PDB Chemical Component BTD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BTD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5' C5' 1.428 1.429
O5' HO5' 0.951 0.967
C5' C4' 1.433 1.530
C5' H5'1 1.115 1.089
C5' H5'2 1.115 1.090
C4' O4' 1.447 1.444
C4' C3' 1.440 1.549
C4' H4' 1.114 1.090
O4' C1' 1.396 1.437
C1' N1 1.516 1.464
C1' C2' 1.455 1.541
C1' H1' 1.114 1.089
N1 C6 1.400 1.367
N1 C2 1.379 1.342
C6 C5 1.350 1.364
C6 H6 1.103 1.080
C2 O2 1.231 1.216
C2 N3 1.330 1.345
N3 C4 1.363 1.350
N3 HN3 1.019 0.970
C4 O4 1.213 1.217
C4 C5 1.477 1.469
C5 C55 1.417 1.478
C55 C44 1.352 1.369
C55 S11 1.853 1.784
C44 C33 1.372 1.379
C44 H44 1.103 1.080
C33 C22 1.388 1.357
C33 H33 1.104 1.080
C22 S11 1.698 1.785
C22 BR 1.880 1.890
C2' C3' 1.485 1.550
C2' H2'1 1.115 1.091
C2' H2'2 1.116 1.090
C3' O3' 1.353 1.428
C3' H3' 1.116 1.090
O3' HO3' 0.950 0.967

Bond Angles for BTD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5' O5' HO5' 107.3 106.8
O5' C5' C4' 107.3 109.5
O5' C5' H5'1 113.0 109.5
O5' C5' H5'2 113.0 109.5
C4' C5' H5'1 113.0 109.4
C4' C5' H5'2 113.1 109.5
C5' C4' O4' 104.5 110.6
C5' C4' C3' 118.6 110.6
C5' C4' H4' 106.4 110.6
H5'1 C5' H5'2 97.4 109.5
O4' C4' C3' 108.1 103.6
O4' C4' H4' 117.3 110.6
C4' O4' C1' 109.8 107.0
C3' C4' H4' 102.7 110.6
C4' C3' C2' 98.9 102.0
C4' C3' O3' 100.4 111.2
C4' C3' H3' 121.1 110.8
O4' C1' N1 100.7 109.9
O4' C1' C2' 101.9 107.2
O4' C1' H1' 122.4 110.0
N1 C1' C2' 117.5 110.0
N1 C1' H1' 108.0 109.9
C1' N1 C6 124.8 119.3
C1' N1 C2 113.0 119.3
C2' C1' H1' 106.9 109.9
C1' C2' C3' 107.6 104.3
C1' C2' H2'1 113.0 110.5
C1' C2' H2'2 112.9 110.5
C6 N1 C2 122.1 121.3
N1 C6 C5 122.0 119.5
N1 C6 H6 120.9 120.3
N1 C2 O2 123.1 119.1
N1 C2 N3 116.6 121.9
C5 C6 H6 117.1 120.2
C6 C5 C4 115.2 118.3
C6 C5 C55 123.3 120.8
O2 C2 N3 120.3 119.0
C2 N3 C4 124.7 120.3
C2 N3 HN3 116.4 119.9
C4 N3 HN3 119.0 119.8
N3 C4 O4 112.7 120.6
N3 C4 C5 119.3 118.7
O4 C4 C5 128.0 120.7
C4 C5 C55 121.5 120.9
C5 C55 C44 127.4 129.0
C5 C55 S11 123.6 129.1
C44 C55 S11 108.9 101.9
C55 C44 C33 113.4 118.7
C55 C44 H44 122.7 120.6
C55 S11 C22 90.5 98.2
C33 C44 H44 124.0 120.7
C44 C33 C22 116.4 119.1
C44 C33 H33 121.3 120.4
C22 C33 H33 122.3 120.4
