PDB Chemical Component BUD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BUD
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.535 |
1.530 |
C1 |
H1 |
1.100 |
1.090 |
C1 |
H1A |
1.100 |
1.090 |
C1 |
H1B |
1.100 |
1.090 |
O1 |
C2 |
1.449 |
1.428 |
O1 |
HO1 |
0.950 |
0.967 |
C2 |
C3 |
1.533 |
1.531 |
C2 |
H2 |
1.100 |
1.090 |
C3 |
O2 |
1.460 |
1.428 |
O2 |
HO2 |
0.950 |
0.967 |
C3 |
C4 |
1.532 |
1.530 |
C3 |
H3 |
1.100 |
1.090 |
C4 |
H4 |
1.100 |
1.090 |
C4 |
H4A |
1.100 |
1.090 |
C4 |
H4B |
1.100 |
1.090 |
Bond Angles for BUD
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
H1 |
109.5 |
109.5 |
C2 |
C1 |
H1A |
109.4 |
109.4 |
C2 |
C1 |
H1B |
109.4 |
109.5 |
C1 |
C2 |
O1 |
105.9 |
109.5 |
C1 |
C2 |
C3 |
111.1 |
109.4 |
C1 |
C2 |
H2 |
110.4 |
109.5 |
H1 |
C1 |
H1A |
109.5 |
109.5 |
H1 |
C1 |
H1B |
109.5 |
109.5 |
H1A |
C1 |
H1B |
109.5 |
109.5 |
C2 |
O1 |
HO1 |
109.5 |
114.1 |
O1 |
C2 |
C3 |
108.2 |
109.5 |
O1 |
C2 |
H2 |
113.1 |
109.5 |
C3 |
C2 |
H2 |
108.1 |
109.4 |
C2 |
C3 |
O2 |
107.5 |
109.5 |
C2 |
C3 |
C4 |
107.3 |
109.4 |
C2 |
C3 |
H3 |
111.2 |
109.5 |
C3 |
O2 |
HO2 |
109.5 |
114.1 |
C4 |
C3 |
H3 |
112.0 |
109.5 |
C3 |
C4 |
H4 |
109.5 |
109.5 |
C3 |
C4 |
H4A |
109.4 |
109.4 |
C3 |
C4 |
H4B |
109.5 |
109.5 |
H4 |
C4 |
H4A |
109.5 |
109.4 |
H4 |
C4 |
H4B |
109.4 |
109.5 |
H4A |
C4 |
H4B |
109.5 |
109.5 |
Torsion Angles for BUD
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
C1 |
C2 |
O1 |
HO1 |
180.0 |
60.1 |
O1 |
C2 |
C1 |
C3 |
117.2 |
120.0 |
O1 |
C2 |
C1 |
H2 |
237.2 |
239.9 |
C3 |
C2 |
C1 |
H2 |
120.0 |
120.0 |
C1 |
C2 |
C3 |
O2 |
183.0 |
55.0 |
C1 |
C2 |
C3 |
C4 |
297.5 |
175.0 |
C1 |
C2 |
C3 |
H3 |
60.3 |
295.0 |
C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
C2 |
C1 |
H1 |
H1B |
240.0 |
239.9 |
H1 |
C1 |
C2 |
O1 |
180.0 |
180.0 |
H1 |
C1 |
C2 |
C3 |
62.8 |
60.0 |
H1 |
C1 |
C2 |
H2 |
302.8 |
300.0 |
H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
H1A |
C1 |
C2 |
O1 |
300.0 |
300.0 |
H1A |
C1 |
C2 |
C3 |
182.8 |
180.0 |
H1A |
C1 |
C2 |
H2 |
62.8 |
60.0 |
H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
C2 |
C1 |
H1B |
H1A |
240.1 |
240.0 |
H1B |
C1 |
C2 |
O1 |
60.0 |
60.0 |
H1B |
C1 |
C2 |
C3 |
302.8 |
300.0 |
H1B |
C1 |
C2 |
H2 |
182.8 |
180.0 |
H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
