1 |
CB |
CG2 |
HG21 |
HG23 |
240.0 |
240.0 |
HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.0 |
HG22 |
CG2 |
CB |
CG3 |
178.5 |
60.0 |
CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.0 |
CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
240.0 |
HG23 |
CG2 |
CB |
CG3 |
298.4 |
180.0 |
CB |
CG2 |
HG23 |
HG21 |
120.1 |
119.9 |
CB |
CG2 |
HG23 |
HG22 |
240.0 |
239.9 |
HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |
CB |
CG3 |
HG31 |
HG32 |
120.0 |
120.0 |
CB |
CG3 |
HG31 |
HG33 |
240.0 |
240.0 |
HG32 |
CG3 |
HG31 |
HG33 |
120.0 |
120.1 |
CB |
CG3 |
HG32 |
HG31 |
240.0 |
240.1 |
CB |
CG3 |
HG32 |
HG33 |
120.0 |
120.0 |
HG31 |
CG3 |
HG32 |
HG33 |
240.0 |
240.0 |
CB |
CG3 |
HG33 |
HG31 |
120.0 |
119.9 |
CB |
CG3 |
HG33 |
HG32 |
240.0 |
239.9 |
HG31 |
CG3 |
HG33 |
HG32 |
120.0 |
120.0 |
O |
C |
CA |
HA1 |
237.4 |
220.0 |
CA |
C |
O |
OXT |
154.5 |
180.0 |
O |
C |
OXT |
HXT |
360.0 |
0.0 |
OXT |
C |
CA |
HA1 |
33.9 |
40.0 |
CA |
C |
OXT |
O |
203.9 |
180.0 |