C33 C22 S11 110.8 102.1
C33 C22 BR 141.4 129.0
S11 C22 BR 107.9 129.0
C3' C2' H2'1 112.9 110.3
C3' C2' H2'2 112.9 110.6
C2' C3' O3' 109.8 110.9
C2' C3' H3' 113.2 110.9
H2'1 C2' H2'2 97.5 110.5
O3' C3' H3' 112.0 110.8
C3' O3' HO3' 100.4 106.9

Torsion Angles for BTD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4' C5' O5' H5'1 234.7 240.0
C4' C5' O5' H5'2 125.3 120.0
O5' C5' C4' O4' 297.2 63.5
O5' C5' C4' C3' 57.5 177.8
O5' C5' C4' H4' 172.5 300.7
H5'1 C5' O5' H5'2 250.6 240.0
HO5' O5' C5' C4' 180.0 180.0
HO5' O5' C5' H5'1 305.3 300.0
HO5' O5' C5' H5'2 54.7 60.0
C4' C5' O5' HO5' 180.0 180.0
O5' C5' C4' H5'1 125.2 120.0
O5' C5' C4' H5'2 234.7 240.0
H5'1 C5' C4' H5'2 109.5 120.0
O4' C4' C5' C3' 239.6 245.7
O4' C4' C5' H4' 124.7 122.8
C5' C4' O4' C1' 120.4 158.6
C3' C4' C5' H4' 245.1 237.1
C5' C4' C3' C2' 267.4 204.6
C5' C4' C3' O3' 155.3 86.3
C5' C4' C3' H3' 31.5 322.7
H5'1 C5' O5' HO5' 305.3 300.0
O5' C5' H5'1 C4' 237.9 240.0
O5' C5' H5'1 H5'2 118.9 120.0
C4' C5' H5'1 H5'2 241.0 240.0
H5'1 C5' C4' O4' 171.9 303.5
H5'1 C5' C4' C3' 292.3 57.8
H5'1 C5' C4' H4' 47.2 180.7
H5'2 C5' O5' HO5' 54.7 60.0
O5' C5' H5'2 C4' 122.1 120.0
O5' C5' H5'2 H5'1 241.1 240.0
C4' C5' H5'2 H5'1 119.0 120.0
H5'2 C5' C4' O4' 62.5 183.6
H5'2 C5' C4' C3' 182.8 297.8
H5'2 C5' C4' H4' 297.8 60.7
O4' C4' C5' H5'1 171.9 303.5
O4' C4' C5' H5'2 62.5 183.6
C5' C4' O4' C3' 127.2 118.6
C5' C4' O4' H4' 242.6 237.2
C3' C4' O4' H4' 115.4 118.5
O4' C4' C3' C2' 25.9 323.2
O4' C4' C3' O3' 273.8 204.9
O4' C4' C3' H3' 150.0 81.3
C4' O4' C1' N1 222.2 213.9
C4' O4' C1' C2' 343.6 333.5
C4' O4' C1' H1' 102.7 92.9
C3' C4' C5' H5'1 292.3 57.8
C3' C4' C5' H5'2 182.8 297.8
C5' C4' C3' O4' 241.5 241.4
C5' C4' C3' H4' 116.9 122.9
O4' C4' C3' H4' 235.4 241.5
C3' C4' O4' C1' 353.3 40.0
C1' C2' C3' C4' 322.9 20.6
C4' C3' C2' H2'1 197.6 262.0
C4' C3' C2' H2'2 88.2 139.5
C2' C3' C4' O3' 112.1 118.3
C2' C3' C4' H3' 235.9 241.9
O3' C3' C4' H3' 123.8 123.6
C4' C3' O3' HO3' 180.0 174.2
H4' C4' C5' H5'1 47.2 180.7
H4' C4' C5' H5'2 297.8 60.7
C5' C4' H4' O4' 116.4 122.9
C5' C4' H4' C3' 234.7 237.1
O4' C4' H4' C3' 118.3 114.2
H4' C4' O4' C1' 237.9 281.5
H4' C4' C3' C2' 150.5 81.7