O1 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
O1 |
C2 |
C1 |
H1A |
300.0 |
300.0 |
O1 |
C2 |
C1 |
H1B |
60.0 |
60.0 |
C1 |
C2 |
O1 |
C3 |
240.9 |
240.0 |
C1 |
C2 |
O1 |
H2 |
121.1 |
120.1 |
C3 |
C2 |
O1 |
H2 |
240.2 |
240.0 |
O1 |
C2 |
C3 |
O2 |
67.2 |
295.0 |
O1 |
C2 |
C3 |
C4 |
181.7 |
55.0 |
O1 |
C2 |
C3 |
H3 |
304.5 |
175.0 |
HO1 |
O1 |
C2 |
C3 |
299.1 |
180.0 |
HO1 |
O1 |
C2 |
H2 |
58.9 |
300.0 |
C3 |
C2 |
C1 |
H1 |
62.8 |
60.0 |
C3 |
C2 |
C1 |
H1A |
182.8 |
180.0 |
C3 |
C2 |
C1 |
H1B |
302.8 |
300.0 |
C1 |
C2 |
C3 |
O1 |
115.8 |
120.0 |
C1 |
C2 |
C3 |
H2 |
238.7 |
240.0 |
C3 |
C2 |
O1 |
HO1 |
299.1 |
180.0 |
O1 |
C2 |
C3 |
H2 |
122.9 |
120.0 |
C2 |
C3 |
O2 |
HO2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
H3 |
237.2 |
240.0 |
C2 |
C3 |
C4 |
H4 |
180.0 |
60.0 |
C2 |
C3 |
C4 |
H4A |
300.0 |
180.0 |
C2 |
C3 |
C4 |
H4B |
60.0 |
300.0 |
H2 |
C2 |
C1 |
H1 |
302.8 |
300.0 |
H2 |
C2 |
C1 |
H1A |
62.8 |
60.0 |
H2 |
C2 |
C1 |
H1B |
182.8 |
180.0 |
C1 |
C2 |
H2 |
O1 |
241.6 |
240.0 |
C1 |
C2 |
H2 |
C3 |
121.7 |
120.0 |
H2 |
C2 |
O1 |
HO1 |
58.9 |
300.0 |
O1 |
C2 |
H2 |
C3 |
240.1 |
240.0 |
H2 |
C2 |
C3 |
O2 |
304.3 |
175.0 |
H2 |
C2 |
C3 |
C4 |
58.8 |
295.0 |
H2 |
C2 |
C3 |
H3 |
181.6 |
55.0 |
O2 |
C3 |
C2 |
H2 |
304.3 |
175.0 |
C2 |
C3 |
O2 |
C4 |
114.9 |
120.0 |
C2 |
C3 |
O2 |
H3 |
237.6 |
240.0 |
C4 |
C3 |
C2 |
H2 |
58.8 |
295.0 |
C2 |
C3 |
C4 |
O2 |
244.9 |
240.0 |
C2 |
C3 |
C4 |
H3 |
122.3 |
120.0 |
C4 |
C3 |
O2 |
HO2 |
65.1 |
60.1 |
H4 |
C4 |
C3 |
H4A |
240.0 |
240.0 |
H4 |
C4 |
C3 |
H4B |
119.9 |
120.0 |
H4A |
C4 |
C3 |
H4B |
240.0 |
240.0 |
H3 |
C3 |
C2 |
H2 |
181.6 |
55.0 |
C2 |
C3 |
H3 |
O2 |
120.2 |
120.0 |
C2 |
C3 |
H3 |
C4 |
239.9 |
240.0 |
H3 |
C3 |
O2 |
HO2 |
302.3 |
300.0 |
H3 |
C3 |
C4 |
H4 |
57.7 |
300.1 |
H3 |
C3 |
C4 |
H4A |
177.7 |
60.0 |
H3 |
C3 |
C4 |
H4B |
297.7 |
180.0 |
H4 |
C4 |
C3 |
H3 |
57.7 |
300.1 |
C3 |
C4 |
H4 |
H4A |
120.0 |
119.9 |
C3 |
C4 |
H4 |
H4B |
240.0 |
240.0 |
H4A |
C4 |
H4 |
H4B |
120.0 |
120.0 |
H4A |
C4 |
C3 |
H3 |
177.7 |
60.0 |
C3 |
C4 |
H4A |
H4 |
239.9 |
240.0 |
C3 |
C4 |
H4A |
H4B |
120.0 |
120.0 |
H4 |
C4 |
H4A |
H4B |
240.1 |
240.0 |
H4B |
C4 |
C3 |
H3 |
297.7 |
180.0 |
C3 |
C4 |
H4B |
H4 |
120.0 |
120.0 |
C3 |
C4 |
H4B |
H4A |
240.0 |
240.0 |
H4 |
C4 |
H4B |
H4A |
120.0 |
120.0 |