H4' C4' C3' O3' 38.4 323.4
H4' C4' C3' H3' 274.6 199.8
C1' O4' C4' C3' 353.3 40.0
C1' O4' C4' H4' 237.9 281.5
N1 C1' O4' C2' 238.6 240.5
N1 C1' O4' H1' 119.5 121.1
O4' C1' N1 C6 44.9 238.5
O4' C1' N1 C2 227.3 58.2
C2' C1' O4' H1' 240.9 240.6
O4' C1' C2' C3' 33.9 2.2
O4' C1' C2' H2'1 159.2 120.7
O4' C1' C2' H2'2 268.6 243.3
O4' C1' N1 C2' 109.6 117.8
O4' C1' N1 H1' 230.6 238.9
C2' C1' N1 H1' 121.0 121.0
N1 C1' C2' C3' 142.7 121.7
N1 C1' C2' H2'1 268.0 240.2
N1 C1' C2' H2'2 17.4 2.8
C6 N1 C1' C2 177.6 180.2
C1' N1 C6 C5 180.5 179.9
C1' N1 C6 H6 0.5 0.0
C1' N1 C2 O2 357.6 0.3
C1' N1 C2 N3 177.7 179.8
C4' C3' C2' C1' 322.9 20.6
O4' C1' C2' N1 251.1 240.5
O4' C1' C2' H1' 129.5 119.5
N1 C1' C2' H1' 238.4 238.9
C2' C1' N1 C6 295.4 120.6
C2' C1' N1 C2 117.8 300.4
C3' C2' C1' H2'1 234.7 241.5
C3' C2' C1' H2'2 125.3 118.9
C1' C2' C3' O3' 67.4 139.1
C1' C2' C3' H3' 193.4 262.7
H2'1 C2' C1' H2'2 250.6 237.4
O4' C1' H1' N1 115.9 121.1
O4' C1' H1' C2' 243.3 242.2
N1 C1' H1' C2' 127.4 121.1
H1' C1' N1 C6 174.3 359.6
H1' C1' N1 C2 356.7 179.3
H1' C1' C2' C3' 264.3 242.7
H1' C1' C2' H2'1 29.6 1.2
H1' C1' C2' H2'2 139.0 123.9
C6 N1 C1' C2' 295.4 120.6
C6 N1 C1' H1' 174.3 359.6
C1' N1 C6 C2 182.6 179.8
C6 N1 C2 O2 179.9 180.1
C6 N1 C2 N3 0.1 359.5
C5 C6 N1 H6 180.0 179.9
N1 C6 C5 C4 1.9 0.1
N1 C6 C5 C55 180.2 180.0
C2 N1 C1' C2' 117.8 300.4
C2 N1 C1' H1' 356.7 179.3
C1' N1 C2 C6 177.7 180.2
C2 N1 C6 C5 357.9 0.2
C2 N1 C6 H6 178.0 180.2
O2 C2 N1 N3 179.9 180.5
N1 C2 N3 C4 2.1 0.5
N1 C2 N3 HN3 182.0 180.3
C5 C6 N1 C2 357.9 0.2
N1 C6 C5 H6 180.0 180.1
N3 C4 C5 C6 0.1 360.0
O4 C4 C5 C6 180.5 180.0
C4 C5 C6 C55 181.7 180.1
C6 C5 C55 C44 339.3 119.8
C6 C5 C55 S11 156.1 300.1
H6 C6 N1 C2 178.0 180.2
N1 C6 H6 C5 180.0 179.9
H6 C6 C5 C4 181.8 180.0
H6 C6 C5 C55 0.2 359.9
N1 C2 O2 N3 180.1 179.5
O2 C2 N3 C4 182.2 180.0
O2 C2 N3 HN3 2.2 359.8
N1 C2 N3 O2 179.9 180.5
C4 N3 C2 HN3 180.0 180.2
C2 N3 C4 O4 177.5 179.7
C2 N3 C4 C5 357.8 359.7
C6 C5 C4 N3 0.1 360.0
C2 N3 C4 HN3 180.0 179.8
O4 C4 N3 C5 179.7 180.0
N3 C4 C5 C55 181.7 180.0
C2 N3 HN3 C4 180.0 180.2
HN3 N3 C4 O4 357.5 360.0
HN3 N3 C4 C5 177.8 179.9
C6 C5 C4 O4 180.5 180.0
O4 C4 N3 HN3 357.5 360.0
N3 C4 O4 C5 180.4 180.0
O4 C4 C5 C55 2.1 0.0
C4 C5 C6 H6 181.8 180.0
C6 C5 C4 C55 178.4 179.9
C5 C4 N3 HN3 177.8 179.9
N3 C4 C5 O4 179.6 180.0
C4 C5 C55 C44 157.6 299.7
C4 C5 C55 S11 334.3 120.0
C55 C5 C6 H6 0.2 359.9
C6 C5 C55 C4 181.8 180.1
C44 C55 C5 S11 183.2 179.7
C5 C55 C44 C33 179.1 179.8
C5 C55 C44 H44 359.1 0.3
C5 C55 S11 C22 181.0 180.1
C5 C55 C44 S11 177.2 180.2
C44 C55 S11 C22 358.3 0.3
C33 C44 C55 H44 180.0 179.5
C55 C44 C33 C22 358.6 0.4
C55 C44 C33 H33 178.7 180.2
C5 C55 S11 C44 182.7 179.8
S11 C55 C44 C33 2.0 359.6
S11 C55 C44 H44 182.0 180.1
C33 C22 S11 C55 1.0 359.9
C55 S11 C22 BR 181.4 180.0
C33 C44 C55 S11 2.0 359.6
C55 C44 C33 H44 180.0 180.5
C22 C33 C44 H33 180.0 180.2
C44 C33 C22 S11 359.9 359.8
C44 C33 C22 BR 179.4 179.7
H44 C44 C55 S11 182.0 180.1
C55 C44 H44 C33 180.0 179.5
H44 C44 C33 C22 178.6 180.0
H44 C44 C33 H33 358.7 359.8
C55 S11 C22 C33 1.0 359.9
C22 C33 C44 H44 178.6 180.0
C44 C33 C22 H33 180.0 179.8
S11 C22 C33 BR 180.6 180.1
H33 C33 C44 H44 358.7 359.8
C44 C33 H33 C22 180.0 180.2
H33 C33 C22 S11 179.9 180.0
H33 C33 C22 BR 359.4 359.9
S11 C22 C33 H33 179.9 180.0
C33 C22 S11 BR 179.6 179.9
BR C22 C33 H33 359.4 359.9
C33 C22 BR S11 180.5 180.1
C2' C3' C4' H4' 150.5 81.7
C4' C3' C2' O3' 255.5 241.5
C4' C3' C2' H3' 129.5 118.0
C3' C2' C1' H1' 264.3 242.7
C1' C2' C3' H2'1 125.3 118.6
C1' C2' C3' H2'2 234.7 241.2
H2'1 C2' C3' H2'2 109.4 122.5
O3' C3' C2' H3' 234.0 236.5
C2' C3' O3' HO3' 76.5 61.5
H2'1 C2' C1' H1' 29.6 1.2
C1' C2' H2'1 C3' 237.6 245.2
C1' C2' H2'1 H2'2 118.8 122.7
C3' C2' H2'1 H2'2 241.2 237.4
H2'1 C2' C3' O3' 302.1 20.5
H2'1 C2' C3' H3' 68.1 144.0
H2'2 C2' C1' H1' 139.0 123.9
C1' C2' H2'2 C3' 122.3 115.0
C1' C2' H2'2 H2'1 241.1 237.4
C3' C2' H2'2 H2'1 118.8 122.4
H2'2 C2' C3' O3' 192.7 257.9
H2'2 C2' C3' H3' 318.7 21.5
O3' C3' C4' H4' 38.4 323.4
C4' C3' O3' C2' 103.5 112.8
C4' C3' O3' H3' 230.2 236.4
O3' C3' C2' H2'1 302.1 20.5
O3' C3' C2' H2'2 192.7 257.9
C2' C3' O3' H3' 126.7 123.6
H3' C3' C4' H4' 274.6 199.8
C4' C3' H3' C2' 242.9 247.5
C4' C3' H3' O3' 118.1 123.9
H3' C3' C2' H2'1 68.1 144.0
H3' C3' C2' H2'2 318.7 21.5
C2' C3' H3' O3' 235.2 236.4
H3' C3' O3' HO3' 309.9 297.9
HO3' O3' C3' H3' 309.9 297.9